Miyakogusa Predicted Gene
- Lj6g3v2274960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2274960.1 CUFF.61006.1
(330 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G06676.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Etoposide-... 374 e-104
AT4G06676.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 326 1e-89
>AT4G06676.1 | Symbols: | CONTAINS InterPro DOMAIN/s:
Etoposide-induced 2.4 (InterPro:IPR009890); Has 264
Blast hits to 262 proteins in 100 species: Archae - 0;
Bacteria - 0; Metazoa - 130; Fungi - 16; Plants - 79;
Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
| chr4:3898998-3901589 FORWARD LENGTH=320
Length = 320
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/319 (58%), Positives = 227/319 (71%), Gaps = 4/319 (1%)
Query: 6 QAKAACFLWLEGFREACCLHRVLILCLRSRRLLVRTGQCFLLNGFIFLGSIFVLSSVVIP 65
++K LWLEGFREAC LHRV+ILCLRSR+LL+RTGQCFLLNG IFLGS+ V + P
Sbjct: 4 KSKQVLLLWLEGFREACSLHRVVILCLRSRKLLLRTGQCFLLNGLIFLGSLGVFKWFIDP 63
Query: 66 ALWWILPDQCSQFVSHKLCDSDGTLKFYYFLRLLLIQLFYVLWFYPLYVFSIILSTIWYN 125
+L WILPDQCS S + C G FY FLR L+QLFYV WFYPLY+ S ILS IWYN
Sbjct: 64 SLQWILPDQCSPLTSQEFCSYGG---FYAFLRGGLLQLFYVFWFYPLYMLSFILSNIWYN 120
Query: 126 DIAKYGYAAMGRSNFTEKKGSSQNSPTIQ-NAHHAKKPSGLGGVMIGIGEQVXXXXXXXX 184
DIAK+G+ A+ S+ + Q N +A++PSGLGGVMIGIGEQV
Sbjct: 121 DIAKHGFEAIEISDLNSAEALRQGEALASLNMANAERPSGLGGVMIGIGEQVYSILLLTF 180
Query: 185 XXXXXXATGFIPYIGKVLNFLLLSWMYAYYCFEYKWNFNEVALDRRLDYFESFWPFFAGF 244
G IPYIGK+LNFLLLSWMYAYYC+EYKWNF+ ++L +RLD+F+S W FFAGF
Sbjct: 181 FFLEVCVVGVIPYIGKILNFLLLSWMYAYYCYEYKWNFSGISLKKRLDFFQSNWAFFAGF 240
Query: 245 GSPCVLAIFFFSPLVSYGIMAILFPLFVLTATGSEAEQQISLDKTKWRAAGVERLPIFYV 304
GSPCVLAIFF SPLVS +MAILFPLFVLTATGS E+ I + W+ AG+ +LPIFY+
Sbjct: 241 GSPCVLAIFFLSPLVSGALMAILFPLFVLTATGSGPEKLIGAPRRTWKCAGLGKLPIFYI 300
Query: 305 ANNVSLWMLSLLPLEKRDQ 323
A+ +S+ LS+ LE +
Sbjct: 301 ADTLSMLALSIFRLESPHE 319
>AT4G06676.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; CONTAINS
InterPro DOMAIN/s: Etoposide-induced 2.4
(InterPro:IPR009890); Has 261 Blast hits to 259 proteins
in 97 species: Archae - 0; Bacteria - 0; Metazoa - 130;
Fungi - 16; Plants - 81; Viruses - 0; Other Eukaryotes -
34 (source: NCBI BLink). | chr4:3898998-3901170 FORWARD
LENGTH=272
Length = 272
Score = 326 bits (835), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/272 (60%), Positives = 195/272 (71%), Gaps = 4/272 (1%)
Query: 6 QAKAACFLWLEGFREACCLHRVLILCLRSRRLLVRTGQCFLLNGFIFLGSIFVLSSVVIP 65
++K LWLEGFREAC LHRV+ILCLRSR+LL+RTGQCFLLNG IFLGS+ V + P
Sbjct: 4 KSKQVLLLWLEGFREACSLHRVVILCLRSRKLLLRTGQCFLLNGLIFLGSLGVFKWFIDP 63
Query: 66 ALWWILPDQCSQFVSHKLCDSDGTLKFYYFLRLLLIQLFYVLWFYPLYVFSIILSTIWYN 125
+L WILPDQCS S + C G FY FLR L+QLFYV WFYPLY+ S ILS IWYN
Sbjct: 64 SLQWILPDQCSPLTSQEFCSYGG---FYAFLRGGLLQLFYVFWFYPLYMLSFILSNIWYN 120
Query: 126 DIAKYGYAAMGRSNFTEKKGSSQNSPTIQ-NAHHAKKPSGLGGVMIGIGEQVXXXXXXXX 184
DIAK+G+ A+ S+ + Q N +A++PSGLGGVMIGIGEQV
Sbjct: 121 DIAKHGFEAIEISDLNSAEALRQGEALASLNMANAERPSGLGGVMIGIGEQVYSILLLTF 180
Query: 185 XXXXXXATGFIPYIGKVLNFLLLSWMYAYYCFEYKWNFNEVALDRRLDYFESFWPFFAGF 244
G IPYIGK+LNFLLLSWMYAYYC+EYKWNF+ ++L +RLD+F+S W FFAGF
Sbjct: 181 FFLEVCVVGVIPYIGKILNFLLLSWMYAYYCYEYKWNFSGISLKKRLDFFQSNWAFFAGF 240
Query: 245 GSPCVLAIFFFSPLVSYGIMAILFPLFVLTAT 276
GSPCVLAIFF SPLVS +MAILFPL V + +
Sbjct: 241 GSPCVLAIFFLSPLVSGALMAILFPLNVCSLS 272