Miyakogusa Predicted Gene
- Lj0g3v0001829.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0001829.1 tr|G7LCE0|G7LCE0_MEDTR Heterogeneous nuclear
ribonucleoprotein A1 OS=Medicago truncatula
GN=MTR_8g10,43.68,0.00000000000002,RNA-binding domain, RBD,NULL;
RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding,,CUFF.99.1
(453 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 499 e-141
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 496 e-140
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 414 e-115
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 410 e-114
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 362 e-100
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 362 e-100
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 362 e-100
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 258 9e-69
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 212 7e-55
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 212 7e-55
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 184 2e-46
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 154 1e-37
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 143 3e-34
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 129 4e-30
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 129 5e-30
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 129 5e-30
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 129 5e-30
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 88 2e-17
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 87 5e-17
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 1e-15
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 79 1e-14
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 75 1e-13
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 5e-13
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 5e-13
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 5e-13
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 5e-13
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 1e-12
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 71 2e-12
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 71 2e-12
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 71 2e-12
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 5e-12
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 6e-12
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 6e-12
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 7e-12
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 7e-12
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-11
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-11
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-11
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 68 2e-11
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 67 2e-11
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 66 6e-11
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 6e-11
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 6e-11
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 6e-11
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 7e-11
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 7e-11
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 66 7e-11
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 7e-11
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 65 1e-10
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 65 2e-10
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 65 2e-10
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-10
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-10
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 64 2e-10
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 6e-10
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-09
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 5e-09
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 60 6e-09
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 59 9e-09
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 59 1e-08
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 59 1e-08
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 58 2e-08
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 58 2e-08
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 58 2e-08
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 57 4e-08
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 57 4e-08
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 57 5e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 9e-08
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 56 9e-08
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 56 9e-08
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 55 1e-07
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 55 1e-07
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 55 1e-07
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 2e-07
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 55 2e-07
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 55 2e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-07
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-07
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-07
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-07
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-07
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-07
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-07
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-07
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 6e-07
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 6e-07
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 8e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 52 1e-06
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 52 1e-06
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 52 2e-06
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 52 2e-06
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 52 2e-06
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 51 2e-06
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 51 3e-06
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 9e-06
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 499 bits (1285), Expect = e-141, Method: Compositional matrix adjust.
Identities = 287/481 (59%), Positives = 330/481 (68%), Gaps = 30/481 (6%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
M++D+ K+FIGGISWDTN+ RLR+YFS YG+V E+VI+KDRTT RARGFGFV F DPAVA
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPK-------------NGSPGPYRSTKIFVGGLASTVTES 107
+ V+++KH IDG+MV+ KKA P+ +GSPGP R+ KIFVGGLASTVTES
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTES 120
Query: 108 DFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
DFKKYFDQFGTI D+VVM D NTQRPRGFGFITYDSEEAVD V L++FHELNGKMVEVKR
Sbjct: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKR 180
Query: 168 AVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRI 227
AVPKELSPGP SPLS YNY LS VNSF+NGF Q Y PS VGGYGL VDG SP+A GR
Sbjct: 181 AVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRN 240
Query: 228 GFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYDXXX 287
+ FGSGYGM NFEP L+ F GN +F +LS RGLNP + S RF S +GY+
Sbjct: 241 AYAPFGSGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGN 300
Query: 288 XXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTISNTGVGVSLSLSNGN 347
T+N ANS AYIG G G V GN NTGV S S +G+
Sbjct: 301 GGSNSFFSSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGH 360
Query: 348 LGFRGENNNSG--------------LGIGGYRRSSDADIPLTSSYSAPN-GGFDGPFSEF 392
G G N + G LG GY RSS + + TSSYS N GG DG F++F
Sbjct: 361 GG--GNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADF 418
Query: 393 YSSSSVNDDPIYRSSNFEPDGFDPFGYGLGVVASDVSAKCSPGYVGSYTVNKRQPNKGIA 452
Y+++SV D +RSSN E DG PFGYGLG SDVSAK SPGYVG YTVNKRQPN+GI
Sbjct: 419 YNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRGIT 478
Query: 453 T 453
T
Sbjct: 479 T 479
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 285/478 (59%), Positives = 328/478 (68%), Gaps = 30/478 (6%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
M++D+ K+FIGGISWDTN+ RLR+YFS YG+V E+VI+KDRTT RARGFGFV F DPAVA
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPK-------------NGSPGPYRSTKIFVGGLASTVTES 107
+ V+++KH IDG+MV+ KKA P+ +GSPGP R+ KIFVGGLASTVTES
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTES 120
Query: 108 DFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
DFKKYFDQFGTI D+VVM D NTQRPRGFGFITYDSEEAVD V L++FHELNGKMVEVKR
Sbjct: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKR 180
Query: 168 AVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRI 227
AVPKELSPGP SPLS YNY LS VNSF+NGF Q Y PS VGGYGL VDG SP+A GR
Sbjct: 181 AVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRN 240
Query: 228 GFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYDXXX 287
+ FGSGYGM NFEP L+ F GN +F +LS RGLNP + S RF S +GY+
Sbjct: 241 AYAPFGSGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGN 300
Query: 288 XXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTISNTGVGVSLSLSNGN 347
T+N ANS AYIG G G V GN NTGV S S +G+
Sbjct: 301 GGSNSFFSSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGH 360
Query: 348 LGFRGENNNSG--------------LGIGGYRRSSDADIPLTSSYSAPN-GGFDGPFSEF 392
G G N + G LG GY RSS + + TSSYS N GG DG F++F
Sbjct: 361 GG--GNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADF 418
Query: 393 YSSSSVNDDPIYRSSNFEPDGFDPFGYGLGVVASDVSAKCSPGYVGSYTVNKRQPNKG 450
Y+++SV D +RSSN E DG PFGYGLG SDVSAK SPGYVG YTVNKRQPN+G
Sbjct: 419 YNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRG 476
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/482 (49%), Positives = 308/482 (63%), Gaps = 30/482 (6%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME+D K+FIGGISWDT++ RL++YF+ YG+V+E+VI++DR T RARGFGFV FSDPAVA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN-------------GSPGPYRSTKIFVGGLASTVTES 107
E V+ KH IDG+ V+ KKA P++ GSPGP R+ KIFVGGL ST+TES
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 108 DFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
DFK YFDQFGTI D+VVM D NTQRPRGFGFITYDSEEAVD V ++FHELNGKMVEVKR
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKR 180
Query: 168 AVPKELSPGPNHSPLSVY-NYDL-SGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARG 225
AVPKELSPGP SPL Y NY L S +S++N + QGY S +GG+G+ +DG SP+ G
Sbjct: 181 AVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFSPLTGG 240
Query: 226 RIGFPLFG-SGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYD 284
R GF FG +GYGM N E L+ F GN NF ++L R +P Y +S R+A+ IGY+
Sbjct: 241 RTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYN 300
Query: 285 XXXXXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTISNTGVG------ 338
++N + A++G GGG G +I N+G
Sbjct: 301 GGNGRGDSLMNSTSRNVWGNGGLSNANNPVSPGAFLGSGGGAF-GVSIGNSGTNWGAAIQ 359
Query: 339 -----VSLSLSNGNLGFRGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPFSEFY 393
+ + GN + G +++ GLG GY R+S+A +S+++A GG+DG + + Y
Sbjct: 360 GQGGGAASGYATGNNVYEGGDSSFGLGGVGYGRNSNAVANPSSTFNASAGGYDGSYGDLY 419
Query: 394 --SSSSVNDDPIYRSSNFEPDGFDPFGYGLGVVASDVSAKCSPGYVGSYTVNKRQPNKGI 451
S SV +D +RS+ E DG F YGLG +ASD K S GY+GSY V RQPN+GI
Sbjct: 420 RSGSGSVYNDSAWRSATSEIDGSGSFSYGLGGIASDDPVKTSEGYIGSYNVASRQPNRGI 479
Query: 452 AT 453
A
Sbjct: 480 AA 481
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust.
Identities = 238/479 (49%), Positives = 306/479 (63%), Gaps = 30/479 (6%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
ME+D K+FIGGISWDT++ RL++YF+ YG+V+E+VI++DR T RARGFGFV FSDPAVA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPKN-------------GSPGPYRSTKIFVGGLASTVTES 107
E V+ KH IDG+ V+ KKA P++ GSPGP R+ KIFVGGL ST+TES
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 108 DFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
DFK YFDQFGTI D+VVM D NTQRPRGFGFITYDSEEAVD V ++FHELNGKMVEVKR
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKR 180
Query: 168 AVPKELSPGPNHSPLSVY-NYDL-SGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARG 225
AVPKELSPGP SPL Y NY L S +S++N + QGY S +GG+G+ +DG SP+ G
Sbjct: 181 AVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFSPLTGG 240
Query: 226 RIGFPLFG-SGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYD 284
R GF FG +GYGM N E L+ F GN NF ++L R +P Y +S R+A+ IGY+
Sbjct: 241 RTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYN 300
Query: 285 XXXXXXXXXXXXXTQNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTISNTGVG------ 338
++N + A++G GGG G +I N+G
Sbjct: 301 GGNGRGDSLMNSTSRNVWGNGGLSNANNPVSPGAFLGSGGGAF-GVSIGNSGTNWGAAIQ 359
Query: 339 -----VSLSLSNGNLGFRGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPFSEFY 393
+ + GN + G +++ GLG GY R+S+A +S+++A GG+DG + + Y
