Miyakogusa Predicted Gene

Lj0g3v0001899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0001899.1 Non Characterized Hit- tr|D0A173|D0A173_TRYB9
Thymidine kinase, putative OS=Trypanosoma brucei
gambi,35.48,1e-17,P-loop containing nucleoside triphosphate
hydrolases,NULL; seg,NULL; TK,Thymidine kinase; THYMIDINE ,CUFF.123.1
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083230.1 | thymidine kinase-like protein | HC | chr3:3756...   305   1e-83
Medtr3g083240.1 | thymidine kinase-like protein | LC | chr3:3756...    66   2e-11
Medtr3g082350.1 | thymidine kinase-like protein | LC | chr3:3716...    57   7e-09

>Medtr3g083230.1 | thymidine kinase-like protein | HC |
           chr3:37562472-37564655 | 20130731
          Length = 226

 Score =  305 bits (782), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 144/155 (92%), Positives = 150/155 (96%)

Query: 13  GEIHLFVGPMFAGKTTSLLRRIKSEVDTGRNVVMLKSSKDTRYAIDSVVSHDGVKFPCWA 72
           GEIHLFVGPMFAGKTTSLLRRIKSEVD GRNV MLKSSKD RYA+DSVV+HDG+KFPCWA
Sbjct: 17  GEIHLFVGPMFAGKTTSLLRRIKSEVDNGRNVAMLKSSKDNRYAVDSVVTHDGIKFPCWA 76

Query: 73  LPDLMSFKEKYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAADVDGKIVVVAGLDGDYLRR 132
           LPDLM FK+KYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAAD DGKIVVVAGLDGDY+RR
Sbjct: 77  LPDLMLFKDKYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAADEDGKIVVVAGLDGDYMRR 136

Query: 133 SFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRK 167
           SFGSVLHIIP+ADTVTKLTARCELCGKRAFFTLRK
Sbjct: 137 SFGSVLHIIPIADTVTKLTARCELCGKRAFFTLRK 171


>Medtr3g083240.1 | thymidine kinase-like protein | LC |
           chr3:37565351-37566309 | 20130731
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 32/38 (84%)

Query: 130 LRRSFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRK 167
           L RSFGSVLHI P+A  VTKL ARCELCGK AFFTLRK
Sbjct: 83  LLRSFGSVLHITPIAHIVTKLAARCELCGKHAFFTLRK 120


>Medtr3g082350.1 | thymidine kinase-like protein | LC |
           chr3:37162914-37161261 | 20130731
          Length = 109

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 35/57 (61%), Gaps = 12/57 (21%)

Query: 104 DLYDFCCKAADVDGKIVVVAGLDGDYLRRSFGSVLHIIPLADTVTKLTARCELCGKR 160
           DLY   C    V+G++            RSFGSVLHIIP+A+T TKLTARCELC  R
Sbjct: 53  DLYMPVCSHHYVNGQV------------RSFGSVLHIIPIAETATKLTARCELCSVR 97



 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 28/37 (75%), Gaps = 4/37 (10%)

Query: 131 RRSFGSVLHIIPLADTVTKLTARCELCGKRAFFTLRK 167
           RR+FG V HII  AD++TKLTARCELC     FTLRK
Sbjct: 8   RRTFGFVPHIIATADSITKLTARCELC----IFTLRK 40