Miyakogusa Predicted Gene

Lj0g3v0001919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0001919.1 Non Characterized Hit- tr|I0YVH7|I0YVH7_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,50,0.00000000000006,BRCA2_REPEAT,BRCA2 repeat; SUBFAMILY NOT
NAMED,NULL; BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRC,CUFF.107.1
         (536 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083250.1 | breast cancer type 2 susceptibility protein | ...   454   e-127
Medtr0191s0030.1 | breast cancer type 2 susceptibility protein |...   367   e-101
Medtr6g033115.1 | breast cancer type 2 susceptibility-like prote...   154   1e-37

>Medtr3g083250.1 | breast cancer type 2 susceptibility protein | HC
           | chr3:37568957-37576662 | 20130731
          Length = 1254

 Score =  454 bits (1167), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 271/481 (56%), Positives = 318/481 (66%), Gaps = 40/481 (8%)

Query: 75  NSLFKTGSGKRVTISSTGLVRAKTLLGL--KEDAVGSTVLSPQH-RIGEAHDGKXXXXXX 131
           NSLFKTGSG++VTISS GLVRAKTLLGL   E+ VG+ + +PQ+     A D +      
Sbjct: 257 NSLFKTGSGRKVTISSKGLVRAKTLLGLGLHEETVGANIQTPQNAEKLHAFDEELPHVQ- 315

Query: 132 XXXXXXHGVKESCKIMSAVPFQSPLVSGRGSSTLENGFE-----PDTCGAAVKPAPIKFQ 186
                   + +SCK+MS+  FQSPLV GR    L+NGFE     PD+ G A K APIKFQ
Sbjct: 316 --------LMDSCKMMSSASFQSPLV-GR----LKNGFESKFVQPDSGGGA-KQAPIKFQ 361

Query: 187 TAGGRSLSISNDALRRARXXXXXXXXXXXXXXXXXXXXXXXXPDTRQ-TNAASPCERSAF 245
           TA GRSLSIS DAL+RAR                          T   T++A   E    
Sbjct: 362 TASGRSLSISGDALKRARRLLGDPDLGDFFDGGDSLFSFLDQGQTSTITSSAERSESKNT 421

Query: 246 STPLIHHVTSGN--NDKMKSFTYPLQSSRQQTEFSTKFLCEGNGDNLIMKFDAVGNENVS 303
            TPL+H +T  N  N   KSFTYPLQ S+Q  EFS K   EGNG+NLI+KFD V NE+  
Sbjct: 422 HTPLVHQMTPENHPNHMSKSFTYPLQPSKQM-EFSNKLRNEGNGNNLIVKFDDVVNESDC 480

Query: 304 SRKSSNVCGQKPLHDRNERADQAAYHSSLTGFSSKIDSCGVPVGGRPLVDISNTINTAHP 363
             KSS   GQKPL+++NE AD     SSL GFSS++DS   P+G R LVDISNTI T H 
Sbjct: 481 GCKSSITPGQKPLYNKNEVADTTIKSSSLNGFSSRMDSREKPLG-RALVDISNTIKTVHT 539

Query: 364 NNRLPASGKRRLGLRVIASPFKKPRNSQVFAD--QEVENFPN-----ASGASECKKKVST 416
           N++ PASGKRR+GL    S FKKPR S + A   Q+V+ F N     +SGAS  K+KVST
Sbjct: 540 NHKQPASGKRRIGLHATVSSFKKPRISNISASGGQDVQYFSNDLAQLSSGASGFKRKVST 599

Query: 417 RYPFQYPRMHIKDYFAVPPLQQEV-----HFPNPVGQVTSGNAEKYMFCDGSGNNGMGAE 471
           RYPF +PRM+IKDYFAVPPL+Q+V     +FPNP  QVTS NA  Y+F DGS +N MGAE
Sbjct: 600 RYPFHHPRMYIKDYFAVPPLEQKVVSVISNFPNPARQVTSCNAGAYIFHDGSDSNDMGAE 659

Query: 472 AFVNLLAQHGTSLHFASKEWVLNHYKWIVWKLACYERCNPAKHAGKFLTVSNVLEELKYR 531
           AF++LL QHG SL FASKEWVLNHYKWIVWKLACYERC PA+ AGKFLTVSNVLEELKYR
Sbjct: 660 AFIHLLTQHGASLRFASKEWVLNHYKWIVWKLACYERCYPARCAGKFLTVSNVLEELKYR 719

Query: 532 Y 532
           Y
Sbjct: 720 Y 720



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 102/202 (50%), Gaps = 34/202 (16%)

Query: 1   MSTWKIFSDAGTNFRWQISKDAASNVXXXXXXXXXXXXX---XXXXXXXXXXTLQLFTHQ 57
           MS+W+I  DA  N+RWQI+ D  SNV                             LF  Q
Sbjct: 1   MSSWQILPDADNNYRWQINSDDTSNVIPPSPPPFSIPTPPLPSMYDLLIHASASHLFQPQ 60

Query: 58  GEQELGIGDNSSSCGFGNSLFKTGSGKRVTISSTGLVRAKTL--LGLKEDAVGSTVLSPQ 115
            E+E  I D   S GF NSLFKTGSG++VTISS GLVRAKTL  LGL E+ VG+ + +PQ
Sbjct: 61  -EEENAIDD---SFGFANSLFKTGSGRKVTISSKGLVRAKTLLGLGLHEETVGANIQTPQ 116