Sbjct: 360 GQGGGAASGYATGNNVYEGGDSSFGLGGVGYGRNSNAVANPSSTFNASAGGYDGSYGDLY 419
Query: 394 --SSSSVNDDPIYRSSNFEPDGFDPFGYGLGVVASDVSAKCSPGYVGSYTVNKRQPNKG 450
S SV +D +RS+ E DG F YGLG +ASD K S GY+GSY V RQPN+G
Sbjct: 420 RSGSGSVYNDSAWRSATSEIDGSGSFSYGLGGIASDDPVKTSEGYIGSYNVASRQPNRG 478
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/482 (45%), Positives = 282/482 (58%), Gaps = 34/482 (7%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
D K+FIGGISWDTN+ RLRQYF +G V+E+VI+KDRTT RARGFGFV F+DP+VAE V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 LKKKHKIDGKMVDVKKAAPK-------------NGSPGP--YRSTKIFVGGLASTVTESD 108
+ +KH IDG+ V+ KKA P+ +GSP P R+ KIFVGGLASTVTESD
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 109 FKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRA 168
FK YFDQFGTI D+VVM D NTQRPRGFGFITYDSEEAV+ V ++FHELNGKMVEVKRA
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
Query: 169 VPKELSPGPNHSPLSVYNY-DLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRI 227
VPK+LSP P+ L ++Y +S V SF NGF QGY PS +GG+GL +DG +SP GR
Sbjct: 182 VPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRS 241
Query: 228 GFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYDXXX 287
G+ LF YG NFEP LN NENF S+ + R L+ Y S R+ +++ Y
Sbjct: 242 GYSLFSPSYGTGLNFEPPLNQN--ENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGS 299
Query: 288 XXXXXXXXXXT-QNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTISNTGVGVSLSLSNG 346
T Q+ A+S A++G G + N G S S+
Sbjct: 300 NVGNSSAISSTNQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGAA 359
Query: 347 N-------------LGFRGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPFSEFY 393
N L +R + G GY ++S++++ SSY+ NG + + +
Sbjct: 360 NQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKSTF 419
Query: 394 SSSSVNDDPIYRSSNFEPDGFDPFGYGLGVVASDVSAK-CSPGYVGSY-TVNKRQPNKGI 451
+ D +R + E + P +GL SD+ K S G++G+Y V RQ N+GI
Sbjct: 420 EAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNRGI 479
Query: 452 AT 453
A
Sbjct: 480 AA 481
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/482 (45%), Positives = 282/482 (58%), Gaps = 34/482 (7%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
D K+FIGGISWDTN+ RLRQYF +G V+E+VI+KDRTT RARGFGFV F+DP+VAE V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 LKKKHKIDGKMVDVKKAAPK-------------NGSPGP--YRSTKIFVGGLASTVTESD 108
+ +KH IDG+ V+ KKA P+ +GSP P R+ KIFVGGLASTVTESD
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 109 FKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRA 168
FK YFDQFGTI D+VVM D NTQRPRGFGFITYDSEEAV+ V ++FHELNGKMVEVKRA
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
Query: 169 VPKELSPGPNHSPLSVYNY-DLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRI 227
VPK+LSP P+ L ++Y +S V SF NGF QGY PS +GG+GL +DG +SP GR
Sbjct: 182 VPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRS 241
Query: 228 GFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYDXXX 287
G+ LF YG NFEP LN NENF S+ + R L+ Y S R+ +++ Y
Sbjct: 242 GYSLFSPSYGTGLNFEPPLNQN--ENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGS 299
Query: 288 XXXXXXXXXXT-QNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTISNTGVGVSLSLSNG 346
T Q+ A+S A++G G + N G S S+
Sbjct: 300 NVGNSSAISSTNQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGAA 359
Query: 347 N-------------LGFRGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPFSEFY 393
N L +R + G GY ++S++++ SSY+ NG + + +
Sbjct: 360 NQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKSTF 419
Query: 394 SSSSVNDDPIYRSSNFEPDGFDPFGYGLGVVASDVSAK-CSPGYVGSY-TVNKRQPNKGI 451
+ D +R + E + P +GL SD+ K S G++G+Y V RQ N+GI
Sbjct: 420 EAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNRGI 479
Query: 452 AT 453
A
Sbjct: 480 AA 481
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/482 (45%), Positives = 282/482 (58%), Gaps = 34/482 (7%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
D K+FIGGISWDTN+ RLRQYF +G V+E+VI+KDRTT RARGFGFV F+DP+VAE V
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 64 LKKKHKIDGKMVDVKKAAPK-------------NGSPGP--YRSTKIFVGGLASTVTESD 108
+ +KH IDG+ V+ KKA P+ +GSP P R+ KIFVGGLASTVTESD
Sbjct: 62 VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESD 121
Query: 109 FKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRA 168
FK YFDQFGTI D+VVM D NTQRPRGFGFITYDSEEAV+ V ++FHELNGKMVEVKRA
Sbjct: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
Query: 169 VPKELSPGPNHSPLSVYNY-DLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRI 227
VPK+LSP P+ L ++Y +S V SF NGF QGY PS +GG+GL +DG +SP GR
Sbjct: 182 VPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRS 241
Query: 228 GFPLFGSGYGMSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYDXXX 287
G+ LF YG NFEP LN NENF S+ + R L+ Y S R+ +++ Y
Sbjct: 242 GYSLFSPSYGTGLNFEPPLNQN--ENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGS 299
Query: 288 XXXXXXXXXXT-QNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTISNTGVGVSLSLSNG 346
T Q+ A+S A++G G + N G S S+
Sbjct: 300 NVGNSSAISSTNQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGAA 359
Query: 347 N-------------LGFRGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPFSEFY 393
N L +R + G GY ++S++++ SSY+ NG + + +
Sbjct: 360 NQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKSTF 419
Query: 394 SSSSVNDDPIYRSSNFEPDGFDPFGYGLGVVASDVSAK-CSPGYVGSY-TVNKRQPNKGI 451
+ D +R + E + P +GL SD+ K S G++G+Y V RQ N+GI
Sbjct: 420 EAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNRGI 479
Query: 452 AT 453
A
Sbjct: 480 AA 481
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 258 bits (659), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 170/411 (41%), Positives = 223/411 (54%), Gaps = 34/411 (8%)
Query: 74 MVDVKKAAPK-------------NGSPGP--YRSTKIFVGGLASTVTESDFKKYFDQFGT 118
V+ KKA P+ +GSP P R+ KIFVGGLASTVTESDFK YFDQFGT
Sbjct: 2 QVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGT 61
Query: 119 IKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPGPN 178
I D+VVM D NTQRPRGFGFITYDSEEAV+ V ++FHELNGKMVEVKRAVPK+LSP P+
Sbjct: 62 ITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPS 121
Query: 179 HSPLSVYNY-DLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRIGFPLFGSGYG 237
L ++Y +S V SF NGF QGY PS +GG+GL +DG +SP GR G+ LF YG
Sbjct: 122 RGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRSGYSLFSPSYG 181
Query: 238 MSPNFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYDXXXXXXXXXXXXX 297
NFEP LN NENF S+ + R L+ Y S R+ +++ Y
Sbjct: 182 TGLNFEPPLNQN--ENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSNVGNSSAISS 239
Query: 298 T-QNXXXXXXXXXXXXXANSTAYIGLGGGTVRGNTISNTGVGVSLSLSNGN--------- 347
T Q+ A+S A++G G + N G S S+ N
Sbjct: 240 TNQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGAANQAGTIGSGY 299
Query: 348 ----LGFRGENNNSGLGIGGYRRSSDADIPLTSSYSAPNGGFDGPFSEFYSSSSVNDDPI 403
L +R + G GY ++S++++ SSY+ NG + + + + D
Sbjct: 300 GKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKSTFEAGPFYQDHT 359
Query: 404 YRSSNFEPDGFDPFGYGLGVVASDVSAK-CSPGYVGSY-TVNKRQPNKGIA 452
+R + E + P +GL SD+ K S G++G+Y V RQ N+GIA
Sbjct: 360 WRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNRGIA 410
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+GG++ + + YF +G + + V++ D T+R RGFGF+ + E+VL K
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 67 K-HKIDGKMVDVKKAAPKNGSPGPYR 91
H+++GKMV+VK+A PK+ SP P R
Sbjct: 97 TFHELNGKMVEVKRAVPKDLSPSPSR 122
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 98/197 (49%), Positives = 138/197 (70%), Gaps = 19/197 (9%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
M++D K+FIGGISWDTN+ +L+++FS YG V+ + +++++ T + RGFGFV FSDP+V
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPK-------------------NGSPGPYRSTKIFVGGLA 101
+ VL+ KH IDG+ VD K+A + +G+ G R+ KIFVGGL
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 102 STVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGK 161
T+ E F++YF+ +G + D+VVM D NT RPRGFGFIT+D+EEAVD V ++FH+LNGK
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 162 MVEVKRAVPKELSPGPN 178
VEVKRA+PK+ +PG N
Sbjct: 181 QVEVKRALPKDANPGAN 197
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 98/197 (49%), Positives = 138/197 (70%), Gaps = 19/197 (9%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
M++D K+FIGGISWDTN+ +L+++FS YG V+ + +++++ T + RGFGFV FSDP+V
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 EEVLKKKHKIDGKMVDVKKAAPK-------------------NGSPGPYRSTKIFVGGLA 101
+ VL+ KH IDG+ VD K+A + +G+ G R+ KIFVGGL
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 102 STVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGK 161
T+ E F++YF+ +G + D+VVM D NT RPRGFGFIT+D+EEAVD V ++FH+LNGK
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 162 MVEVKRAVPKELSPGPN 178
VEVKRA+PK+ +PG N
Sbjct: 181 QVEVKRALPKDANPGAN 197
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/192 (48%), Positives = 126/192 (65%), Gaps = 20/192 (10%)
Query: 1 MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
M++D K+F+GGIS +T + L+ +F+ YG V+ S I DRTTR RGFGFV FSD + A
Sbjct: 5 MDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSA 64
Query: 61 EEVLKKKHKIDGKMVDVKKAAPK--------------NGSPG------PYRSTKIFVGGL 100
L+ H I G+ V+V+KA P+ N G R+ KIFVGGL
Sbjct: 65 HNALQDTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGL 124
Query: 101 ASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
+ ++ +FK+YF++FG I D+VVM D T RPRGFGFIT+DSE++V SV +RSFH+LNG
Sbjct: 125 PANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNG 184
Query: 161 KMVEVKRAVPKE 172
+ VEVKRAVP+E
Sbjct: 185 RQVEVKRAVPRE 196
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAF-SDPAVAEEVLK 65
KIF+GG+ + + ++YF +G++ + V+++D T R RGFGF+ F S+ +V +++
Sbjct: 118 KIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMR 177
Query: 66 KKHKIDGKMVDVKKAAPKNGSPGPYRSTKI 95
H ++G+ V+VK+A P+ G+ G +KI
Sbjct: 178 SFHDLNGRQVEVKRAVPREGNAGSEGFSKI 207
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIFIGG++ +T + ++F YG++ +SVI+KDR T + RGFGF+ ++DP+V ++V++
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 67 KHKIDGKMVDVKKAAPKNGSPGP--YRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVV 124
H I+ K V++K+ P+ G+ G +R+ KIFVGG+ S VTE +F+ +F ++G +KD +
Sbjct: 106 SHIINSKQVEIKRTIPR-GAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQI 164
Query: 125 MCDPNTQRPRGFGFITYDSEEAVDSVF-LRSFHELNGKMVEVKRAVPKELSPGP 177
M D +T R RGFGF+T+D+EEAVD + + + E G VE+K+A PK+ + P
Sbjct: 165 MRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAPP 218
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 114/168 (67%), Gaps = 2/168 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIFIGG++ DT +YF YG++ +SVI+KDR T R RGFGF+ ++D +V ++V+++
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 67 KHKIDGKMVDVKKAAPKNGSP-GPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVM 125
H I+ K V++K+ PK S +++ KIFVGG+ +TV+E + K +F + G + + ++
Sbjct: 79 NHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEII 138
Query: 126 CDPNTQRPRGFGFITYDSEEAVDSVFLR-SFHELNGKMVEVKRAVPKE 172
D T+R RGFGF+ +DS++AVD++ + +++ VE+K+A PK+
Sbjct: 139 RDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ K+ + GI WD + L++Y S YG++ + +++K+R+T R+RGFG+V F+ A+EV
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 LKKKHKIDGKMVDVKKAAPKNGSPGPYRS-TKIFVGGLASTVTESDFKKYFDQFGTIKDL 122
L +H + +M++VK A PK P + T+IFV + +VTE F+ +F+++G I DL
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDL 121
Query: 123 VVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKE 172
+ D ++ RG GFIT+ + E+V+++ + HEL G V V RA PKE
Sbjct: 122 YMPKDQGSKMHRGIGFITFGNAESVENL-MSETHELGGSAVVVDRATPKE 170
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 47/211 (22%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
+IF+ I + R +F YG + + + KD+ ++ RG GF+ F + E ++
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 66 KKHKIDGKMVDVKKAAPKN----------------------------------------- 84
+ H++ G V V +A PK
Sbjct: 152 ETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPG 211
Query: 85 -----GSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFI 139
G P S KIFVG L D ++YF +FG I+D+ + DP RGFGF+
Sbjct: 212 PIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFV 271
Query: 140 TYDSEEAVDSVFLRSFHELNGKMVEVKRAVP 170
T+ E D V LR HE+ G V + A P
Sbjct: 272 TFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLR 153
K+ V G+ V K+Y ++G ++D +VM + +T R RGFG++T+ S + V L
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV-LS 63
Query: 154 SFHELNGKMVEVKRAVPKELSPGP 177
H L +M+EVK A PKE P
Sbjct: 64 GEHVLGDRMLEVKVATPKEEMRAP 87
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ K+ + GI WD + L++Y S YG++ + +++K+R+T R+RGFG+V F+ A+EV
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 LKKKHKIDGKMVDVKKAAPKNGSPGPYRS-TKIFVGGLASTVTESDFKKYFDQFGTIKDL 122
L +H + +M++VK A PK P + T+IFV + +VTE F+ +F+++G I DL
