Miyakogusa Predicted Gene
- Lj6g3v2275260.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2275260.1 Non Chatacterized Hit- tr|F6I2C5|F6I2C5_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,45.9,8e-19,
,CUFF.61025.1
(143 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09812.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 102 7e-23
AT1G58007.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 97 3e-21
AT1G58007.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 97 3e-21
AT1G11120.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 84 5e-17
AT1G11120.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 73 7e-14
AT4G28170.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 55 1e-08
>AT1G09812.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G58007.2); Has 93 Blast hits to 93 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:3187817-3188580 FORWARD
LENGTH=128
Length = 128
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 80/130 (61%), Gaps = 12/130 (9%)
Query: 9 SKAWNIYTASNPGPSQTGVDEEGPWNNFGTSMSAISLGFVATAILISMFLIMAIFEHLFK 68
S +W+IY+ P + D EGPW + TSM+AIS GFVATAILISMFLIMAIFEHLF+
Sbjct: 4 SSSWSIYS-----PREG--DSEGPWRS-STSMNAISFGFVATAILISMFLIMAIFEHLFR 55
Query: 69 PSQQF----SMLRRYQENSVVPTRKQGNAQPASSPYAASDFSVLMPGQQYPTYIAQPAPL 124
P +R+ Q + +K + D SV+MPG++ P++IA PAPL
Sbjct: 56 PENSSFDSPHQIRQRQRDGSSQFQKLADQASMVPVSTVVDVSVVMPGEKLPSHIALPAPL 115
Query: 125 PCPRERIYWP 134
PC RE I+WP
Sbjct: 116 PCRREGIHWP 125
>AT1G58007.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G09812.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr1:21446237-21447059 REVERSE LENGTH=115
Length = 115
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 72/133 (54%), Gaps = 22/133 (16%)
Query: 5 NSESSKAWNIYTASNPGPSQTGVDEEGPWNNFGTSMSAISLGFVATAILISMFLIMAIFE 64
S S + W+IY + G+SM+AIS GFVATAILI MF+IMAI E
Sbjct: 3 ESRSIRTWSIYRTKDTS---------------GSSMNAISFGFVATAILILMFIIMAILE 47
Query: 65 HLFKPSQQFSMLRRYQENSVVPTRKQGNAQPAS-SPYAASDFSVLMPGQQYPTYIAQPAP 123
HLF+ + ++ Q A+ AS P SD SV+MPG + P+Y+A PAP
Sbjct: 48 HLFRSDHS------SSYDVDDSSQFQKLAEKASMVPVTTSDVSVVMPGDKLPSYVALPAP 101
Query: 124 LPCPRERIYWPSH 136
PC RE I WPSH
Sbjct: 102 FPCRREGIRWPSH 114
>AT1G58007.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G09812.1); Has 91 Blast hits to 91 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:21446237-21447059 REVERSE
LENGTH=115
Length = 115
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 72/133 (54%), Gaps = 22/133 (16%)
Query: 5 NSESSKAWNIYTASNPGPSQTGVDEEGPWNNFGTSMSAISLGFVATAILISMFLIMAIFE 64
S S + W+IY + G+SM+AIS GFVATAILI MF+IMAI E
Sbjct: 3 ESRSIRTWSIYRTKDTS---------------GSSMNAISFGFVATAILILMFIIMAILE 47
Query: 65 HLFKPSQQFSMLRRYQENSVVPTRKQGNAQPAS-SPYAASDFSVLMPGQQYPTYIAQPAP 123
HLF+ + ++ Q A+ AS P SD SV+MPG + P+Y+A PAP
Sbjct: 48 HLFRSDHS------SSYDVDDSSQFQKLAEKASMVPVTTSDVSVVMPGDKLPSYVALPAP 101
Query: 124 LPCPRERIYWPSH 136
PC RE I WPSH
Sbjct: 102 FPCRREGIRWPSH 114
>AT1G11120.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 10 plant
structures; EXPRESSED DURING: 4 anthesis, F mature
embryo stage, petal differentiation and expansion stage,
E expanded cotyledon stage, D bilateral stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:3715229-3717320 FORWARD
LENGTH=161
Length = 161
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Query: 29 EEGPWNN-FGTSMSAISLGFVATAILISMFLIMAIFEHLFKPSQQFSMLRRYQENSVVP- 86
E PW + F S++A+S GFVATAILISMFL+MAIFE L + + + + V+P
Sbjct: 26 REEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTTNSDSSSSRVLPG 85
Query: 87 ----------TRKQGNAQPASSPYAASDFSVLMPGQQYPTYIAQPAPLPCPRERIYWPSH 136
K G P + Y ++ SVLMPG PT+IA PAP+PCP + I H
Sbjct: 86 MDSRVGFNGAATKLGYQSPKMTVY-SNGVSVLMPGDDIPTFIAHPAPVPCPPQNISQSQH 144
Query: 137 ER 138
+
Sbjct: 145 QH 146
>AT1G11120.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G09812.1); Has 270 Blast hits to 255 proteins
in 62 species: Archae - 0; Bacteria - 2; Metazoa - 93;
Fungi - 14; Plants - 126; Viruses - 0; Other Eukaryotes
- 35 (source: NCBI BLink). | chr1:3715229-3717320
FORWARD LENGTH=187
Length = 187
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 67/147 (45%), Gaps = 37/147 (25%)
Query: 29 EEGPWNN-FGTSMSAISLGFVATAILISMFLIMAIFEHLFKPSQQFSMLRRYQENSVVP- 86
E PW + F S++A+S GFVATAILISMFL+MAIFE L + + + + V+P
Sbjct: 26 REEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTTNSDSSSSRVLPG 85
Query: 87 ----------TRKQGNAQPASS-------------------------PYAASDFSVLMPG 111
K G P +S ++ SVLMPG
Sbjct: 86 MDSRVGFNGAATKLGYQSPKASNNRIVFSFSFNILKSELFIVIILRMTVYSNGVSVLMPG 145
Query: 112 QQYPTYIAQPAPLPCPRERIYWPSHER 138
PT+IA PAP+PCP + I H+
Sbjct: 146 DDIPTFIAHPAPVPCPPQNISQSQHQH 172
>AT4G28170.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G11120.2); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr4:13981635-13982575 FORWARD LENGTH=143
Length = 143
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 20/101 (19%)
Query: 28 DEEGPWNNFGTSMSAISLGFVATAILISMFLIMAIFEHLF--KPSQQFSMLRRYQENSVV 85
DEEG F +S++A+ G VAT +LI++FL++A FE KP+ + +++
Sbjct: 50 DEEG-QGRFESSVNAVPFGLVATGVLIAIFLLIAFFERFMFVKPTPSPPLDQKF------ 102
Query: 86 PTRKQGNAQPASSP---YAASDFSVLMPGQQYPTYIAQPAP 123
P +SP + SVLMPG+ PT+IAQP P
Sbjct: 103 --------PPFASPKMDVCKREISVLMPGEDVPTFIAQPCP 135