Miyakogusa Predicted Gene

Lj0g3v0000089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0000089.1 Non Characterized Hit- tr|E0CTW4|E0CTW4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.22,2e-19,SUBFAMILY NOT NAMED,NULL; RING FINGER PROTEIN
24-RELATED,NULL; no description,Zinc finger, RING/FYVE,CUFF.43.1
         (157 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g080750.1 | anaphase-promoting complex subunit 11 RING-H2 ...   160   4e-40

>Medtr4g080750.1 | anaphase-promoting complex subunit 11 RING-H2
           finger protein | HC | chr4:31202353-31200442 | 20130731
          Length = 276

 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/143 (63%), Positives = 106/143 (74%), Gaps = 14/143 (9%)

Query: 27  FPAQPHSRQQTNVPNGDIGR-GFNP-RLRQIFQQPHSRSTV--QTSTQAPRVEENTKSTA 82
           FP QPH RQQT   N D+ R G+NP R+R+IFQ   SRST   QT+T+ P+  EN+KST 
Sbjct: 80  FPLQPHRRQQTYNHNEDMRRRGYNPTRIREIFQHSPSRSTSTQQTNTRVPQSVENSKSTL 139

Query: 83  LSKLKKVIYNNNPTPKSLARRVSLYYRDNS-NALKKRVKEKDEDGKRC-------DPKEE 134
           LSKL+KV+Y+  PTPK LAR+VSLYYR N+ N LK+ VKEK EDG RC       + KEE
Sbjct: 140 LSKLRKVVYD--PTPKRLARKVSLYYRGNAANDLKESVKEKTEDGMRCAICLEDFEAKEE 197

Query: 135 VMLTPCNHMFHEDCIVPWLTSKG 157
           VMLTPCNHMFHEDCIV WLTSKG
Sbjct: 198 VMLTPCNHMFHEDCIVTWLTSKG 220