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDL 121
Query: 123 VVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKE 172
+ D ++ RG GFIT+ + E+V+++ + HEL G V V RA PKE
Sbjct: 122 YMPKDQGSKMHRGIGFITFGNAESVENL-MSETHELGGSAVVVDRATPKE 170
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 47/211 (22%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
+IF+ I + R +F YG + + + KD+ ++ RG GF+ F + E ++
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 66 KKHKIDGKMVDVKKAAPKN----------------------------------------- 84
+ H++ G V V +A PK
Sbjct: 152 ETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPG 211
Query: 85 -----GSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFI 139
G P S KIFVG L D ++YF +FG I+D+ + DP RGFGF+
Sbjct: 212 PIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFV 271
Query: 140 TYDSEEAVDSVFLRSFHELNGKMVEVKRAVP 170
T+ E D V LR HE+ G V + A P
Sbjct: 272 TFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLR 153
K+ V G+ V K+Y ++G ++D +VM + +T R RGFG++T+ S + V L
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV-LS 63
Query: 154 SFHELNGKMVEVKRAVPKELSPGP 177
H L +M+EVK A PKE P
Sbjct: 64 GEHVLGDRMLEVKVATPKEEMRAP 87
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ K+ + GI WD + L++Y S YG++ + +++K+R+T R+RGFG+V F+ A+EV
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 LKKKHKIDGKMVDVKKAAPKNGSPGPYRS-TKIFVGGLASTVTESDFKKYFDQFGTIKDL 122
L +H + +M++VK A PK P + T+IFV + +VTE F+ +F+++G I DL
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDL 121
Query: 123 VVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKE 172
+ D ++ RG GFIT+ + E+V+++ + HEL G V V RA PKE
Sbjct: 122 YMPKDQGSKMHRGIGFITFGNAESVENL-MSETHELGGSAVVVDRATPKE 170
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 47/211 (22%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
+IF+ I + R +F YG + + + KD+ ++ RG GF+ F + E ++
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 66 KKHKIDGKMVDVKKAAPKN----------------------------------------- 84
+ H++ G V V +A PK
Sbjct: 152 ETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPG 211
Query: 85 -----GSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFI 139
G P S KIFVG L D ++YF +FG I+D+ + DP RGFGF+
Sbjct: 212 PIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFV 271
Query: 140 TYDSEEAVDSVFLRSFHELNGKMVEVKRAVP 170
T+ E D V LR HE+ G V + A P
Sbjct: 272 TFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLR 153
K+ V G+ V K+Y ++G ++D +VM + +T R RGFG++T+ S + V L
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV-LS 63
Query: 154 SFHELNGKMVEVKRAVPKELSPGP 177
H L +M+EVK A PKE P
Sbjct: 64 GEHVLGDRMLEVKVATPKEEMRAP 87
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ K+ + GI WD + L++Y S YG++ + +++K+R+T R+RGFG+V F+ A+EV
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 64 LKKKHKIDGKMVDVKKAAPKNGSPGPYRS-TKIFVGGLASTVTESDFKKYFDQFGTIKDL 122
L +H + +M++VK A PK P + T+IFV + +VTE F+ +F+++G I DL
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDL 121
Query: 123 VVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKE 172
+ D ++ RG GFIT+ + E+V+++ + HEL G V V RA PKE
Sbjct: 122 YMPKDQGSKMHRGIGFITFGNAESVENL-MSETHELGGSAVVVDRATPKE 170
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 47/211 (22%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
+IF+ I + R +F YG + + + KD+ ++ RG GF+ F + E ++
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 66 KKHKIDGKMVDVKKAAPKN----------------------------------------- 84
+ H++ G V V +A PK
Sbjct: 152 ETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPG 211
Query: 85 -----GSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFI 139
G P S KIFVG L D ++YF +FG I+D+ + DP RGFGF+
Sbjct: 212 PIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFV 271
Query: 140 TYDSEEAVDSVFLRSFHELNGKMVEVKRAVP 170
T+ E D V LR HE+ G V + A P
Sbjct: 272 TFADEGVADRVSLRP-HEICGHEVAIDSATP 301
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLR 153
K+ V G+ V K+Y ++G ++D +VM + +T R RGFG++T+ S + V L
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV-LS 63
Query: 154 SFHELNGKMVEVKRAVPKELSPGP 177
H L +M+EVK A PKE P
Sbjct: 64 GEHVLGDRMLEVKVATPKEEMRAP 87
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
+++ KIF+G + +D + +L Q F G V + +I +R T R+RGFGFV S E
Sbjct: 119 SEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVER 178
Query: 63 VLKK--KHKIDGKMVDVKKAAPKNG----SPGPYRS-TKIFVGGLASTVTESDFKKYFDQ 115
+ K ++DG+++ V KAAP+ P + S + +VG L V S ++ F +
Sbjct: 179 AVNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSE 238
Query: 116 FGTIKDLVVMCDPNTQRPRGFGFITYDSE-EAVDSVFLRSFHELNGKMVEVKRA 168
G ++ V+ D T R RGFGF+T +E E D++ NG+ + V A
Sbjct: 239 HGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVA 292
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 89 PYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVD 148
P KIFVG L V + F+Q GT++ V+ + +T R RGFGF+T + E V+
Sbjct: 118 PSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVE 177
Query: 149 SVFLR-SFHELNGKMVEVKRAVPK 171
+ S EL+G+++ V +A P+
Sbjct: 178 RAVNKFSGFELDGRLLTVNKAAPR 201
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+ G+S +T LR FS+YG + E+++I D+ T R++G+GFV + A LK+
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKE 136
Query: 67 -KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVM 125
KIDG+M V + A + G S K+FVG + V+ F ++G I++ +
Sbjct: 137 PSKKIDGRMT-VTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLG 195
Query: 126 CDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV----PKELSPGPNHSP 181
D + + RGF F Y +EE + S ++G V K AV PK + P+ P
Sbjct: 196 FDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVICKFAVDNKKPKPVGQNPSGFP 255
Query: 182 L 182
+
Sbjct: 256 V 256
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FI G+ WDT LR FS YG++ E+++I D+ T +++G+GFV F A L++
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE 133
Query: 67 KHK-IDGKMVDVKKAAP----KNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKD 121
K IDG++ + AA N + KI+V + + +F +G I++
Sbjct: 134 PSKRIDGRVTVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLAHFSIYGEIEE 193
Query: 122 LVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV 169
+ D T R +GF Y + E ++ + G+ + K A+
Sbjct: 194 GPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQLNCKLAI 241
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
++ K+F+G +D + +L F G V + +I +R T +RGFGFV S AE
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 64 LKKKHKID--GKMVDVKKAAPKNGSPGPYRST--------KIFVGGLASTVTESDFKKYF 113
++K + D G+ + V KA+PK P +I+V LA V S ++ F
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF 226
Query: 114 DQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSVFLRSFHELNGKMVEVKRA 168
+ G I V+ D T R RGFGF+T D E D++ L G+ + V A
Sbjct: 227 SEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVA 282
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
+I++ ++W+ + RL Q FS +GK++ + ++ DR T R+RGFGFV SD + +
Sbjct: 206 LRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIA 265
Query: 66 KK--HKIDGKMVDVKKAA--PKNGS 86
++G+ + V A P+ GS
Sbjct: 266 ALDGQSLEGRTIRVSVAEDRPRRGS 290
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
++ K+F+G +D + +L F G V + +I +R T +RGFGFV S AE
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 64 LKKKHKID--GKMVDVKKAAPKNGSPGPYRST--------KIFVGGLASTVTESDFKKYF 113
++K + D G+ + V KA+PK P +I+V LA V S ++ F
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVF 226
Query: 114 DQFGTIKDLVVMCDPNTQRPRGFGFITYDSE 144
+ G I V+ D T R RGFGF+T E
Sbjct: 227 SEHGKIVSARVVYDRETGRSRGFGFVTMSDE 257
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
+A + KIF+ G+ WDT L FS YG++ + + D+ + +++G+GF+ F + A
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 62 EVLKK-KHKIDGKMVDVKKAAPKNGSPGPYRST--------------------KIFVGGL 100
LK+ + KI +M + A S GP + T KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLA-----SIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNV 237
Query: 101 ASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
+ +F +FG I++ + D T +P+GF Y S E+ E G
Sbjct: 238 GPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEG 297
Query: 161 KMVEVKRAV 169
++ ++A+
Sbjct: 298 HILHCQKAI 306
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
+A + KIF+ G+ WDT L FS YG++ + + D+ + +++G+GF+ F + A
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 62 EVLKK-KHKIDGKMVDVKKAAPKNGSPGPYRST--------------------KIFVGGL 100
LK+ + KI +M + A S GP + T KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLA-----SIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNV 237
Query: 101 ASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
+ +F +FG I++ + D T +P+GF Y S E+ E G
Sbjct: 238 GPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEG 297
Query: 161 KMVEVKRAV 169
++ ++A+
Sbjct: 298 HILHCQKAI 306
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
+A + KIF+ G+ WDT L FS YG++ + + D+ + +++G+GF+ F + A
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 62 EVLKK-KHKIDGKMVDVKKAAPKNGSPGPYRST--------------------KIFVGGL 100
LK+ + KI +M + A S GP + T KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLA-----SIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNV 237
Query: 101 ASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
+ +F +FG I++ + D T +P+GF Y S E+ E G
Sbjct: 238 GPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEG 297
Query: 161 KMVEVKRAV 169
++ ++A+
Sbjct: 298 HILHCQKAI 306
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
+A + KIF+ G+ WDT L FS YG++ + + D+ + +++G+GF+ F + A
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 62 EVLKK-KHKIDGKMVDVKKAAPKNGSPGPYRST--------------------KIFVGGL 100
LK+ + KI +M + A S GP + T KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLA-----SIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNV 237
Query: 101 ASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
+ +F +FG I++ + D T +P+GF Y S E+ E G
Sbjct: 238 GPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEG 297
Query: 161 KMVEVKRAV 169
++ ++A+
Sbjct: 298 HILHCQKAI 306
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
+A + KIF+ G+ WDT L FS YG++ + + D+ + +++G+GF+ F + A
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 62 EVLKK-KHKIDGKMVDVKKAAPKNGSPGPYRST--------------------KIFVGGL 100
LK+ + KI +M + A S GP + T KI++ +
Sbjct: 183 NALKEPQKKIGNRMTACQLA-----SIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNV 237
Query: 101 ASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
+ +F +FG I++ + D T +P+GF Y S E+ E G
Sbjct: 238 GPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEG 297
Query: 161 KMVEVKRAV 169
++ ++A+
Sbjct: 298 HILHCQKAI 306
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 9/172 (5%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WD L FS YG++ + + D+ + +++G+ F+ F LK+
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 67 KHKIDGKMVDVKKAA---------PKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
K+ G + A P Y KIFV ++S + ++F QFG
Sbjct: 226 PQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFG 285
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV 169
+ D + D T +P+GF Y + E+ G + ++AV
Sbjct: 286 EVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 9/172 (5%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WD L FS YG++ + + D+ + +++G+ F+ F LK+
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 67 KHKIDGKMVDVKKAA---------PKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
K+ G + A P Y KIFV ++S + ++F QFG
Sbjct: 226 PQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFG 285
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV 169
+ D + D T +P+GF Y + E+ G + ++AV
Sbjct: 286 EVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 9/172 (5%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+ WD L FS YG++ + + D+ + +++G+ F+ F LK+
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 67 KHKIDGKMVDVKKAA---------PKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
K+ G + A P Y KIFV ++S + ++F QFG
Sbjct: 226 PQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFG 285
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV 169
+ D + D T +P+GF Y + E+ G + ++AV
Sbjct: 286 EVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTLYCQKAV 337
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+F+GG++W+T +R+YF +G ++E+V+I D+ T R++G+GFV F DP A
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
Query: 66 KKHK-IDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 89 DPSPVIDGRRANCNLAS 105
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV 147
TK+FVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ EA
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 83
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+F+GG++W+T + +R YF +G+++E+V+I D+ T R++G+GFV F DP A +
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQ 84
