Miyakogusa Predicted Gene

Lj6g3v2274980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274980.1 Non Chatacterized Hit- tr|Q2PEP5|Q2PEP5_TRIPR
Putative WD-40 repeat protein (Fragment) OS=Trifolium
,78.76,0,BOP1NT,BOP1, N-terminal domain; WD40,WD40 repeat;
WD_REPEATS_1,WD40 repeat, conserved site; RIBOSOME,CUFF.61011.1
         (722 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40360.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   915   0.0  
AT3G18140.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...    52   2e-06
AT3G18140.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    51   3e-06
AT1G64610.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...    49   8e-06
AT1G64610.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    49   8e-06

>AT2G40360.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr2:16853123-16856635 REVERSE LENGTH=753
          Length = 753

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/630 (69%), Positives = 521/630 (82%), Gaps = 17/630 (2%)

Query: 99  DESDSSEDEVAPRNTVGDVPLQWYEDEPHIGYDNTGKKIKKREKQDKLDSFLANIDDSKH 158
           +ESDSSEDEV  RNTVG+VPL+WYEDE HIGYD TGKKI K+EKQDKLDSFLA IDDSK 
Sbjct: 134 EESDSSEDEVPSRNTVGNVPLKWYEDEKHIGYDLTGKKITKKEKQDKLDSFLATIDDSKT 193

Query: 159 WQKIVDEYNDEVVELTKEEIKIVRRLLKSRAPHSDFDPNPDYVDWFKWDDANHPISNAPE 218
           W+KI DEYNDE VELTKEE KIV+R+LK  APH+DFDP   YV+WFK DDA HP+S+APE
Sbjct: 194 WRKIYDEYNDEDVELTKEESKIVQRILKGEAPHADFDPYAPYVEWFKHDDAIHPLSSAPE 253

Query: 219 PKRRFIPSKWEAKKVVQYVRAIRKGLITFDKPKEEDGPYLLWEDDSGLTEKANHLAYIPA 278
           PKRRFIPSKWEAKKVV+ VRAIRKG I FDKP+EE   YLLW DDS   +K+ HL YIP 
Sbjct: 254 PKRRFIPSKWEAKKVVKIVRAIRKGWIKFDKPEEEPNVYLLWGDDSTSDQKSKHLTYIPP 313

Query: 279 PKQKFPGHDESYNPPLEYIPTQEELNSYQLMPEDDRPKFIPKRFTSIRSIPAYENAMTEC 338
           PK K PGHDESYNP LEYIPT+EE  SY+LM E+DRPKFIP RFTS+RSIPAYENA+ E 
Sbjct: 314 PKLKLPGHDESYNPSLEYIPTEEEKASYELMFEEDRPKFIPTRFTSLRSIPAYENALKES 373

Query: 339 FERCMDLYLCPRVRKKRIQIDPEALKPKLPNRKELKPYPITCYIEYKGHEDAVTSISVES 398
           FERC+DLYLCPRVRKKRI IDPE+LKPKLP+RK+L+PYP +CY+EYKGH  AVTSIS +S
Sbjct: 374 FERCLDLYLCPRVRKKRINIDPESLKPKLPSRKDLRPYPNSCYLEYKGHTGAVTSISTDS 433

Query: 399 SGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNPLPDIHILAVSVGQDVLLLN 458
           SG+W+ASGS+DG+VR+WEVETGRCL+ W+  EA+ CVAWNPL  + +LAV++G+D+  LN
Sbjct: 434 SGEWIASGSTDGSVRMWEVETGRCLKVWQFDEAIMCVAWNPLSRLPVLAVAMGRDLFFLN 493

Query: 459 TCVGDEEEQKRINELLWV------DSSIASHDSGKQSPSVSWLRDDKHAGIRLKHIKTVT 512
           T +G +EEQ+   E L        D+S+A+         V+WL D+ + GI+++H K+++
Sbjct: 494 TELGTDEEQEITKERLHSGNIPEPDASVAA--------IVTWLPDELYGGIKIRHFKSIS 545

