Miyakogusa Predicted Gene

Lj6g3v2275090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2275090.1 CUFF.61037.1
         (202 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58025.2 | Symbols:  | DNA-binding bromodomain-containing pro...    55   4e-08
AT1G58025.1 | Symbols:  | DNA-binding bromodomain-containing pro...    53   1e-07
AT1G58025.3 | Symbols:  | DNA-binding bromodomain-containing pro...    53   1e-07

>AT1G58025.2 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr1:21457755-21461757 REVERSE LENGTH=582
          Length = 582

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 144 KLLESLCVENPKLSSLCGILFPN--NSQSVWSGPHSLLHQ-----RNSACASSIRVLTFC 196
           K+ E   V NP+L SLC  LFPN  N  SVW+GPHSL  +     R+SA   ++ ++ F 
Sbjct: 515 KMQEKFQVRNPQLLSLCETLFPNDNNHNSVWNGPHSLFRRRGGSNRSSALHKAMNLVIFI 574

Query: 197 FY 198
            +
Sbjct: 575 LF 576


>AT1G58025.1 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr1:21458219-21461757 REVERSE LENGTH=572
          Length = 572

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 144 KLLESLCVENPKLSSLCGILFPN--NSQSVWSGPHSLLHQRNSACASS 189
           K+ E   V NP+L SLC  LFPN  N  SVW+GPHSL  +R  +  SS
Sbjct: 514 KMQEKFQVRNPQLLSLCETLFPNDNNHNSVWNGPHSLFRRRGGSNRSS 561


>AT1G58025.3 | Symbols:  | DNA-binding bromodomain-containing
           protein | chr1:21458219-21461757 REVERSE LENGTH=573
          Length = 573

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 144 KLLESLCVENPKLSSLCGILFPN--NSQSVWSGPHSLLHQRNSACASS 189
           K+ E   V NP+L SLC  LFPN  N  SVW+GPHSL  +R  +  SS
Sbjct: 515 KMQEKFQVRNPQLLSLCETLFPNDNNHNSVWNGPHSLFRRRGGSNRSS 562