Query: 66 KKHK-IDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 85 NPSPVIDGRRANCNIAS 101
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV 147
TK+FVGGLA + YF+QFG I + VV+ D T R +G+GF+T+ EA
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAA 79
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+F+GG++W+T + +R YF +G+++E+V+I D+ T R++G+GFV F DP A +
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQ 84
Query: 66 KKHK-IDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 85 NPSPVIDGRRANCNIAS 101
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV 147
TK+FVGGLA + YF+QFG I + VV+ D T R +G+GF+T+ EA
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAA 79
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDP---- 57
E D +F + +R + ++FS GKV + +I DR +RR++G G++ F D
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 58 -AVA--------EEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRST--KIFVGGLASTVTE 106
A+A + V+ K + + +V G GPY + K++VG L +TE
Sbjct: 271 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTE 330
Query: 107 SDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKM 162
S ++ F+ FGT++ + + D T +GFGFI + E ++ LNGK+
Sbjct: 331 SQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ ++G + ++ L + F G V+ + KDR T + +G+GFV F A+
Sbjct: 23 QDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYA 82
Query: 64 LKKKH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI-K 120
+K + K+ GK + V KA+ S +F+G L V E F FG I
Sbjct: 83 IKVLNMIKLYGKPIRVNKASQDKKSLD--VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 121 DLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGK 161
+ +M DP+T RGFGFI+YDS EA DS + +NG+
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDS----AIEAMNGQ 177
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDP---- 57
E D +F + +R + ++FS GKV + +I DR +RR++G G++ F D
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 58 -AVA--------EEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRST--KIFVGGLASTVTE 106
A+A + V+ K + + +V G GPY + K++VG L +TE
Sbjct: 271 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTE 330
Query: 107 SDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKM 162
S ++ F+ FGT++ + + D T +GFGFI + E ++ LNGK+
Sbjct: 331 SQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDP---- 57
E D +F + +R + ++FS GKV + +I DR +RR++G G++ F D
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 58 -AVA--------EEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRST--KIFVGGLASTVTE 106
A+A + V+ K + + +V G GPY + K++VG L +TE
Sbjct: 271 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTE 330
Query: 107 SDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKM 162
S ++ F+ FGT++ + + D T +GFGFI + E ++ LNGK+
Sbjct: 331 SQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+F+GG++W+T +R+YF +G ++E+V+I D+ T R++G+GFV F DP A
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
Query: 66 KKHK-IDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 89 DPSPVIDGRRANCNLAS 105
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV 147
TK+FVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ EA
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 83
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDP-AVAEEVLK 65
K+F+GG++W+T + +++YF +G+++E+V+I D+ T R++G+GFV F +P A +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 66 KKHKIDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 77 AAPIIDGRRANCNLAS 92
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TK+FVGGLA + KKYF+QFG I + VV+ D T R +G+GF+T+ +A +
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACV 75
Query: 153 RSFHELNGKMVEVKRA 168
+ ++G+ A
Sbjct: 76 DAAPIIDGRRANCNLA 91
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDP-AVAEEVLK 65
K+F+GG++W+T + +++YF +G+++E+V+I D+ T R++G+GFV F +P A +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 66 KKHKIDGKMVDVKKAA 81
IDG+ + A+
Sbjct: 77 AAPIIDGRRANCNLAS 92
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
TK+FVGGLA + KKYF+QFG I + VV+ D T R +G+GF+T+ +A +
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACV 75
Query: 153 RSFHELNGKMVEVKRA 168
+ ++G+ A
Sbjct: 76 DAAPIIDGRRANCNLA 91
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+FIGG+S+ T++ LR+ FS YG V+++ II DR T R+RGFGF+ F+ A L+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 66 K--KHKIDGKMVDVKKAAPK 83
++DG+ V V A +
Sbjct: 100 AMDNKELDGRTVRVNYATER 119
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSV 150
S K+F+GG++ + E+ ++ F ++G + D ++ D +T R RGFGFIT+ SEEA ++
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 151 FLRSFHELNGKMVEVKRAVPK 171
EL+G+ V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
K+FIGG+S+ T++ LR+ FS YG V+++ II DR T R+RGFGF+ F+ A L+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 66 K--KHKIDGKMVDVKKAAPK 83
++DG+ V V A +
Sbjct: 100 AMDNKELDGRTVRVNYATER 119
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSV 150
S K+F+GG++ + E+ ++ F ++G + D ++ D +T R RGFGFIT+ SEEA ++
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 151 FLRSFHELNGKMVEVKRAVPK 171
EL+G+ V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
KIF+GG++W+T + L++YF +G ++E+V+I DRTT +++G+GFV F DP A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 66 KKHK-IDGKMVDVKKAAPK 83
+ IDG+ + A K
Sbjct: 86 NPNPMIDGRRANCNLAYQK 104
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY 141
TKIFVGGLA K+YFDQFG I + VV+ D T + +G+GF+T+
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF 74
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
KIF+GG++W+T + L++YF +G ++E+V+I DRTT +++G+GFV F DP A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 66 KKHK-IDGKMVDVKKAAPK 83
+ IDG+ + A K
Sbjct: 86 NPNPMIDGRRANCNLAYQK 104
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY 141
TKIFVGGLA K+YFDQFG I + VV+ D T + +G+GF+T+
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF 74
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+GG++W+T + L++YF +G ++E+V+I DRTT +++G+GFV F DP A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-KIDGKMVDVKKAAPK 83
+ IDG+ + A K
Sbjct: 87 PNPMIDGRRANCNLAYQK 104
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 68 HKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCD 127
H K+ PK+ Y TKIFVGGLA K+YFDQFG I + VV+ D
Sbjct: 3 HTRQNKITMSLNVVPKHVGDTTY--TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITD 60
Query: 128 PNTQRPRGFGFITY 141
T + +G+GF+T+
Sbjct: 61 RTTGKSKGYGFVTF 74
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+GG++W+T + L++YF +G ++E+V+I DRTT +++G+GFV F DP A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-KIDGKMVDVKKAAPK 83
+ IDG+ + A K
Sbjct: 87 PNPMIDGRRANCNLAYQK 104
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 68 HKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCD 127
H K+ PK+ Y TKIFVGGLA K+YFDQFG I + VV+ D
Sbjct: 3 HTRQNKITMSLNVVPKHVGDTTY--TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITD 60
Query: 128 PNTQRPRGFGFITY 141
T + +G+GF+T+
Sbjct: 61 RTTGKSKGYGFVTF 74
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+GG++W+T +R YF +G ++E+VII D+ T +++G+GFV F DP A
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 67 KHK-IDGKMVDVKKAA 81
+ IDG+ + A+
Sbjct: 77 PNPVIDGRRANCNIAS 92
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV 147
TK+FVGGLA + + YF+QFG I + V++ D NT + +G+GF+T+ E+
Sbjct: 16 TKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESA 70
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++FIGG+ DT+ +R+ G ++E +IKDR T ++G+ FV + VA++ +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDLV 123
H + GK + + K+ ++F+G + T TE +F+K + G ++ +
Sbjct: 165 IHNKEFKGKTLRCLLSETKH---------RLFIGNIPKTWTEDEFRKAVEGVGPGVESID 215
Query: 124 VMCDPNTQ-RPRGFGFITY 141
++ DP Q R RGF F+ Y
Sbjct: 216 LIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++FIGG+ DT+ +R+ G ++E +IKDR T ++G+ FV + VA++ +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDLV 123
H + GK + + K+ ++F+G + T TE +F+K + G ++ +
Sbjct: 165 IHNKEFKGKTLRCLLSETKH---------RLFIGNIPKTWTEDEFRKAVEGVGPGVESID 215
Query: 124 VMCDPNTQ-RPRGFGFITY 141
++ DP Q R RGF F+ Y
Sbjct: 216 LIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++FIGG+ DT+ +R+ G ++E +IKDR T ++G+ FV + VA++ +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDLV 123
H + GK + + K+ ++F+G + T TE +F+K + G ++ +
Sbjct: 165 IHNKEFKGKTLRCLLSETKH---------RLFIGNIPKTWTEDEFRKAVEGVGPGVESID 215
Query: 124 VMCDPNTQ-RPRGFGFITY 141
++ DP Q R RGF F+ Y
Sbjct: 216 LIKDPQNQSRNRGFAFVLY 234
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 27/192 (14%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
I++G + ++ L F+ G+V + +I+++ T ++ G+GFV F A+AE+VL+
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQ-- 175
Query: 68 HKIDGKMV-DVKKAAPKN-------GSPGPYRSTK------IFVGGLASTVTESDFKKYF 113
+G M+ + +A N G G RS++ +FVG LA VT++ ++ F
Sbjct: 176 -NFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETF 234
Query: 114 -DQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG-----KMVEVKR 167
+F +IK V+ D NT R +G+GF+ + E S R+ E+NG + + V
Sbjct: 235 ASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDE----SERTRAMTEMNGVYCSSRPMRVGV 290
Query: 168 AVPKELSPGPNH 179
A PK+ P
Sbjct: 291 ATPKKTYGNPQQ 302
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 26/184 (14%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK-- 65
++IG + + ++ L FS G+V+ II+++ T + G+GF+ F + AE VL+
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 66 ---------KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYF-DQ 115
+ +++ + + P GP S IFVG LA VT+ ++ F
Sbjct: 77 NGTQMPGTEQTFRLNWASFGIGERRP---DAGPDHS--IFVGDLAPDVTDYLLQETFRTH 131
Query: 116 FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG-----KMVEVKRAVP 170
+G+++ V+ DPNT R +G+GF+ + E + R+ E+NG + + + A P
Sbjct: 132 YGSVRGAKVVTDPNTGRSKGYGFVKFSDESERN----RAMSEMNGVYCSTRPMRISAATP 187
Query: 171 KELS 174
K+ +
Sbjct: 188 KKTT 191
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 34/194 (17%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
N ++F+G + + + +L + F G V +I D++T R+RGFGFV + A EV
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTM---SSAAEVE 139
Query: 65 KKKHKIDGKMVDVKKAAPKNGSPGPYRS----------------------------TKIF 96
+++G +VD ++ G P P RS ++
Sbjct: 140 AAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVH 199
Query: 97 VGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFH 156
VG LA V + F + G + + V+ D + R RGFGF+T+ S + VDS +R+
Sbjct: 200 VGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSA-IRTLD 258
Query: 157 --ELNGKMVEVKRA 168
+LNG+ + V A
Sbjct: 259 GADLNGRAIRVSPA 272
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++ +G ++W + L F G+V+E+ +I DR + R+RGFGFV FS A+EV
Sbjct: 197 RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSS---ADEVDSA 253
Query: 67 KHKIDGKMVDVK--KAAPKNGSP 87
+DG ++ + + +P + P
Sbjct: 254 IRTLDGADLNGRAIRVSPADSRP 276
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 34/194 (17%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
N ++F+G + + + +L + F G V +I D++T R+RGFGFV + A EV
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTM---SSAAEVE 139
Query: 65 KKKHKIDGKMVDVKKAAPKNGSPGPYRS----------------------------TKIF 96
+++G +VD ++ G P P RS ++
Sbjct: 140 AAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVH 199
Query: 97 VGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFH 156
VG LA V + F + G + + V+ D + R RGFGF+T+ S + VDS +R+
Sbjct: 200 VGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSA-IRTLD 258
Query: 157 --ELNGKMVEVKRA 168
+LNG+ + V A
Sbjct: 259 GADLNGRAIRVSPA 272
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++ +G ++W + L F G+V+E+ +I DR + R+RGFGFV FS A+EV
Sbjct: 197 RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSS---ADEVDSA 253
Query: 67 KHKIDGKMVDVK--KAAPKNGSP 87
+DG ++ + + +P + P
Sbjct: 254 IRTLDGADLNGRAIRVSPADSRP 276
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 25/177 (14%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFS---DPAVAEEVL 64
+F+ +S T L++ F +G + +V+++D + ++ FGFV F D A A E L
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGK-SKCFGFVNFESTDDAARAVEAL 273
Query: 65 KKKHKIDGKMVDVKKAAPKNG---------------SPGPYRSTKIFVGGLASTVTESDF 109
K KID K V KA K+ + Y+ ++V L ++ +
Sbjct: 274 NGK-KIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKL 332
Query: 110 KKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVK 166
K+ F +GTI VM DPN RG GF+ + + E R+ E+NGKMV K
Sbjct: 333 KELFSSYGTITSCKVMRDPNGVS-RGSGFVAFSTPEEAS----RALLEMNGKMVASK 384
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 84/167 (50%), Gaps = 17/167 (10%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
IFI + + + L FS++G ++ + D + + ++G+GFV F A++ ++K
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQ-SKGYGFVQFDTEEAAQKAIEK- 181
Query: 68 HKIDGKMVDVKKA--------APKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI 119
++G +++ K+ + + + +FV L+ + T+ + KK F +FGTI
