Miyakogusa Predicted Gene

Lj6g3v2274940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274940.1 Non Chatacterized Hit- tr|F6GYS5|F6GYS5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,39.26,0.000002,FAMILY NOT NAMED,NULL; TCP,Transcription factor,
TCP; TCP,Transcription factor TCP subgroup; seg,NUL,CUFF.61004.1
         (491 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58100.1 | Symbols:  | TCP family transcription factor  | chr...   249   4e-66
AT1G35560.1 | Symbols:  | TCP family transcription factor  | chr...   192   5e-49
AT1G58100.2 | Symbols:  | TCP family transcription factor  | chr...   186   2e-47
AT1G72010.1 | Symbols:  | TCP family transcription factor  | chr...   160   3e-39
AT3G47620.1 | Symbols: AtTCP14, TCP14 | TEOSINTE BRANCHED, cyclo...   147   2e-35
AT1G69690.1 | Symbols:  | TCP family transcription factor  | chr...   145   8e-35
AT5G23280.1 | Symbols:  | TCP family transcription factor  | chr...   134   2e-31
AT2G45680.1 | Symbols:  | TCP family transcription factor  | chr...   133   2e-31
AT5G08330.1 | Symbols:  | TCP family transcription factor  | chr...   129   6e-30
AT3G27010.1 | Symbols: AT-TCP20, PCF1, TCP20, ATTCP20 | TEOSINTE...   125   5e-29
AT5G51910.2 | Symbols:  | TCP family transcription factor  | chr...   125   7e-29
AT5G51910.1 | Symbols:  | TCP family transcription factor  | chr...   125   7e-29
AT2G37000.1 | Symbols:  | TCP family transcription factor  | chr...   107   2e-23
AT5G41030.1 | Symbols:  | TCP family transcription factor  | chr...   105   8e-23
AT3G45150.1 | Symbols: TCP16 | TCP domain protein 16 | chr3:1653...    91   3e-18

>AT1G58100.1 | Symbols:  | TCP family transcription factor  |
           chr1:21512680-21513885 REVERSE LENGTH=401
          Length = 401

 Score =  249 bits (635), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 178/375 (47%), Positives = 201/375 (53%), Gaps = 65/375 (17%)

Query: 87  QLIDASLAIATRSDPPTHQLXXXXXXXXXXXXXXXXXKRSTKDRHTKVDGRGRRIRMPAT 146
           QL+DASL+I  RS PP                     KRSTKDRHTKVDGRGRRIRMPA 
Sbjct: 24  QLVDASLSIVPRSTPPEDS----TLATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPAL 79

Query: 147 CAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLS 206
           CAARVFQLTRELGHKSDGETIEWLLQQAEPAI+AATGTGTIPANFSTL+VSLRSSGSTLS
Sbjct: 80  CAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSTLSVSLRSSGSTLS 139

Query: 207 APPSKSAPHTFHGAALGLAHQSYEE-----AFQQHT-PMLGFHHHRQQLMSADQIS---E 257
           APPSKS P   +G ALGL H  Y+E      F  HT P+LGFHH  Q   + +Q     E
Sbjct: 140 APPSKSVP--LYG-ALGLTHHQYDEQGGGGVFAAHTSPLLGFHHQLQHHQNQNQNQDPVE 196

Query: 258 ALPGDSSENYMRKRYRE-DLFKDDANNQSSQQNETGDGPSSPKQFKPDXXXXXXXXXXXX 316
            +P    EN+ RKRYR  DL K+   N   +QNE        K  K              
Sbjct: 197 TIP--EGENFSRKRYRSVDLSKE---NDDRKQNEN-------KSLKESETSGPTAAPMWA 244

Query: 317 LLRPSNLLXXXXXXXXXXXXXXTVGGSTIWMLPV--TAGGAVNSASDNQHT-------MW 367
           +  PS                 +  G+T WMLPV  TAG  + S+S+N          MW
Sbjct: 245 VAPPSR----------------SGAGNTFWMLPVPTTAGNQMESSSNNNTAAGHRAPPMW 288

Query: 368 PFXXXXXXXXXXXXXXXLHFMQRFNLPTGGVGVEFXXXXXXXX---XXXXMYQP-PSQHL 423
           PF                HFM        G G  F               + QP P+Q+L
Sbjct: 289 PFVNSAGGGAGGGGGAATHFM-------AGTGFSFPMDQYRGSPLQLGSFLAQPQPTQNL 341