Query: 513 SVEWHRRGDYFSTVMPAGESRSVLIHQLSKKVTQKLPFKLSELVVGSTFHPSLSIFFVCT 572
           S++WHR+GDY STVM +GE+R V++HQLSK+ TQ+LPFK+  L V + FHPSLS FFV T
Sbjct: 546 SIDWHRKGDYLSTVMASGETRGVVLHQLSKQKTQRLPFKIRGLPVCTLFHPSLSYFFVAT 605

Query: 573 KRIVRVYDLVK-SKRLKKLYTGLSEASSIAVHPGGDNLIVGSKEGKMCWFDMDLSSKPYK 631
           ++ VRVY+L+K  +  KKL TGL E SS+A+HPGGDNLIVGSKEGKMCWFDMDLSSKPYK
Sbjct: 606 RKDVRVYNLLKPGEATKKLETGLREISSMAIHPGGDNLIVGSKEGKMCWFDMDLSSKPYK 665

Query: 632 TLKCHPKDINNVVFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTNSN 691
           TLK HPKDI NV  HRSYPLFASCS+D TAYVFHGMVY+DLNQNPLIVPLEILRGH++  
Sbjct: 666 TLKNHPKDITNVAVHRSYPLFASCSEDSTAYVFHGMVYNDLNQNPLIVPLEILRGHSSKG 725

Query: 692 GRGILDCKFHPRQPWLFTAGADKLIKVYCH 721
             G+LDCKFHPRQPWLFTAGAD +IK+YCH
Sbjct: 726 --GVLDCKFHPRQPWLFTAGADSIIKLYCH 753


>AT3G18140.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:6213225-6214567 REVERSE LENGTH=224
          Length = 224

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 341 RCMDLYLCPRVRKKRIQIDPE------ALKP--KLPNRKELKPYPITCYIEYKGHEDAVT 392
           RC      P     R++I P+      A  P  +L +     P P+   + Y  H + V 
Sbjct: 26  RCYRTIQYPDSHVNRLEITPDKHYLAAACNPHIRLFDVNSNSPQPV---MTYDSHTNNVM 82

Query: 393 SISVESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNP 439
           ++  +   +WM SGS DGTV++W++    C + +E   AVN V  +P
Sbjct: 83  AVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYESVAAVNTVVLHP 129


>AT3G18140.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:6212743-6214567 REVERSE LENGTH=305
          Length = 305

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 341 RCMDLYLCPRVRKKRIQIDPE------ALKP--KLPNRKELKPYPITCYIEYKGHEDAVT 392
           RC      P     R++I P+      A  P  +L +     P P+   + Y  H + V 
Sbjct: 26  RCYRTIQYPDSHVNRLEITPDKHYLAAACNPHIRLFDVNSNSPQPV---MTYDSHTNNVM 82

Query: 393 SISVESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNP 439
           ++  +   +WM SGS DGTV++W++    C + +E   AVN V  +P
Sbjct: 83  AVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYESVAAVNTVVLHP 129


>AT1G64610.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:23998920-24001297 REVERSE LENGTH=647
          Length = 647

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 383 EYKGHEDAVTSISVESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNPLPD 442
           E+KGH   +  +S    G ++ S S D TVR+W V    CLR +     V CVA+NP+ D
Sbjct: 317 EFKGHIGEILDLSWSEKG-YLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDD 375

Query: 443 IHILAVSVGQDV 454
            + ++ S+   V
Sbjct: 376 NYFISGSIDGKV 387


>AT1G64610.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:23998920-24001297 REVERSE LENGTH=647
          Length = 647

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 383 EYKGHEDAVTSISVESSGQWMASGSSDGTVRVWEVETGRCLRRWEVGEAVNCVAWNPLPD 442
           E+KGH   +  +S    G ++ S S D TVR+W V    CLR +     V CVA+NP+ D
Sbjct: 317 EFKGHIGEILDLSWSEKG-YLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDD 375

Query: 443 IHILAVSVGQDV 454
            + ++ S+   V
Sbjct: 376 NYFISGSIDGKV 387