Sbjct: 182 --LNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTI 239
Query: 120 KDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVK 166
VVM D + + + FGF+ ++S + R+ LNGK ++ K
Sbjct: 240 TSAVVMRDGDG-KSKCFGFVNFESTDDA----ARAVEALNGKKIDDK 281
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++G + + +L F+ G+V+ + +D TTRR+ G+G+V +S+P A L
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL--- 92
Query: 68 HKIDGKMVDVKKAAPKNGSPGPYRSTK------------IFVGGLASTVTESDFKKYFDQ 115
DV P N P + IF+ L + F
Sbjct: 93 --------DVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSS 144
Query: 116 FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
FG I V D + Q +G+GF+ +D+EEA ++ +LNG ++ K+
Sbjct: 145 FGNILSCKVAVDGSGQS-KGYGFVQFDTEEAAQ----KAIEKLNGMLLNDKQ 191
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 44/60 (73%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+GG++W+T + LR++F YG ++E+VII D+ T R++G+GFV F D A++ ++
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 84 NGSP---GPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFIT 140
NGSP G TK+FVGGLA + +++F+++G I + V++ D T R +G+GF+T
Sbjct: 6 NGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVT 65
Query: 141 YDSEEAVDSVFLRSFHELNGK 161
+ ++ +NG+
Sbjct: 66 FKDADSAKKACEEPTVIINGR 86
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
++ K+F+G + + L F + V E IIKD+ TR +RG FV A++
Sbjct: 14 ESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKA 73
Query: 64 LKKKHKIDGKMVDVKKAAPKNGSPGPYR---------STKIFVGGLASTVTESDFKKYFD 114
+ H KK P SP + K+F+G L ++E + F
Sbjct: 74 VNACHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFS 125
Query: 115 QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVP 170
++GTIKDL ++ + Q +G F+ Y+++E L + +NGK +VP
Sbjct: 126 KYGTIKDLQILRG-SQQTSKGCAFLKYETKEQA----LAALEAINGKHKMEGSSVP 176
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 44/60 (73%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+GG++W+T + LR++F YG ++E+VII D+ T R++G+GFV F D A++ ++
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 84 NGSP---GPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFIT 140
NGSP G TK+FVGGLA + +++F+++G I + V++ D T R +G+GF+T
Sbjct: 6 NGSPSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVT 65
Query: 141 YDSEEAVDSVFLRSFHELNGK 161
+ ++ +NG+
Sbjct: 66 FKDADSAKKACEEPTVIINGR 86
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
N K+F+GGIS++T+++ L FS YG+V+++ II DR + R++GFGFV ++ EE
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYN---TVEEAS 99
Query: 65 KKKHKIDGK 73
+DG+
Sbjct: 100 SAIQALDGQ 108
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVF 151
TK+FVGG++ E F ++G + D ++ D + R +GFGF+TY++ EEA ++
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 152 LRSFHELNGKMVEVKRA 168
+L G+ V V A
Sbjct: 104 ALDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
N K+F+GGIS++T+++ L FS YG+V+++ II DR + R++GFGFV ++ EE
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYN---TVEEAS 99
Query: 65 KKKHKIDGK 73
+DG+
Sbjct: 100 SAIQALDGQ 108
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVF 151
TK+FVGG++ E F ++G + D ++ D + R +GFGF+TY++ EEA ++
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 152 LRSFHELNGKMVEVKRA 168
+L G+ V V A
Sbjct: 104 ALDGQDLYGRRVGVNFA 120
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 30/177 (16%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++ +S + L+ F AYG + +V+++D R++ FGFV F + AE+ K
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFEN---AEDAAKAV 268
Query: 68 HKIDGKMVD---------VKKAAPKNGSPGPYRST------------KIFVGGLASTVTE 106
++GK VD KK+ + G + T +++ L ++T+
Sbjct: 269 EALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
Query: 107 SDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
K+ F +FGTI +M DPN RG GF+ + + E R+ E+NGKM+
Sbjct: 329 EKLKEMFSEFGTITSYKIMRDPNGVS-RGSGFVAFSTPEEAS----RALGEMNGKMI 380
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 9/222 (4%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++G + + N +L F+ G+V+ + +D TRR+ G+G+V F++P A L
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 68 H--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVM 125
+ ++ K + V + ++ S + IF+ L T+ F FG I +
Sbjct: 94 NFTPMNNKSIRVMYSH-RDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIA 152
Query: 126 CDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRA-VPKELSPGPNHSPLSV 184
D + Q +G+GF+ +++E++ + + +LNG ++ K+ V L + LS
Sbjct: 153 TDGSGQS-KGYGFVQFEAEDSAQN----AIDKLNGMLINDKQVFVGHFLRKQDRDNVLSK 207
Query: 185 YNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGR 226
++ V + FT+ + G YG + A GR
Sbjct: 208 TKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGR 249
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
IFI + + + L FS++G++M I D + +++G+GFV F A+ +
Sbjct: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAID 178
Query: 66 KKH--KIDGKMVDVKKAAPKNGSPGPYRSTK---IFVGGLASTVTESDFKKYFDQFGTIK 120
K + I+ K V V K TK ++V L+ + TE D K F +GTI
Sbjct: 179 KLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTIT 238
Query: 121 DLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
V+M D + R + FGF+ +++ E ++ LNGK V+ K
Sbjct: 239 SAVLMRDADG-RSKCFGFVNFENAEDA----AKAVEALNGKKVDDKE 280
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
++ K+F+G + + L F + V E IIKD+ TR +RG FV A++
Sbjct: 14 ESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKA 73
Query: 64 LKKKHKIDGKMVDVKKAAPKNGSPGPYR---------STKIFVGGLASTVTESDFKKYFD 114
+ H KK P SP + K+F+G L ++E + F
Sbjct: 74 VNACHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFS 125
Query: 115 QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVP 170
++GTIKDL ++ + Q +G F+ Y+++E L + +NGK +VP
Sbjct: 126 KYGTIKDLQILRG-SQQTSKGCAFLKYETKEQA----LAALEAINGKHKMEGSSVP 176
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE--- 62
K+F+G + + +R F +G V+E +IKDR T + +G F+ ++ A++
Sbjct: 88 AKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 147
Query: 63 VLKKKHKIDGKM--VDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIK 120
L +H + G + + V+ A + G K+FVG L + + ++ F ++G I+
Sbjct: 148 ALHNRHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQASVKEVEEVFSKYGRIE 206
Query: 121 DLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
D+ +M D Q RG GF+ Y + + L + + LNG
Sbjct: 207 DVYLMRDDQKQS-RGCGFVKYSHRD----MALAAINALNG 241
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
++ K+F+G + + L F + V E IIKD+ TR +RG FV A++
Sbjct: 14 ESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKA 73
Query: 64 LKKKHKIDGKMVDVKKAAPKNGSPGPYR---------STKIFVGGLASTVTESDFKKYFD 114
+ H KK P SP + K+F+G L ++E + F
Sbjct: 74 VNACHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFS 125
Query: 115 QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVP 170
++GTIKDL ++ G F+ Y+++E L + +NGK +VP
Sbjct: 126 KYGTIKDLQILRGSQQTSKVGCAFLKYETKEQA----LAALEAINGKHKMEGSSVP 177
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+++G I + L + +G V ++ ++ D+ ++R+R F FV A +K
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 67 KH--KIDGKMVDV---KKAAPKNGSP----------GPYRSTKIFVGGLASTVTESDFKK 111
+ +I G+ + V +K G P PY K++VG LA VT KK
Sbjct: 121 LNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPY---KVYVGNLAKNVTSDSLKK 177
Query: 112 YFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHE--LNGKMVEVKRA 168
+F + G V P T + GFGF+T+ S+E V++ + SF+ L G+ + V +A
Sbjct: 178 FFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAA-ISSFNNALLEGQKIRVNKA 235
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 115/253 (45%), Gaps = 47/253 (18%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSA-YGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ IF+G ++ D L + FS+ Y V + ++ D T R++G+GFV F D + +
Sbjct: 189 DLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQA 248
Query: 64 LKKKHKI--DGKMVDVKKAAPKNGS---PG------------PYRSTKIFVGGLASTVTE 106
+ + + + + + + A P+ S PG +T IFVGGL S VT+
Sbjct: 249 MTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTD 308
Query: 107 SDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVK 166
D K+ F Q+G I + + +G GF+ + + + + +LNG M+ K
Sbjct: 309 EDLKQTFSQYGEIASVKIPVG------KGCGFVQFANRNNAE----EALQKLNGTMIG-K 357
Query: 167 RAVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNV-GGYGLCV-----DGTVS 220
+ V LS G N + + D + + Y PS + GYG + D ++
Sbjct: 358 QTV--RLSWGRNPA-YKQFRLD-------VGSWAGPYFPSPIYDGYGYAMPSPHHDPSMY 407
Query: 221 PIARGRIGFPLFG 233
P+A G G+P++G
Sbjct: 408 PLAYG--GYPIYG 418
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+N ++IG + ++ L + F++ G++ +I+++ + + G+GF F A AE+V
Sbjct: 95 ENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKV 154
Query: 64 LKKKHKIDGKMVD----VKKAAPKNGSPGPYRST--KIFVGGLASTVTESDFKKYF-DQF 116
L+ I D + A G G T IFVG LA+ VT+S + F +
Sbjct: 155 LQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSY 214
Query: 117 GTIKDLVVMCDPNTQRPRGFGFITYDSE 144
++K V+ D NT R +G+GF+ + E
Sbjct: 215 PSVKAAKVVYDANTGRSKGYGFVRFGDE 242
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 19/175 (10%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDP-AVA 60
E D +F + +R + ++FS GKV + +I DR +RR++G G++ F D +V
Sbjct: 198 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 257
Query: 61 EEVLKKKHKIDGKMVDVKKA-APKN----------GSPGPYRST--KIFVGGLASTVTES 107
+ + G+ V VK + A KN GPY + K++VG L +TE+
Sbjct: 258 MAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEA 317
Query: 108 DFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKM 162
+ ++ F+ FG I+ + + D T +GFGF+ + E ++ LNGK+
Sbjct: 318 NLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-----KAAQSLNGKL 367
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FIGG+S+ T++ LR+ FS YG+V+++ II DR T R+RGFGF+ F+ EE
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNS---VEEASSA 99
Query: 67 KHKIDGK 73
+DG+
Sbjct: 100 IQALDGQ 106
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSV 150
+TK+F+GG++ + E+ ++ F ++G + D ++ D T R RGFGFIT++S EEA ++
Sbjct: 41 TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100
Query: 151 FLRSFHELNGKMVEVKRA 168
+L+G+ V V A
Sbjct: 101 QALDGQDLHGRRVRVNYA 118
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+ F+GG++W T+ + L Q FS +G++ +S +I DR T R+RGFGFV F++ + +++
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 67 K--HKIDGKMVDVKKA 80
IDG+ + V +A
Sbjct: 69 MNGQDIDGRNITVNEA 84
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV-DSVFL 152
+ FVGGLA ++ F +FG I D V+ D T R RGFGF+T+ E+++ D++
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 153 RSFHELNGKMVEVKRA 168
+ +++G+ + V A
Sbjct: 69 MNGQDIDGRNITVNEA 84
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 99/189 (52%), Gaps = 25/189 (13%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
ADN +++G + ++ L + F++ G++ +I+++ T + G+GFV F+ AE+
Sbjct: 90 ADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEK 149
Query: 63 VLKKKHKIDGKMVDVKKAAPKNG---SPGPYRST------KIFVGGLASTVTESDFKKYF 113
VL+ + M + ++ N S G ++ + IFVG LA+ VT++ + F
Sbjct: 150 VLQTYAGM--LMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETF 207
Query: 114 -DQFGTIKDLVVMCDPNTQRPRGFGFITY--DSEEAVDSVFLRSFHELNG-----KMVEV 165
D++ ++K V+ D NT R +G+GF+ + D E + ++ +E+NG + + +
Sbjct: 208 SDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERS------KALNEMNGVFCSSRAMRI 261
Query: 166 KRAVPKELS 174
A P++ S
Sbjct: 262 GAATPRKSS 270
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K++ G + + + L YG ++ DR T ++RGF FV S E+
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMS---CVEDCNAV 170
Query: 67 KHKIDGKMVDVKKA------APKNGSPG-PYRSTKIFVGGLASTVTESDFKKYFDQFGTI 119
+DGK + PK P P K+FVG LA TVT + F + GT+
Sbjct: 171 IQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTV 230
Query: 120 KDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF-LRSFHELNGKMVEVKRA 168
V+ D T + RG+GF++Y ++ +D+ + EL G+ + V A
Sbjct: 231 VGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLA 280
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 16/100 (16%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK-- 65
+F+GGIS++T LR++FS YGKV+++ II+DR T R RGFGFV F+ A L+
Sbjct: 36 LFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 66 -------KKHKIDGKMVDVKKAAPKNG---SPGPYRSTKI 95
K + G+ V V A K+G S G Y S +
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYATEKSGPGFSGGGYHSCHL 131
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
+ F+GG++W T+ L + FS YG++++S II DR T R+RGFGFV F+D + ++
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 66 -KKHKIDGKMVDVKKA 80
+DG+ + V +A
Sbjct: 69 MNGQDMDGRNITVNEA 84
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV-DSVFL 152
+ FVGGLA +K F Q+G I D ++ D T R RGFGF+T+ E+++ D++
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 153 RSFHELNGKMVEVKRA 168
+ +++G+ + V A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+ F+GG++W T+ L + FS YG++++S II DR T R+RGFGFV F++ + ++
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 67 K--HKIDGKMVDVKKA 80