Query: 424 GLAMSDSNLGMLAAL 438
           GL+M DSNLGMLAAL
Sbjct: 342 GLSMPDSNLGMLAAL 356


>AT1G35560.1 | Symbols:  | TCP family transcription factor  |
           chr1:13116099-13117124 REVERSE LENGTH=341
          Length = 341

 Score =  192 bits (487), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/247 (50%), Positives = 139/247 (56%), Gaps = 35/247 (14%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           KR +KDRH KVDGRGRRIRMPA CAARVFQLTREL HKSDGETIEWLLQQAEPAIIAATG
Sbjct: 52  KRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATG 111

Query: 184 TGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGAALGLAHQSYEEAFQQHTPMLGFH 243
           TGTIPAN STLN+SLRSSGSTLSAP SKS    FH   +G A         Q+  + GF 
Sbjct: 112 TGTIPANISTLNISLRSSGSTLSAPLSKS----FH---MGRA--------AQNAAVFGF- 155

Query: 244 HHRQQLMSADQISEALPGDSSENYMRKRYR-EDLFKDDANNQSSQQNETGDGPSSPKQFK 302
             +QQL     I+     DSS + + K +R EDLFKD     +    E G     P    
Sbjct: 156 --QQQLYHPHHITT----DSSSSSLPKTFREEDLFKDP----NFLDQEPGSRSPKPGSEA 205

Query: 303 PDXXXXXXXXXXXXLLRPSNLLXXXXXXXXXXXXXXTVGGSTIWMLPVTAGGAVNSASDN 362
           PD            ++ P   L              T GGS  WMLPV  GG   +  D 
Sbjct: 206 PDQDPGSTRSRTQNMIPPMWAL--------APTPASTNGGSAFWMLPVGGGGGPANVQDP 257

Query: 363 QHTMWPF 369
              MW F
Sbjct: 258 SQHMWAF 264


>AT1G58100.2 | Symbols:  | TCP family transcription factor  |
           chr1:21512680-21513885 REVERSE LENGTH=377
          Length = 377

 Score =  186 bits (473), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 177/375 (47%), Gaps = 89/375 (23%)

Query: 87  QLIDASLAIATRSDPPTHQLXXXXXXXXXXXXXXXXXKRSTKDRHTKVDGRGRRIRMPAT 146
           QL+DASL+I  RS PP                     KRSTKDRHTKVDGRGRRIRMPA 
Sbjct: 24  QLVDASLSIVPRSTPPEDS----TLATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPAL 79

Query: 147 CAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLS 206
           CAARVFQLTREL                        GTGTIPANFSTL+VSLRSSGSTLS
Sbjct: 80  CAARVFQLTREL------------------------GTGTIPANFSTLSVSLRSSGSTLS 115

Query: 207 APPSKSAPHTFHGAALGLAHQSYEE-----AFQQHT-PMLGFHHHRQQLMSADQIS---E 257
           APPSKS P   +G ALGL H  Y+E      F  HT P+LGFHH  Q   + +Q     E
Sbjct: 116 APPSKSVP--LYG-ALGLTHHQYDEQGGGGVFAAHTSPLLGFHHQLQHHQNQNQNQDPVE 172

Query: 258 ALPGDSSENYMRKRYRE-DLFKDDANNQSSQQNETGDGPSSPKQFKPDXXXXXXXXXXXX 316
            +P    EN+ RKRYR  DL K+   N   +QNE        K  K              
Sbjct: 173 TIP--EGENFSRKRYRSVDLSKE---NDDRKQNEN-------KSLKESETSGPTAAPMWA 220

Query: 317 LLRPSNLLXXXXXXXXXXXXXXTVGGSTIWMLPV--TAGGAVNSASDNQHT-------MW 367
           +  PS                 +  G+T WMLPV  TAG  + S+S+N          MW
Sbjct: 221 VAPPSR----------------SGAGNTFWMLPVPTTAGNQMESSSNNNTAAGHRAPPMW 264

