Miyakogusa Predicted Gene
- Lj6g3v2287350.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2287350.1 tr|A9PGS1|A9PGS1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1116974 PE=2
SV=1,77.73,0,RNA-BINDING PROTEIN RELATED,NULL; K homology RNA-binding
domain,K Homology domain; no description,NU,CUFF.61030.1
(257 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09660.1 | Symbols: | RNA-binding KH domain-containing prote... 310 8e-85
AT1G09660.2 | Symbols: | RNA-binding KH domain-containing prote... 285 2e-77
AT2G38610.2 | Symbols: | RNA-binding KH domain-containing prote... 236 8e-63
AT2G38610.1 | Symbols: | RNA-binding KH domain-containing prote... 236 8e-63
AT4G26480.1 | Symbols: | RNA-binding KH domain-containing prote... 233 1e-61
AT3G08620.1 | Symbols: | RNA-binding KH domain-containing prote... 233 1e-61
AT5G56140.1 | Symbols: | RNA-binding KH domain-containing prote... 221 4e-58
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 97 1e-20
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 97 1e-20
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 97 1e-20
>AT1G09660.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128032-3130791 REVERSE LENGTH=298
Length = 298
Score = 310 bits (793), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 159/258 (61%), Positives = 192/258 (74%), Gaps = 8/258 (3%)
Query: 1 MGERIPSGTYFQFXXXXXXXXXXXXXXXXXXXDRERYLAELLAERQKLGPFVQVLPQCTR 60
M ERI G++FQ+ DRERYL ELL ERQKLGPF+QV+P C R
Sbjct: 11 MEERISPGSFFQYPLSGFRASPNRSPCPPS--DRERYLTELLQERQKLGPFLQVMPNCCR 68
Query: 61 LITQEIRRITGFNQGFIEHDRPESDSPFRSLSQHPNSRPMDLEGWPAVPIEDNGNLQRIA 120
L+ EIRR++ F + DR E SPFRSL Q N + +DLEGW + E+N +LQR +
Sbjct: 69 LLNHEIRRVSSFP----DLDRYEHGSPFRSLGQPTNGK-LDLEGWSMMQAEENCHLQRAS 123
Query: 121 SFQAP-PMGWPGTQGVPTTPVVKRVIRLDVPVEKYPNYNFVGRILGPRGNSLKRVEAMTE 179
F+ P P+GW G G+P P+VK+VIRLDVPV+KYP+YNFVGRILGPRGNSLKRVE T
Sbjct: 124 PFRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATH 183
Query: 180 CRVYIRGCGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENL 239
CRV+IRG GSVKD++KEEKLK KPGYEHL EPLHVL+EAE PEDIINSRL+HAV LE+L
Sbjct: 184 CRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESL 243
Query: 240 LKPVDESLDHYKKQQLRE 257
LKP+DES+DHYK++QL+E
Sbjct: 244 LKPMDESMDHYKREQLKE 261
>AT1G09660.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128205-3130791 REVERSE LENGTH=264
Length = 264
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/247 (60%), Positives = 179/247 (72%), Gaps = 8/247 (3%)
Query: 1 MGERIPSGTYFQFXXXXXXXXXXXXXXXXXXXDRERYLAELLAERQKLGPFVQVLPQCTR 60
M ERI G++FQ+ DRERYL ELL ERQKLGPF+QV+P C R
Sbjct: 11 MEERISPGSFFQYPLSGFRASPNRSPCPPS--DRERYLTELLQERQKLGPFLQVMPNCCR 68
Query: 61 LITQEIRRITGFNQGFIEHDRPESDSPFRSLSQHPNSRPMDLEGWPAVPIEDNGNLQRIA 120
L+ EIRR++ F + DR E SPFRSL Q N + +DLEGW + E+N +LQR +
Sbjct: 69 LLNHEIRRVSSFP----DLDRYEHGSPFRSLGQPTNGK-LDLEGWSMMQAEENCHLQRAS 123
Query: 121 SFQAP-PMGWPGTQGVPTTPVVKRVIRLDVPVEKYPNYNFVGRILGPRGNSLKRVEAMTE 179
F+ P P+GW G G+P P+VK+VIRLDVPV+KYP+YNFVGRILGPRGNSLKRVE T
Sbjct: 124 PFRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATH 183
Query: 180 CRVYIRGCGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENL 239
CRV+IRG GSVKD++KEEKLK KPGYEHL EPLHVL+EAE PEDIINSRL+HAV LE+L
Sbjct: 184 CRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESL 243