+DG+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV-DSVFL 152
+ FVGGLA +K F Q+G I D ++ D T R RGFGF+T+ +E+++ D++
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 153 RSFHELNGKMVEVKRA 168
+ +L+G+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FIGG+S++ + + LR F+ YG V+E+ +I DR T R+RGFGFV F+ +EE
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFT----SEESATS 92
Query: 67 KHKIDGKMV 75
+DG++V
Sbjct: 93 ALSMDGQVV 101
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
+ F+GG++W T+ L + FS YG++++S II DR T R+RGFGFV F++ + ++
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 66 -KKHKIDGKMVDVKKA 80
+DG+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAV-DSVFL 152
+ FVGGLA +K F Q+G I D ++ D T R RGFGF+T+ +E+++ D++
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 153 RSFHELNGKMVEVKRA 168
+ +L+G+ + V +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+GG+S+ T ++ L FS YG+V+E+ +I DR + +++G+GFV F+ AE+ + +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 67 KHK--IDGKMVDVKKAAP 82
++ ++G++V V A P
Sbjct: 93 MNEKALNGRVVFVDYAKP 110
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 74 MVDVKKAAPKNGSPGPYRST-------KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMC 126
M + K N S P+ T K+FVGGL+ TE F +G + + V+
Sbjct: 6 MASITKIVGYNNSVSPFLLTFRRAIAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVIT 65
Query: 127 DPNTQRPRGFGFITYDSE-EAVDSVFLRSFHELNGKMVEVKRAVP 170
D +++ +G+GF+T+ S+ EA ++ + LNG++V V A P
Sbjct: 66 DRISEKSKGYGFVTFASQDEAEKAITEMNEKALNGRVVFVDYAKP 110
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 9/158 (5%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
E ++ + W + +R F YGKV+ V + R RG FV P A
Sbjct: 85 ELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLH-VELSMYNKNRNRGLAFVEMGSPEEAS 143
Query: 62 EVLK--KKHKIDGKMVDVKKAAPKNGSPGPYRSTK-----IFVGGLASTVTESDFKKYFD 114
E L + ++ DG++++++ A PK P K +FV D K++FD
Sbjct: 144 EALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVANFPYEARSKDVKEFFD 203
Query: 115 Q-FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF 151
G + V+ N +RP G+GF++Y S++ D
Sbjct: 204 SGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 9/158 (5%)
Query: 2 EADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
E ++ + W + +R F YGKV+ V + R RG FV P A
Sbjct: 85 ELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLH-VELSMYNKNRNRGLAFVEMGSPEEAS 143
Query: 62 EVLK--KKHKIDGKMVDVKKAAPKNGSPGPYRSTK-----IFVGGLASTVTESDFKKYFD 114
E L + ++ DG++++++ A PK P K +FV D K++FD
Sbjct: 144 EALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVANFPYEARSKDVKEFFD 203
Query: 115 Q-FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF 151
G + V+ N +RP G+GF++Y S++ D
Sbjct: 204 SGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FIGG+S++ + + LR F+ YG V+E+ +I DR T R+RGFGFV F+ A L
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 67 K-HKIDGKMVDVKKAAPKNG 85
++G+ + V A +
Sbjct: 97 DGQDLNGRNIRVSYANDRQA 116
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVF 151
S+K+F+GGL+ V + + F +G + + V+ D T R RGFGF+ + SEE+ S
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 152 LRSFHELNGKMVEVKRAVPKE 172
+LNG+ + V A ++
Sbjct: 95 SMDGQDLNGRNIRVSYANDRQ 115
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+GG+SW +++ L+ FS++G V E I+ D+ + RARGFGFV FS+ A+
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSA--- 93
Query: 67 KHKIDGKMV 75
K +DGK +
Sbjct: 94 KDAMDGKAL 102
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDS 149
K+FVGGL+ +V E K F FG + ++ ++ D ++ R RGFGF+ + +E+A S
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKS 92
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+ +S+ T Q++L FS +G + E+ +I D+ T+R +GFGFV++ AE+ K
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 67 KHK--IDGKMVDVKKAAPKNGS 86
+ +DG+++ V+ A PK+ S
Sbjct: 68 LNGRIVDGRLIFVEHAKPKDSS 89
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSE-EAVDSVF 151
TK+FV L+ T+ + F FG + + ++ D NTQRP+GFGF++Y SE EA +
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 152 LRSFHELNGKMVEVKRAVPKELS 174
+ ++G+++ V+ A PK+ S
Sbjct: 67 ALNGRIVDGRLIFVEHAKPKDSS 89
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 94/195 (48%), Gaps = 23/195 (11%)
Query: 3 ADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
AD + ++IG + + ++ L F G++ +I+++ T ++ G+GF+ F+ A AE
Sbjct: 56 ADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAE 115
Query: 62 EVLK-----------KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFK 110
VL+ + ++++ + + + GP + IFVG LA+ VT+ +
Sbjct: 116 RVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDD-GPDHT--IFVGDLAADVTDYLLQ 172
Query: 111 KYFD-QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV 169
+ F ++ ++K V+ D T R +G+GF+ + E +R+ E+ G + +
Sbjct: 173 ETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQ----MRAMTEMQGVLCSTR--- 225
Query: 170 PKELSPGPNHSPLSV 184
P + P N +P +
Sbjct: 226 PMRIGPATNKNPAAT 240
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 8 IFIGGISWDTNQRRLRQYFSA-YGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
IF+G ++ D L++ F A Y V + ++ DR T R++G+GFV F+D + +
Sbjct: 157 IFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTE 216
Query: 67 KHKIDGKMVDVKKAAPKNGSPG----PYRS--------------TKIFVGGLASTVTESD 108
+ ++ N +P P S T IFVG L VT+
Sbjct: 217 MQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDH 276
Query: 109 FKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
++ F Q+G +LV + P+ +R GF+ + + + LNG ++
Sbjct: 277 LRQVFTQYG---ELVHVKIPSGKR---CGFVQFSDRSCAEE----AIRVLNGTLL 321
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 45/223 (20%)
Query: 8 IFIGGISWDTNQRRLRQYF-SAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
IF+G ++ D + L + F + Y V + ++ DRTT R +G+GFV F+D + E ++
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADES---EQMRA 225
Query: 67 KHKIDGKMVDVK-----------------KAAPKNGSPGPYR-----STKIFVGGLASTV 104
++ G + + KA+ +N G +T IFVG L V
Sbjct: 226 MTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNV 285
Query: 105 TESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSVFLRSFHELNGKMV 163
T+ K+ F Q+G +LV + P+ +R GF+ + D A +++ + + L G+ V
Sbjct: 286 TDEHLKQVFTQYG---ELVHVKIPSGKR---CGFVQFADRSSAEEALRVLNGTLLGGQNV 339
Query: 164 EV---KRAVPKELSPGPNHSPLSVYNYDLSGVNSFINGFTQGY 203
+ + K+ PN +G +S+ G+ QGY
Sbjct: 340 RLSWGRSPANKQTQQDPNQ---------WNGSSSYFGGYAQGY 373
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 15/184 (8%)
Query: 3 ADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
AD K ++IG + + ++ L FS G+V +I+++ T ++ G+GF+ F A AE
Sbjct: 70 ADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAE 129
Query: 62 EVLKKKHKI----DGKMVDVKKAAPKNGSPGPYRST--KIFVGGLASTVTESDFKKYF-D 114
VL+ + G+ + A +G S IFVG LA+ V++ + F
Sbjct: 130 RVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRT 189
Query: 115 QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELS 174
++ ++K V+ D T R +G+GF+ + A +S +R+ E+ G + + P +
Sbjct: 190 RYNSVKGAKVVIDRTTGRTKGYGFVRF----ADESEQMRAMTEMQGVLCSTR---PMRIG 242
Query: 175 PGPN 178
P N
Sbjct: 243 PASN 246
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
++F+G + + + +L Q F G V+ I+ D T R+RGF FV + AEE ++
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 66 --------KKHKIDGKMVDVKKAAPKNGSPGPYR-----STKIFVGGLASTVTESDFKKY 112
+ K++ V + + GS YR KI+ G L +T +K
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGS--TYRGYVDSPHKIYAGNLGWDMTSQYLRKA 226
Query: 113 FDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFH--ELNGKMVEVKRAV 169
F + + V+ + N + RG+GF+++++ E V+ V L + + E+ G+ + +K AV
Sbjct: 227 FAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVE-VALSAMNGVEVQGRPLRLKLAV 284
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
++F+G + + + +L Q F G V+ I+ D T R+RGF FV + AEE ++
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 66 --------KKHKIDGKMVDVKKAAPKNGSPGPYR-----STKIFVGGLASTVTESDFKKY 112
+ K++ V + + GS YR KI+ G L +T +K
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGS--TYRGYVDSPHKIYAGNLGWDMTSQYLRKA 226
Query: 113 FDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFH--ELNGKMVEVKRAV 169
F + + V+ + N + RG+GF+++++ E V+ V L + + E+ G+ + +K AV
Sbjct: 227 FAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVE-VALSAMNGVEVQGRPLRLKLAV 284
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
D ++++G + + +L F+ G V+ I+ DR T R+RGF FV A+E
Sbjct: 107 DAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEA 166
Query: 64 LKKKHKIDGKMVDVKKA------APKNGS--------PGPYR-----STKIFVGGLASTV 104
++ DG V + A PK G YR KI+ G L +
Sbjct: 167 IR---MFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGM 223
Query: 105 TESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVE 164
D + FD+ + ++ + + R RGFGF+T+++ E +++ + + +NG VE
Sbjct: 224 NSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEA----ALNAMNG--VE 277
Query: 165 VK 166
V+
Sbjct: 278 VQ 279
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 22/163 (13%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+F+ + + + L F+ +G V+ + D + ++ G+GFV + + A+ ++K
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQYDNHESAKCAIEK- 74
Query: 68 HKIDGKMVDVKKA----------APKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
+DG ++ KKA +NGSP + T ++V L T T+ D KK F +G
Sbjct: 75 --LDGMLIKDKKAFVGYFIRRQERSENGSP---KFTNVYVKNLLETDTDEDLKKLFSTYG 129
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNG 160
I V+M D N + FGF+ + S ++ + + +LNG
Sbjct: 130 VITSAVIMKDENGN-SKCFGFVNFQSPDSAAA----AVEKLNG 167
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+++IGGI +T+++ LR + + G+V E ++K + A+G+ FV F +A + LK+
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKG---KEAKGYAFVTFKTKELASKALKE 158
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDLVVM 125
+ + K +K SP + ++F+G + T D KK + G + + ++
Sbjct: 159 LNNSEFKGRKIK------CSPSQVKH-RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELL 211
Query: 126 CDPN-TQRPRGFGFITY 141
DP + R RGF FI Y
Sbjct: 212 KDPQSSSRNRGFAFIEY 228
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+++IGGI +T+++ LR + + G+V E ++K + A+G+ FV F +A + LK+
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKG---KEAKGYAFVTFKTKELASKALKE 158
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDLVVM 125
+ + K +K SP + ++F+G + T D KK + G + + ++
Sbjct: 159 LNNSEFKGRKIK------CSPSQVKH-RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELL 211
Query: 126 CDPN-TQRPRGFGFITY 141
DP + R RGF FI Y
Sbjct: 212 KDPQSSSRNRGFAFIEY 228
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+++IGGI +T+++ LR + + G+V E ++K + A+G+ FV F +A + LK+
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKG---KEAKGYAFVTFKTKELASKALKE 158
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDLVVM 125
+ + K +K SP + ++F+G + T D KK + G + + ++
Sbjct: 159 LNNSEFKGRKIK------CSPSQVKH-RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELL 211
Query: 126 CDPN-TQRPRGFGFITY 141
DP + R RGF FI Y
Sbjct: 212 KDPQSSSRNRGFAFIEY 228
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
+++IGGI +T+++ LR + + G+V E ++K + A+G+ FV F +A + LK+
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKG---KEAKGYAFVTFKTKELASKALKE 158
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT-IKDLVVM 125
+ + K +K SP + ++F+G + T D KK + G + + ++
Sbjct: 159 LNNSEFKGRKIK------CSPSQVKH-RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELL 211
Query: 126 CDPN-TQRPRGFGFITY 141
DP + R RGF FI Y
Sbjct: 212 KDPQSSSRNRGFAFIEY 228
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 11/79 (13%)
Query: 3 ADNCKIFIGGI--------SWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAF 54
A K+FIGGI S+ T++ LR+ FS YG+V+++ II DR T R+RGFGF+ F
Sbjct: 39 APTTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITF 98
Query: 55 SDPAVAEEVLKKKHKIDGK 73
+ EE +DG+
Sbjct: 99 NS---VEEASSAIQALDGQ 114
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 92 STKIFVGGLAS--------TVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS 143
+TK+F+GG+ + E+ ++ F ++G + D ++ D T R RGFGFIT++S
Sbjct: 41 TTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNS 100
Query: 144 -EEAVDSVFLRSFHELNGKMVEVKRA 168
EEA ++ +L+G+ V V A
Sbjct: 101 VEEASSAIQALDGQDLHGRRVRVNYA 126
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 90/186 (48%), Gaps = 22/186 (11%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK-- 65
++IG + + ++ L F G++ +I+++ T ++ G+GF+ F+ A AE VL+
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 66 ---------KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFD-Q 115
+ ++++ + + + GP + IFVG LA+ VT+ ++ F +
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDD-GPDHT--IFVGDLAADVTDYLLQETFRAR 178
Query: 116 FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSP 175
+ ++K V+ D T R +G+GF+ + E +R+ E+ G + + P + P
Sbjct: 179 YNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQ----MRAMTEMQGVLCSTR---PMRIGP 231
Query: 176 GPNHSP 181
N +P
Sbjct: 232 ATNKNP 237