Query: 368 PFXXXXXXXXXXXXXXXLHFMQRFNLPTGGVGVEFXXXXXXXX---XXXXMYQP-PSQHL 423
           PF                HFM        G G  F               + QP P+Q+L
Sbjct: 265 PFVNSAGGGAGGGGGAATHFM-------AGTGFSFPMDQYRGSPLQLGSFLAQPQPTQNL 317

Query: 424 GLAMSDSNLGMLAAL 438
           GL+M DSNLGMLAAL
Sbjct: 318 GLSMPDSNLGMLAAL 332


>AT1G72010.1 | Symbols:  | TCP family transcription factor  |
           chr1:27107844-27108971 FORWARD LENGTH=375
          Length = 375

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/265 (42%), Positives = 138/265 (52%), Gaps = 46/265 (17%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           K+ TKDRHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPAIIA+TG
Sbjct: 60  KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTG 119

Query: 184 TGTIPANFSTLNVSLRS-SGSTLSAPPSKSAPHTFHGAALGLAHQSYEE----------- 231
           TGTIPANFSTLN SLRS  GSTL +  SKS+       + G++   YE+           
Sbjct: 120 TGTIPANFSTLNASLRSGGGSTLFSQASKSSSSPLSFHSTGMSL--YEDNNGTNGSSVDP 177

Query: 232 -----AFQQHTPMLGFHHHRQ-QLMSADQISEALPGDSSENYMRKRYREDLFKDDANNQS 285
                    +  + GFHH     +MS ++         + N + K YRED FK+ ++   
Sbjct: 178 SRKLLNSAANAAVFGFHHQMYPPIMSTER---------NPNTLVKPYREDYFKEPSSAAE 228

Query: 286 SQQNETGDGPSSPKQFKPDXXXXXXXXXXXXLLRPSNLLXXXXXXXXXXXXXXTVGGSTI 345
             ++          QF+              L +                   T GGS  
Sbjct: 229 PSESS-----QKASQFQ-----------EQELAQGRGTANVVPQPMWAVAPGTTNGGSAF 272

Query: 346 WMLPVT-AGGAVNSASDNQHTMWPF 369
           WMLP++ +GG         H MW F
Sbjct: 273 WMLPMSGSGGREQMQQQPGHQMWAF 297


>AT3G47620.1 | Symbols: AtTCP14, TCP14 | TEOSINTE BRANCHED,
           cycloidea and PCF (TCP) 14 | chr3:17559004-17560473
           FORWARD LENGTH=489
          Length = 489

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 108/185 (58%), Gaps = 38/185 (20%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           + STKDRHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEP++IAATG
Sbjct: 114 RASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATG 173

Query: 184 TGTIPANFSTLNVS-------------LRSSGSTLSAPPSKSAPHTF-------HGAALG 223
           TGTIPANF++LN+S              RS+ ST S P +  +P           G  +G
Sbjct: 174 TGTIPANFTSLNISLRSSGSSMSLPSHFRSAASTFS-PNNIFSPAMLQQQQQQQRGGGVG 232

Query: 224 LAHQSYE------------EAFQQHTPMLGFHHHRQQLMSADQISEALPGDSSENYMRKR 271
             H   +            + F   T  L FH+  +Q    DQ SE L   +SE   R +
Sbjct: 233 FHHPHLQGRAPTSSLFPGIDNFTPTTSFLNFHNPTKQ--EGDQDSEEL---NSEKKRRIQ 287

Query: 272 YREDL 276
              DL
Sbjct: 288 TTSDL 292


>AT1G69690.1 | Symbols:  | TCP family transcription factor  |
           chr1:26216449-26217426 FORWARD LENGTH=325
          Length = 325

 Score =  145 bits (365), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 71/73 (97%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           + STKDRHTKV+GRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPA+IAATG
Sbjct: 49  RTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATG 108

Query: 184 TGTIPANFSTLNV 196
           TGTIPANF++LN+
Sbjct: 109 TGTIPANFTSLNI 121


>AT5G23280.1 | Symbols:  | TCP family transcription factor  |
           chr5:7843017-7843769 FORWARD LENGTH=250
          Length = 250

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 73/83 (87%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           K   KDRH+KVDGRGRRIRMP  CAARVFQLTRELGHKSDG+TIEWLL+QAEP+IIAATG
Sbjct: 36  KPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG 95