Query: 240 LKPVDES 246
LKP+ S
Sbjct: 244 LKPMVHS 250
>AT2G38610.2 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 236 bits (603), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 123/229 (53%), Positives = 155/229 (67%), Gaps = 10/229 (4%)
Query: 33 DRERYLAELLAERQKLGPFVQVLPQCTRLITQEIRRITGF--NQGFIEHDR--PESDSPF 88
D +YL ELLAE QKL PF+QVLP C+RL+ QE+ R++G NQGF + DR S SP
Sbjct: 28 DSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPM 87
Query: 89 RSLSQHPNSRPMDLEGWPAVPIEDNGNLQRIASFQAPPMGWPGTQGVPTTPVVKRVIRLD 148
S + N L GW + E R++ M W G G P++ VKR++RL+
Sbjct: 88 ASSNLMSNVSNTGLGGWNGLSQE------RLSGTPGMTMDWQGAPGSPSSYTVKRILRLE 141
Query: 149 VPVEKYPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHL 208
+PV+ YPN+NFVGR+LGPRGNSLKRVEA T CRV+IRG GS+KD KE+KL+ +PGYEHL
Sbjct: 142 IPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHL 201
Query: 209 NEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 257
NE LH+L+EA+ P I+ RL A I+E LLKPVDES D K+QQLRE
Sbjct: 202 NEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRE 250
>AT2G38610.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 236 bits (603), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 123/229 (53%), Positives = 155/229 (67%), Gaps = 10/229 (4%)
Query: 33 DRERYLAELLAERQKLGPFVQVLPQCTRLITQEIRRITGF--NQGFIEHDR--PESDSPF 88
D +YL ELLAE QKL PF+QVLP C+RL+ QE+ R++G NQGF + DR S SP
Sbjct: 28 DSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPM 87
Query: 89 RSLSQHPNSRPMDLEGWPAVPIEDNGNLQRIASFQAPPMGWPGTQGVPTTPVVKRVIRLD 148
S + N L GW + E R++ M W G G P++ VKR++RL+
Sbjct: 88 ASSNLMSNVSNTGLGGWNGLSQE------RLSGTPGMTMDWQGAPGSPSSYTVKRILRLE 141
Query: 149 VPVEKYPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHL 208
+PV+ YPN+NFVGR+LGPRGNSLKRVEA T CRV+IRG GS+KD KE+KL+ +PGYEHL
Sbjct: 142 IPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHL 201
Query: 209 NEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 257
NE LH+L+EA+ P I+ RL A I+E LLKPVDES D K+QQLRE
Sbjct: 202 NEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRE 250
>AT4G26480.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:13372885-13375793 REVERSE LENGTH=308
Length = 308
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/226 (54%), Positives = 159/226 (70%), Gaps = 9/226 (3%)
Query: 33 DRERYLAELLAERQKLGPFVQVLPQCTRLITQEIRRITGFNQGFIEHDRPESDSPFRSLS 92
++E+YL+ELLAER KL PF+ VLP RL+ QEI R+T + + R + SP S
Sbjct: 57 EQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENALSQSRFDHPSPLASGG 116
Query: 93 QHPNSRPMDLEGWPA-VPIEDNGNLQRIASFQAPPMGWPGTQGVPTTPVVKRVIRLDVPV 151
NSR D+ GW + P E + ++S AP W + G + +VKR IR+D+PV
Sbjct: 117 IFQNSR-ADMNGWASQFPSE-----RSVSSSPAP--NWLNSPGSSSGLIVKRTIRVDIPV 168
Query: 152 EKYPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLNEP 211
+KYPNYNFVGR+LGPRGNSLKRVEA T+CRV IRG GS+KD IKE+ ++ KPGYEHLNEP
Sbjct: 169 DKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEP 228
Query: 212 LHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 257
LH+LVEAE P +I+++RL A IL++LL PV+E+ D YKKQQLRE
Sbjct: 229 LHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRE 274
>AT3G08620.1 | Symbols: | RNA-binding KH domain-containing protein
| chr3:2617925-2620314 FORWARD LENGTH=283
Length = 283
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/226 (57%), Positives = 158/226 (69%), Gaps = 10/226 (4%)