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 3 ADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
AD + ++IG + + ++ L F G++ +I+++ T ++ G+GF+ F+ A AE
Sbjct: 56 ADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAE 115
Query: 62 EVLK-----------KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFK 110
VL+ + ++++ + + + GP + IFVG LA+ VT+ +
Sbjct: 116 RVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDD-GPDHT--IFVGDLAADVTDYLLQ 172
Query: 111 KYFD-QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV 169
+ F ++ ++K V+ D T R +G+GF+ + E +R+ E+ G + +
Sbjct: 173 ETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADE----GEQMRAMTEMQGVLCSTR--- 225
Query: 170 PKELSPGPNHSP 181
P + P N +P
Sbjct: 226 PMRIGPATNKNP 237
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 3 ADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAE 61
AD + ++IG + + ++ L F G++ +I+++ T ++ G+GF+ F+ A AE
Sbjct: 56 ADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAE 115
Query: 62 EVLK-----------KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFK 110
VL+ + ++++ + + + GP + IFVG LA+ VT+ +
Sbjct: 116 RVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDD-GPDHT--IFVGDLAADVTDYLLQ 172
Query: 111 KYFD-QFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAV 169
+ F ++ ++K V+ D T R +G+GF+ + E +R+ E+ G + +
Sbjct: 173 ETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADE----GEQMRAMTEMQGVLCSTR--- 225
Query: 170 PKELSPGPNHSP 181
P + P N +P
Sbjct: 226 PMRIGPATNKNP 237
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 38/250 (15%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+FI + + + L + FS +G V+ + D + ++G GFV F + A+ ++K
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIEK- 172
Query: 68 HKIDGKMVDVKKA-------APKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIK 120
+DG +++ KK + SP + T ++V L+ + T D K+ F+ FG I
Sbjct: 173 --LDGMLMNDKKVYVGYFVRCQERSSP---KFTNVYVKNLSESYTYEDLKQLFNSFGVIT 227
Query: 121 DLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELN------GKMVEVKRAVPK--- 171
+++M N + FGF+ + S ++ + + +LN GK++ V RA K
Sbjct: 228 SVLIMKYDNG-NSKCFGFVNFQSSDSAAT----AVEKLNGSTTNDGKVLFVGRAQKKSER 282
Query: 172 --ELSPGPNHSPLSVYNYDLSGVNSFINGFTQGYCPSNV----GGYGLCVDGTVSPIARG 225
EL L Y G N ++ + + +G V ARG
Sbjct: 283 EAELKAFFEQEKLKRYE-KFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARG 341
Query: 226 R---IGFPLF 232
R +GF F
Sbjct: 342 RSKGVGFVAF 351
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 4 DNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+N ++IG + ++ L + F++ G++ +I+++ + + G+GF F A AE+V
Sbjct: 95 ENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKV 154
Query: 64 LKKKHKIDGKMVD----VKKAAPKNGSPGPYRST--KIFVGGLASTVTESDFKKYF-DQF 116
L+ I D + A G G T IFVG LA+ VT+S + F +
Sbjct: 155 LQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSY 214
Query: 117 GTIKDLVVMCDPNTQRPRGFGFITYDSE 144
++K V+ D NT R +G+GF+ + E
Sbjct: 215 PSVKAAKVVYDANTGRSKGYGFVRFGDE 242
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++ + D ++ LR+ FS++GK++ + KD + ++GFGFV F +P A+ ++
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 68 H--KIDGKMVDVKKAAPKNGSPG---------------PYRSTKIFVGGLASTVTESDFK 110
+ ++ K++ V +A K Y+ + I+V + V++ +
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 111 KYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFH--ELNGKMVEVKRA 168
+F GTI +M D + +GFGF+ + + E + + SFH +GK + V A
Sbjct: 310 DHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKA-VNSFHGFMFHGKPLYVSLA 367
Query: 169 VPKE 172
KE
Sbjct: 368 QRKE 371
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+F+ ++ + L F +G ++ S ++ + ++G+GFV F A +++
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGK-SKGYGFVQFETEESANAAIERL 158
Query: 68 --HKIDGKMVDVKKAAPKNG--SPGP-YRSTKIFVGGLASTVTESDFKKYFDQFGTIKDL 122
+ + K + V K K+ S GP R T +++ L ++E+ ++ F FG I L
Sbjct: 159 NGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISL 218
Query: 123 VVMCDPNTQRPRGFGFITYDS-EEAVDSVFLRSFHELNGKMVEVKRAVPK 171
V D N +GFGF+ +D+ E+A ++ + +L K++ V RA K
Sbjct: 219 AVAKDSNGM-SKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKK 267
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVL 64
+ K+++GGIS+ T+ LR+ F+ YG V+++ +I DR R++GFGFV F+ A L
Sbjct: 39 SAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAAL 98
Query: 65 K--KKHKIDGKMVDVKKAAPK 83
+ ++ G+ V V A +
Sbjct: 99 QAMDNQELHGRTVRVNYAQER 119
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 92 STKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSV 150
S K++VGG++ + ++ ++ F ++G + D V+ D R +GFGF+T+ SEEA ++
Sbjct: 39 SAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAAL 98
Query: 151 FLRSFHELNGKMVEVKRA 168
EL+G+ V V A
Sbjct: 99 QAMDNQELHGRTVRVNYA 116
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 26/174 (14%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFS---DPAVAE 61
N +++G + N+ +L FS +V+ + +D+T R + G+ +V F+ D A A+
Sbjct: 29 NASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAK 88
Query: 62 EVL------KKKHKIDGKMVD--VKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYF 113
E+L +K +I D V+K+ N +F+ L +++ F
Sbjct: 89 ELLNFTPLNEKPIRIMFSQRDPSVRKSGSGN----------VFIKNLDTSIDHKALHDTF 138
Query: 114 DQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
FG + V D N Q +G+GF+ +D+EEA S + +L+G ++ K+
Sbjct: 139 AAFGPVLSCKVALDGNGQS-KGYGFVQFDNEEAAKS----AIKQLDGMLINDKQ 187
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 26/174 (14%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFS---DPAVAE 61
N +++G + N+ +L FS +V+ + +D+T R + G+ +V F+ D A A+
Sbjct: 29 NASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAK 88
Query: 62 EVL------KKKHKIDGKMVD--VKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYF 113
E+L +K +I D V+K+ N +F+ L +++ F
Sbjct: 89 ELLNFTPLNEKPIRIMFSQRDPSVRKSGSGN----------VFIKNLDTSIDHKALHDTF 138
Query: 114 DQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKR 167
FG + V D N Q +G+GF+ +D+EEA S + +L+G ++ K+
Sbjct: 139 AAFGPVLSCKVALDGNGQS-KGYGFVQFDNEEAAKS----AIKQLDGMLINDKQ 187
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 2 EADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
+A C+ +++G I + + L + F + G + +I+ + +GFV + D A A
Sbjct: 55 DASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIR----KEKSSYGFVDYHDRASA 110
Query: 61 EEVLKKKH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT 118
+ H ++ G+ + V A + +FVG L+ VT++ F + T
Sbjct: 111 ALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTT 170
Query: 119 IKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
D VM D T R +G+GF+++ + S + +++ GK +
Sbjct: 171 CSDARVMWDHKTGRSKGYGFVSFRDHQDAQS----AINDMTGKWL 211
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 2 EADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
+A C+ +++G I + + L + F + G + +I+ + +GFV + D A A
Sbjct: 55 DASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIR----KEKSSYGFVDYHDRASA 110
Query: 61 EEVLKKKH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT 118
+ H ++ G+ + V A + +FVG L+ VT++ F + T
Sbjct: 111 ALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTT 170
Query: 119 IKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
D VM D T R +G+GF+++ + S + +++ GK +
Sbjct: 171 CSDARVMWDHKTGRSKGYGFVSFRDHQDAQS----AINDMTGKWL 211
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 2 EADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA 60
+A C+ +++G I + + L + F + G + +I+ + +GFV + D A A
Sbjct: 39 DASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIR----KEKSSYGFVDYHDRASA 94
Query: 61 EEVLKKKH--KIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT 118
+ H ++ G+ + V A + +FVG L+ VT++ F + T
Sbjct: 95 ALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTT 154
Query: 119 IKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
D VM D T R +G+GF+++ + S + +++ GK +
Sbjct: 155 CSDARVMWDHKTGRSKGYGFVSFRDHQDAQS----AINDMTGKWL 195
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 5 NCKIFIGGISWDTNQRRLRQYFS-AYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEV 63
+ IF+G ++ D L + FS Y V + ++ D T R++G+GFV F D +
Sbjct: 186 DLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKA 245
Query: 64 LKKKHKI--DGKMVDVKKAAPK-----------NGSPGPYRS----TKIFVGGLASTVTE 106
L + + + + + + A P+ NG+P + T IFVGGL + T
Sbjct: 246 LNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATA 305
Query: 107 SDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY----DSEEAVDSV 150
D ++ F Q+G I + + +G GF+ + ++EEA+ +
Sbjct: 306 EDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKL 347
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 2 EADNCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAF---SDP 57
++ C+ +++G I ++ L++ FS+ G + +I+ + +GFV + S
Sbjct: 41 DSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIR----KEKSSYGFVDYFDRSSA 96
Query: 58 AVAEEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
A+A L ++ I G+ + V A + IFVG L+ VT++ F +
Sbjct: 97 AIAIVTLNGRN-IFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYS 155
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
+ D VM D T R RGFGF+++ +++ S + ++L GK +
Sbjct: 156 SCSDARVMWDQKTGRSRGFGFVSFRNQQEAQS----AINDLTGKWL 197
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 8/170 (4%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+F+ ++ + L F YG ++ S I + + ++GFG++ F A ++K
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGK-SKGFGYIQFDSEESANVAIQKM 163
Query: 68 H--KIDGKMVDVKKAAPKNGSPGP---YRSTKIFVGGLASTVTESDFKKYFDQFGTIKDL 122
+ + K + V K K+ P + T ++V L VTE + F FG I L
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSL 223
Query: 123 VVMCDPNTQRPRGFGFITYDS-EEAVDSVFLRSFHELNGKMVEVKRAVPK 171
+ D N Q +GFGF+ YDS ++A ++ + K++ V RA K
Sbjct: 224 AIKKDENGQ-SKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKK 272
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 90 YRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDS 149
+ STK+F+ GL+ E+ + F+Q G I ++ V+C+ T +G+GF+ ++SE A +
Sbjct: 30 HSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAAT 89
Query: 150 VFLRSFHELNGKMVEVKR 167
+ EL+G++V+ +R
Sbjct: 90 ----ARKELHGQIVDGRR 103
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FI G+S++TN+ LR F +G+++E +I + T ++G+GFV F+ A K+
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 67 KHK--IDGKMVDVKKA 80
H +DG+ + V A
Sbjct: 94 LHGQIVDGRRIRVGYA 109
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 95 IFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFLR 153
++V GL+ +T+ + +K+F G + D+ ++ DP T+ RGFGF+T D+ EEA V
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 154 SFHELNGKMVEVKRA 168
+ L G+++ V++A
Sbjct: 107 NRSVLEGRVITVEKA 121
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++ G+S +R L ++FSA GKV++ ++ D TR +RGFGFV A+ +K
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 68 HK--IDGKMVDVKKA 80
++ ++G+++ V+KA
Sbjct: 107 NRSVLEGRVITVEKA 121
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 38/250 (15%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESV-IIKD-RTTRRARGFGFVAFSDPAVAE--- 61
++FIG I ++ L++ + G + +V ++KD + RGF F+ + + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 62 -EVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTK-IFVGGLASTVTESDFKKYFDQFGTI 119
+++ K+ V A PKN K ++V L VT+ KK F+ G I
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKI 310
Query: 120 KDLVVMCDPNTQRPRGFGFITY-DSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPGPN 178
+V+ + Q GF+ + + A+ ++ +EL+G+ +E A P+
Sbjct: 311 TKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQA------ 364
Query: 179 HSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRIGFP--LFGSGY 236
D V S N TQG PS P+ G +G P G+GY
Sbjct: 365 ---------DQKAVVS--NTQTQGLLPS-----------YPPPVGYGLVGNPYGALGAGY 402
Query: 237 GMSPNFEPVL 246
G +P++
Sbjct: 403 GAPGLAQPLM 412
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++GGI D L+++ G+V++ I+K + +GF FV + + +A + +++
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHKID--GKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG---TIKD 121
+ + G+ + + KN ++F+G + + E D KK G T +
Sbjct: 171 LNNTEFKGRKIKCSTSQAKN---------RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVE 221
Query: 122 LVVMCDPNTQRPRGFGFITYDSEEAVD 148
LV N RGF FI Y + + +
Sbjct: 222 LVKDMK-NISNNRGFAFIDYHNNQCAE 247
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 38/250 (15%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESV-IIKD-RTTRRARGFGFVAFSDPAVAE--- 61
++FIG I ++ L++ + G + +V ++KD + RGF F+ + + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 62 -EVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTK-IFVGGLASTVTESDFKKYFDQFGTI 119
+++ K+ V A PKN K ++V L VT+ KK F+ G I
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKI 310
Query: 120 KDLVVMCDPNTQRPRGFGFITY-DSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPGPN 178
+V+ + Q GF+ + + A+ ++ +EL+G+ +E A P+
Sbjct: 311 TKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQA------ 364