Query: 116 H--RIGEAHDGKXXXXXXXXXXXXHGVKESCKIMSAVPFQSPLVSGRGSSTLENGFE--- 170
           +  +    H  +              V +SCK  SA  FQSPLV     S L+NGFE   
Sbjct: 117 NAKKFNSFHQDEPRLQ----------VIDSCKKTSAASFQSPLV-----SRLKNGFENKI 161

Query: 171 --PDT---CGAAVKPAPIKFQT 187
             PDT    G   K APIKFQT
Sbjct: 162 VQPDTGSRSGVGAKQAPIKFQT 183


>Medtr0191s0030.1 | breast cancer type 2 susceptibility protein | HC
           | scaffold0191:30338-23519 | 20130731
          Length = 808

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 237/482 (49%), Positives = 280/482 (58%), Gaps = 72/482 (14%)

Query: 70  SCGFGNSLFKTGSGKRVTISSTGLVRAKTLLGL--KEDAVGSTVLSPQHRIGEAHDGKXX 127
           S GF NSLFKT SG++VT+SS GLVRAKTLLGL  +E+ + S   +P++           
Sbjct: 2   SFGFSNSLFKTASGRKVTLSSNGLVRAKTLLGLGLQEEIIDSNNHTPKN----------- 50

Query: 128 XXXXXXXXXXHGVKESCKIM---SAVPFQSPLV---SGRGSSTLENGFE-PDTCGAAVKP 180
                     HG  E    +   S   F++ +V   SG GS      F+ P    +  K 
Sbjct: 51  ------AKNFHGFDEESPPLVSKSKNGFENKIVQIESGSGSKKAPIKFQTPQNSDSGAKQ 104

Query: 181 APIKFQTAGGRSLSISNDALRRARXXXXXXXXXXXXXXXXXXXXXXXXPDTRQTNAASPC 240
           A  KFQTA GRSLSIS+DAL+RAR                         D RQ       
Sbjct: 105 AQFKFQTAAGRSLSISSDALKRARSLLGDPDLGDFFEGEDSLFLSL---DMRQI------ 155

Query: 241 ERSAFSTPLIHHVT--SGNNDKMKSFTYPLQSSRQQTEFSTKFLC-EGNGDNLIMKFDAV 297
             S  ++ + H  T  S  N   KSFTYPLQ S+Q TEFS K L  EGNG+NLIMKFD V
Sbjct: 156 --SKITSSVGHQKTPESNKNHVTKSFTYPLQPSKQ-TEFSNKLLGHEGNGNNLIMKFDDV 212

Query: 298 GNENVSSRKSSNVCGQKPLHDRNERADQAAYHSSLTGFSSKIDSCGVPVGGRPLVDISNT 357
            NE+    KSSN           E  D     SSL               G    D+S+T
Sbjct: 213 ANESDYGCKSSNTL---------EVVDLTRKSSSL---------------GTTFFDVSST 248

Query: 358 INTAHPNNRLPASGKRRLGLRVIASPFKKPRNSQVFA--DQEVENFPN-----ASGASEC 410
             T    N+ PA GKRRLGL    S FKKPR S+  A  DQ V+NF N     +SGAS C
Sbjct: 249 TKTTPTFNKQPAIGKRRLGLTANVSSFKKPRISKTSASGDQHVQNFHNGLSKLSSGASGC 308

Query: 411 KKKVSTRYPFQYPRMHIKDYFAVPPLQQEVHFPNPVGQVTSGNAEKYMFCDGSGNNGMGA 470
           K+KVSTRYP +  R+HIK++FAVPPL ++VHFPNPV QVTSGNA +Y+F DGS +NG+G 
Sbjct: 309 KRKVSTRYPSRNARIHIKEFFAVPPLMKKVHFPNPVRQVTSGNAGEYIFHDGSDDNGIGG 368

Query: 471 EAFVNLLAQHGTSLHFASKEWVLNHYKWIVWKLACYERCNPAKHAGKFLTVSNVLEELKY 530
           EAF++LLAQHG SLHFASKEWVLNHYKWIVWKLACYER  PA+ AGKFLTVSNVLEELKY
Sbjct: 369 EAFIHLLAQHGASLHFASKEWVLNHYKWIVWKLACYERYYPARCAGKFLTVSNVLEELKY 428

Query: 531 RY 532
           RY
Sbjct: 429 RY 430


>Medtr6g033115.1 | breast cancer type 2 susceptibility-like protein
           | HC | chr6:10433073-10439288 | 20130731
          Length = 614

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 97/129 (75%), Gaps = 20/129 (15%)

Query: 404 ASGASECKKKVSTRYPFQYPRMHIKDYFAVPPLQQEVHFPNPVGQVTSGNAEKYMFCDGS 463
           +SGAS CK+KVSTRYP ++ R+HIK++FAVPPL+++VHFPNPV QVTSGNA +Y+F DGS
Sbjct: 11  SSGASGCKRKVSTRYPSRHARIHIKEFFAVPPLKKKVHFPNPVRQVTSGNAGEYIFHDGS 70

Query: 464 GNNGMGAEAFVNLLAQHGTSLHFASKEWVLNHYKWIVWKLACYERCNPAKHAGKFLTVSN 523
            +NG+G EAF++LLAQHG SLH             + + LA   RC     AGKFLTVSN
Sbjct: 71  DDNGIGGEAFIHLLAQHGASLHL------------VAFILA---RC-----AGKFLTVSN 110

Query: 524 VLEELKYRY 532
           VLEELKYRY
Sbjct: 111 VLEELKYRY 119