Query: 36 RYLAELLAERQKLGPFVQVLPQCTRLITQEIRRITGF--NQGFIEHDR--PESDSPFRSL 91
+Y+++LLAE QKLGPF+QVLP C+RL+ QEI RITG NQGF + DR S SP S
Sbjct: 30 QYISQLLAEHQKLGPFMQVLPICSRLLNQEIFRITGMMPNQGFTDFDRLRHRSPSPMASP 89
Query: 92 SQHPNSRPMDLEGWPAVPIEDNGNLQRIASFQAPPMGWPGTQGVPTTPVVKRVIRLDVPV 151
+ N L GW +P E RI M W G P++ VKR++RLD+PV
Sbjct: 90 NLMSNVSGGGLGGWNGLPPE------RIGGPHGMAMEWQGAPASPSSYPVKRILRLDLPV 143
Query: 152 EKYPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLNEP 211
+ YPN+NFVGR+LGPRGNSLKRVEA T CRVYIRG GS+KD KEEKLK KPGYEHLNE
Sbjct: 144 DTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQ 203
Query: 212 LHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 257
LH+L+EA+ P DI++ +L A I+E L+KPVDES D+ K+QQLRE
Sbjct: 204 LHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRE 249
>AT5G56140.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:22725462-22727932 FORWARD LENGTH=315
Length = 315
Score = 221 bits (562), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 154/228 (67%), Gaps = 11/228 (4%)
Query: 33 DRERYLAELLAERQKLGPFVQVLPQCTRLITQEIRRITGF--NQGFIEHDRPESDSPFRS 90
++E+YL+ELLAER KL PF+ VLP RL+ QEI R+T N + + SP S
Sbjct: 61 EQEKYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDHPSPLAS 120
Query: 91 LSQHPNSRPMDLEGWPA-VPIEDNGNLQRIASFQAPPMGWPGTQGVPTTPVVKRVIRLDV 149
N+R D+ GW + P E + + S P W + G + + KR IR+D+
Sbjct: 121 GGIFQNAR-ADMNGWASQFPSE-----RSVPSSPGP--NWLNSPGSSSGLIAKRTIRVDI 172
Query: 150 PVEKYPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLN 209
PV+ YPN+NFVGR+LGPRGNSLKRVEA T+CRV IRG GS+KD IKEE ++ KPGYEHLN
Sbjct: 173 PVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLN 232
Query: 210 EPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 257
EPLH+LVEAE P +I+++RL A IL++LL P++E+ D YKKQQLRE
Sbjct: 233 EPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRE 280
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 6/112 (5%)
Query: 146 RLDVPVEKYPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGY 205
+L +P++++P YNF+G I+GPRGN+ KR+E T ++ IRG GSVK+ ++K KD
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK-KDLKYD 302
Query: 206 EHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 257
NE LHVLVEAE E L+ A ++E LL+PVDE L+ +K+QQLRE
Sbjct: 303 PSENEDLHVLVEAETQE-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRE 349
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 6/112 (5%)
Query: 146 RLDVPVEKYPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGY 205
+L +P++++P YNF+G I+GPRGN+ KR+E T ++ IRG GSVK+ ++K KD
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK-KDLKYD 302
Query: 206 EHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 257
NE LHVLVEAE E L+ A ++E LL+PVDE L+ +K+QQLRE
Sbjct: 303 PSENEDLHVLVEAETQE-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRE 349
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 6/112 (5%)
Query: 146 RLDVPVEKYPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGY 205
+L +P++++P YNF+G I+GPRGN+ KR+E T ++ IRG GSVK+ ++K KD
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQK-KDLKYD 302
Query: 206 EHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE 257
NE LHVLVEAE E L+ A ++E LL+PVDE L+ +K+QQLRE
Sbjct: 303 PSENEDLHVLVEAETQE-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRE 349