Query: 179 HSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRIGFP--LFGSGY 236
D V S N TQG PS P+ G +G P G+GY
Sbjct: 365 ---------DQKAVVS--NTQTQGLLPS-----------YPPPVGYGLVGNPYGALGAGY 402
Query: 237 GMSPNFEPVL 246
G +P++
Sbjct: 403 GAPGLAQPLM 412
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++GGI D L+++ G+V++ I+K + +GF FV + + +A + +++
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHKID--GKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG---TIKD 121
+ + G+ + + KN ++F+G + + E D KK G T +
Sbjct: 171 LNNTEFKGRKIKCSTSQAKN---------RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVE 221
Query: 122 LVVMCDPNTQRPRGFGFITYDSEEAVD 148
LV N RGF FI Y + + +
Sbjct: 222 LVKDMK-NISNNRGFAFIDYHNNQCAE 247
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 38/250 (15%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESV-IIKD-RTTRRARGFGFVAFSDPAVAE--- 61
++FIG I ++ L++ + G + +V ++KD + RGF F+ + + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGR 250
Query: 62 -EVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTK-IFVGGLASTVTESDFKKYFDQFGTI 119
+++ K+ V A PKN K ++V L VT+ KK F+ G I
Sbjct: 251 QKMMSPSFKLGDNSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKI 310
Query: 120 KDLVVMCDPNTQRPRGFGFITY-DSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPGPN 178
+V+ + Q GF+ + + A+ ++ +EL+G+ +E A P+
Sbjct: 311 TKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQA------ 364
Query: 179 HSPLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRIGFP--LFGSGY 236
D V S N TQG PS P+ G +G P G+GY
Sbjct: 365 ---------DQKAVVS--NTQTQGLLPS-----------YPPPVGYGLVGNPYGALGAGY 402
Query: 237 GMSPNFEPVL 246
G +P++
Sbjct: 403 GAPGLAQPLM 412
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++GGI D L+++ G+V++ I+K + +GF FV + + +A + +++
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHKID--GKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG---TIKD 121
+ + G+ + + KN ++F+G + + E D KK G T +
Sbjct: 171 LNNTEFKGRKIKCSTSQAKN---------RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVE 221
Query: 122 LVVMCDPNTQRPRGFGFITYDSEEAVD 148
LV N RGF FI Y + + +
Sbjct: 222 LVKDMK-NISNNRGFAFIDYHNNQCAE 247
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
++F+GG+ D + LR+ FS G V E ++ + T++ +GF F+ F + A+ +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 66 -KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT--IKDL 122
K I+GK V + S +++G + T T+ K+ +G ++D+
Sbjct: 275 LKNPVINGKQCGVTPSQD---------SDTLYLGNICKTWTKEALKEKLKHYGVTNVEDI 325
Query: 123 VVMCDPNTQ-RPRGFGFITYDSEEAVDSVFLR 153
++ D N + RGF F+ + S F R
Sbjct: 326 TLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKR 357
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFL 152
++FVGGL TE D +K F + G + ++ +M +P T++ +GF F+ +++ E+A +V
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 153 RSFHELNGKMVEV 165
+NGK V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
++F+GG+ D + LR+ FS G V E ++ + T++ +GF F+ F + A+ +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 66 -KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT--IKDL 122
K I+GK V + S +++G + T T+ K+ +G ++D+
Sbjct: 275 LKNPVINGKQCGVTPSQD---------SDTLYLGNICKTWTKEALKEKLKHYGVTNVEDI 325
Query: 123 VVMCDPNTQ-RPRGFGFITYDSEEAVDSVFLR 153
++ D N + RGF F+ + S F R
Sbjct: 326 TLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKR 357
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFL 152
++FVGGL TE D +K F + G + ++ +M +P T++ +GF F+ +++ E+A +V
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 153 RSFHELNGKMVEV 165
+NGK V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+F+ G+S+ T+++ LR F +G+++E +I D+ ++R++G+ F+ ++ A LK+
Sbjct: 193 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKE 252
Query: 67 KH--KIDGKM--VDVKKAAPKNGSPGPYR 91
+ I+G M VDV K P + G R
Sbjct: 253 MNGKIINGWMIVVDVAKTTPPRYNKGHAR 281
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
++F+GG+ D + LR+ FS G V E ++ + T++ +GF F+ F + A+ +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 66 -KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT--IKDL 122
K I+GK V + S +++G + T T+ K+ +G ++D+
Sbjct: 276 LKNPVINGKQCGVTPSQD---------SDTLYLGNICKTWTKEALKEKLKHYGVTNVEDI 326
Query: 123 VVMCDPNTQ-RPRGFGFITYDSEEAVDSVFLR 153
++ D N + RGF F+ + S F R
Sbjct: 327 TLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKR 358
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFL 152
++FVGGL TE D +K F + G + ++ +M +P T++ +GF F+ +++ E+A +V
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 153 RSFHELNGKMVEV 165
+NGK V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
++F+GG+ D + LR+ FS G V E ++ + T++ +GF F+ F + A+ +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 66 -KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGT--IKDL 122
K I+GK V + S +++G + T T+ K+ +G ++D+
Sbjct: 276 LKNPVINGKQCGVTPSQD---------SDTLYLGNICKTWTKEALKEKLKHYGVTNVEDI 326
Query: 123 VVMCDPNTQ-RPRGFGFITYDSEEAVDSVFLR 153
++ D N + RGF F+ + S F R
Sbjct: 327 TLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKR 358
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 94 KIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFL 152
++FVGGL TE D +K F + G + ++ +M +P T++ +GF F+ +++ E+A +V
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 153 RSFHELNGKMVEV 165
+NGK V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+++ T + +L + FS YG V+++ I+ ++ +R +GFG+V F++ EE K
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAE---EEEARKA 89
Query: 67 KHKIDGKMVDVKKAAPKN 84
+ ++GK+ K K+
Sbjct: 90 QIGMNGKVRTYKPKVSKH 107
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
KIF+ G+++ T + +L + FS YG V+++ I+ ++ +R +GFG+V F++ EE K
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAE---EEEARKA 89
Query: 67 KHKIDGKMV 75
+ ++GK++
Sbjct: 90 QIGMNGKIL 98
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++GGI D L+++ G+V++ I K + RGF FV + +A + +K+
Sbjct: 351 EVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKE 410
Query: 67 KHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG-------TI 119
+ + K +K + + S ++F+G + + E D KK G I
Sbjct: 411 LNNTEFKAGKIKCSKSQAKS-------RLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELI 463
Query: 120 KDLVVMCDPNTQRPRGFGFITYDSEEAVD 148
KD+ N RG+ FI Y + + +
Sbjct: 464 KDM-----KNISNNRGYAFIDYHNNQCAE 487
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 6 CKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK 65
C++F+ + + T + L ++FS +G V ++ ++ D+ T+R++G ++ FS P A L+
Sbjct: 329 CRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALE 388
Query: 66 KKHK--IDGKMVDVKKAAPKNGS 86
+ G+++ V A P++ +
Sbjct: 389 ESDNSIFQGRLLHVMPAIPRHSN 411
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 19/177 (10%)
Query: 8 IFIGGISWDTNQRRLRQYFSAY---GKVMESVIIKDRTTR---RARGFGFVAFSDPAVAE 61
+F+ +++ T LR++FS + G+++ SV +K + GFGFV F A
Sbjct: 643 LFVKNLNFKTTDEVLREHFSEHMKEGRIL-SVKVKKHLKNGKNVSMGFGFVEFDSTETAT 701
Query: 62 EVLKKKH--KIDGKMVDVKKAAPKNGSPGPYR-------STKIFVGGLASTVTESDFKKY 112
V +DG + ++ KN + STK+ V +A TE D ++
Sbjct: 702 SVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFEATEKDLRQL 761
Query: 113 FDQFGTIKDLVVMCDPNTQRPRGFGFITY-DSEEAVDSVFLRSFHELNGKMVEVKRA 168
F FG IK L + RGF F+ Y +EA +++ S L G+ + ++RA
Sbjct: 762 FSPFGQIKSLRLPMKFGNH--RGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERA 816
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 95 IFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITY----DSEEAVDSV 150
++VGGLA V ES F FG IKD+ D TQ+ R FGF+T+ D+ A+D++
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 151 FLRSFHELNGKMVEVKRAVPKELSPGPN 178
EL G+++ V A+P+++ G
Sbjct: 72 ---DGAELYGRVLTVNYALPEKIKGGEQ 96
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 95 IFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRS 154
++V GL+S VT+ D + +F + G + ++ +P T+ RGF F+T DS E + ++
Sbjct: 64 LYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERC-IKH 122
Query: 155 FHE--LNGKMVEVKRAVPKEL-SPGPNH 179
++ L G+ + V+R+ K +P P H
Sbjct: 123 LNQSVLEGRYITVERSRRKRARTPTPGH 150
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
+IF+GG+ DT + L++ F G+V+E + K+ +T + RG+ V F++ A++ L
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 66 -KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVV 124
K I GK SP T +F+G + +T T+ K+ +G +
Sbjct: 479 MKNPVIRGKRCGT--------SPSEDNDT-LFLGNICNTWTKEAVKQKLKDYGVEGVENI 529
Query: 125 MCDPNTQRP---RGFGFITY 141
P+ Q RGF F+ +
Sbjct: 530 TLVPDVQHEGLSRGFAFLEF 549
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
K+FI G+S T +L + FS +G+++E+ +I DR + R++GF FV++S AE+ +
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 67 KHK--IDGKMVDVKKAAPKN 84
+ +DG ++ V A P+
Sbjct: 96 MNAKFLDGWVIFVDPAKPRE 115
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
+IF+GG+ DT + L++ F G+V+E + K+ +T + RG+ V F++ A++ L
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 66 -KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVV 124
K I GK SP T +F+G + +T T+ K+ +G +
Sbjct: 479 MKNPVIRGKRCGT--------SPSEDNDT-LFLGNICNTWTKEAVKQKLKDYGVEGVENI 529
Query: 125 MCDPNTQRP---RGFGFITY 141
P+ Q RGF F+ +
Sbjct: 530 TLVPDVQHEGLSRGFAFLEF 549
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLK- 65
+IF+GG+ DT + L++ F G+V+E + K+ +T + RG+ V F++ A++ L
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 66 -KKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIKDLVV 124
K I GK SP T +F+G + +T T+ K+ +G +
Sbjct: 479 MKNPVIRGKRCGT--------SPSEDNDT-LFLGNICNTWTKEAVKQKLKDYGVEGVENI 529
Query: 125 MCDPNTQRP---RGFGFITY 141
P+ Q RGF F+ +
Sbjct: 530 TLVPDVQHEGLSRGFAFLEF 549
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 95 IFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDS-EEAVDSVFLR 153
++V GL+S VTE D +++F + G + ++ +P T+ RGF F+T D+ E+A +
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 154 SFHELNGKMVEVKRAVPKE-LSPGPNH 179
+ L G+ + V+R+ K +P P H
Sbjct: 193 NQSILEGRYITVERSKRKRPRTPTPGH 219
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 5 NCK-IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSD---PAVA 60
C+ +++G + + L++ F+ G V + + + +GF+ + D A+A
Sbjct: 60 TCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALA 115
Query: 61 EEVLKKKHKIDGKMVDVKKA---APKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG 117
L +H + G+ + V A + + G Y IFVG L+ VT++ F +
Sbjct: 116 ILTLNGRH-LFGQPIKVNWAYASGQREDTSGHY---NIFVGDLSPEVTDATLFACFSVYQ 171
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMV 163
+ D VM D T R RGFGF+++ S++ S + ++L GK +
Sbjct: 172 SCSDARVMWDQKTGRSRGFGFVSFRSQQDAQS----AINDLTGKWL 213
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
IFI + + + L FS +G ++ I D + ++G+GFV F + A+ + K
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDK- 171
Query: 68 HKIDGKMVDVK--------KAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTI 119
++G +++ K + ++ + + ++V L+ +VT+ D K F ++GTI
Sbjct: 172 --LNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTI 229
Query: 120 KDLVVMCDPNTQRPRGFGFITY 141
VVM D + + + FGF+ +
Sbjct: 230 TSAVVMRDVDG-KSKCFGFVNF 250
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 28/171 (16%)
Query: 8 IFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKKK 67
+++G + D +L F+ G+V+ I +D ++++ G+G+V FS+P A
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDA------- 78
Query: 68 HKIDGKMVDVKKAAPKNGSPG----PYR--------STKIFVGGLASTVTESDFKKYFDQ 115
K +DV P N P +R + IF+ L + F
Sbjct: 79 ----AKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSI 134
Query: 116 FGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVK 166
FG I + D + +G+GF+ +++EE+ S + +LNG ++ K
Sbjct: 135 FGNILSCKIAMDASGLS-KGYGFVQFENEESAQS----AIDKLNGMLLNDK 180
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 3 ADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEE 62
++ C++F+ + + T + L ++FS +G V + ++ D+ T+R++G F+ FS P A
Sbjct: 896 SEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAAR 955
Query: 63 VLKKKHK--IDGKMVDVKKAAP 82
L++ G+++ V A P
Sbjct: 956 ALEESDNSIFQGRLLHVIAAIP 977
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 23/151 (15%)
Query: 7 KIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVAEEVLKK 66
++++GGI D L+++ G+V++ I+K + +GF FV + + +A + +++
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHKID--GKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFG------- 117
+ + G+ + + KN ++F+G + + E D KK G
Sbjct: 171 LNNTEFKGRKIKCSTSQAKN---------RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVE 221
Query: 118 TIKDLVVMCDPNTQRPRGFGFITYDSEEAVD 148
+KD+ N RGF FI Y + + +
Sbjct: 222 LVKDM-----KNISNNRGFAFIDYHNNQCAE 247
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 93 TKIFVGGLASTVTESDFKKYFDQFGTIKDLVVMCDPNTQRPRGFGFITYDSEEAVDSVFL 152
T+++V GL+ TE + F FG + D+ ++ D RPRGF F+ Y +EE +
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKA-I 153
Query: 153 RSFH--ELNGKMVEVKRAVPK-ELSPG 176
H L+G+++ V+ A P+ EL G
Sbjct: 154 EGMHGKFLDGRVIFVEVAKPRSELRQG 180