Miyakogusa Predicted Gene

Lj0g3v0000089.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0000089.2 tr|G7JDV1|G7JDV1_MEDTR RING finger protein
OS=Medicago truncatula GN=MTR_4g080750 PE=4
SV=1,68.75,0.00000000000008, ,CUFF.43.2
         (64 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g080750.1 | anaphase-promoting complex subunit 11 RING-H2 ...    81   2e-16

>Medtr4g080750.1 | anaphase-promoting complex subunit 11 RING-H2
          finger protein | HC | chr4:31202353-31200442 | 20130731
          Length = 276

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 48/64 (75%), Gaps = 4/64 (6%)

Query: 1  MSNFTPLPGRWRRGVRAYDA--HTTNN-SESNEVPVFYRSH-STRVNDERSSGVSDPLQW 56
          M+NFTPLPG  R   RAY A  HT+NN  E NEVPVFYRSH S+R NDERSSG  DPLQ 
Sbjct: 5  MNNFTPLPGLRRTDSRAYGAPHHTSNNPHEFNEVPVFYRSHHSSRANDERSSGAQDPLQL 64

Query: 57 WEVR 60
          WE+R
Sbjct: 65 WEIR 68