Query: 184 TGTIPANFSTLNVSLRSSGSTLS 206
           TGT PA+FST +VS+R + ++ S
Sbjct: 96  TGTTPASFSTASVSIRGATNSTS 118


>AT2G45680.1 | Symbols:  | TCP family transcription factor  |
           chr2:18820717-18821787 REVERSE LENGTH=356
          Length = 356

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 71/81 (87%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           + STKDRHTKV+GRGRRIRMPATCAAR+FQLTRELGHKSDGETI WLL+ AEPAIIAATG
Sbjct: 72  RASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATG 131

Query: 184 TGTIPANFSTLNVSLRSSGST 204
           TGT+PA   ++N +L+   +T
Sbjct: 132 TGTVPAIAMSVNGTLKIPTTT 152


>AT5G08330.1 | Symbols:  | TCP family transcription factor  |
           chr5:2680828-2681547 FORWARD LENGTH=239
          Length = 239

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 69/77 (89%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           K  +KDRH+KVDGRGRRIRMP  CAARVFQLTRELGHKSDG+TIEWLL+QAEP+IIAATG
Sbjct: 28  KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG 87

Query: 184 TGTIPANFSTLNVSLRS 200
           TGT PA+FST ++S  S
Sbjct: 88  TGTTPASFSTASLSTSS 104


>AT3G27010.1 | Symbols: AT-TCP20, PCF1, TCP20, ATTCP20 | TEOSINTE
           BRANCHED 1, cycloidea, PCF (TCP)-domain family protein
           20 | chr3:9957810-9958754 REVERSE LENGTH=314
          Length = 314

 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/65 (86%), Positives = 62/65 (95%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           + S KDRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI+WLLQQAEP+IIAATG
Sbjct: 75  RSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATG 134

Query: 184 TGTIP 188
           +GTIP
Sbjct: 135 SGTIP 139


>AT5G51910.2 | Symbols:  | TCP family transcription factor  |
           chr5:21094704-21095585 REVERSE LENGTH=293
          Length = 293

 Score =  125 bits (314), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 67/74 (90%)

Query: 126 STKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTG 185
           ++KDRHTKV+GRGRRIRMPA CAARVFQLTRELGHKSDGETI WLL++AEPAII ATGTG
Sbjct: 56  TSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTG 115

Query: 186 TIPANFSTLNVSLR 199
           T+PA   ++N +L+
Sbjct: 116 TVPAIAVSVNGTLK 129


>AT5G51910.1 | Symbols:  | TCP family transcription factor  |
           chr5:21094704-21095585 REVERSE LENGTH=293
          Length = 293

 Score =  125 bits (314), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 67/74 (90%)

Query: 126 STKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTG 185
           ++KDRHTKV+GRGRRIRMPA CAARVFQLTRELGHKSDGETI WLL++AEPAII ATGTG
Sbjct: 56  TSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTG 115

Query: 186 TIPANFSTLNVSLR 199
           T+PA   ++N +L+
Sbjct: 116 TVPAIAVSVNGTLK 129


>AT2G37000.1 | Symbols:  | TCP family transcription factor  |
           chr2:15540390-15540956 FORWARD LENGTH=188
          Length = 188

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 127 TKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGT 186
           TKDRHTKV+GR RR+ MPA  AAR+FQLTRELGHK++GETIEWLL QAEP+IIAATG GT
Sbjct: 43  TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYGT 102


>AT5G41030.1 | Symbols:  | TCP family transcription factor  |
           chr5:16428706-16429437 FORWARD LENGTH=243
          Length = 243

 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 55/65 (84%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           K+  KDRH KV+GRGRR+R+P  CAAR++QLT+ELGHKSDGET+EWLLQ AEP+I++AT 
Sbjct: 65  KKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSILSATV 124

Query: 184 TGTIP 188
            G  P
Sbjct: 125 NGIKP 129


>AT3G45150.1 | Symbols: TCP16 | TCP domain protein 16 |
           chr3:16531179-16531676 FORWARD LENGTH=165
          Length = 165

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 50/62 (80%)

Query: 124 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 183
           +R+ KDRH K+ GR RRIR+P + A ++F+LT+ELG K+DGET+ WLLQ AEPAI AATG
Sbjct: 14  RRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAIFAATG 73

Query: 184 TG 185
            G
Sbjct: 74  HG 75