Miyakogusa Predicted Gene
- Lj6g3v2274700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2274700.1 tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase
Q1 OS=Medicago truncatula GN=MTR_2g006440 PE=4
SV=,81.76,0,DEAD,DNA/RNA helicase, DEAD/DEAH box type, N-terminal;
Helicase_C,Helicase, C-terminal; RQC,RQC doma,gene.g67741.t1.1
(907 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (... 762 0.0
AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase... 712 0.0
AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2... 327 3e-89
AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-... 321 1e-87
AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 | chr1:1... 263 3e-70
AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 261 2e-69
AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 182 7e-46
AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 174 3e-43
AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM | chr5:979424... 134 2e-31
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 65 3e-10
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 64 5e-10
>AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase
(RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188
Length = 1188
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/539 (67%), Positives = 425/539 (78%), Gaps = 10/539 (1%)
Query: 74 IVEQYQSSCTPQPSMSRLPPITPTADKDNFAGHDNL-LPPELCVDCSHGCKLGHCPEAAS 132
++E Y S+ TPQPS+S TP D+ + LPPELC +CSHG KLG CPEA++
Sbjct: 226 VMEHYHSTSTPQPSVSNFSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEAST 285
Query: 133 HLQELKDNLIVISNELLDNVENLSSTDISKLHQDRSQLKKQIQQLEKYIHSSNLAEERQK 192
H++++KD L+ ISNELLD+ +LS + +L Q+R +LKKQIQQLE +I +E QK
Sbjct: 286 HVEQMKDVLLAISNELLDDATDLSPDRVGQLRQERLRLKKQIQQLENHIRD----KESQK 341
Query: 193 SHFSASTAPPTSFVYETPRQPFLSSGPKTYDSQAYMGN-GTYGXXXXXX---XXXXXDRY 248
S F +STA F YETP+ D +A++ + G Y DRY
Sbjct: 342 SQFLSSTATRI-FQYETPKSTNYKMDQPQTDFRAHVSDQGRYACDSWNTPRDSSFSVDRY 400
Query: 249 GMPSGPVEREAFIPKNIEVNYIEGSGDKRWSSQDFPWTKDLEVNNKRVFGNHSFRPNQRE 308
G+ S PVERE ++PK I+V Y EGS DK+WSS++FPWT+ LEVNNK+VFGNHSFRPNQRE
Sbjct: 401 GLSSAPVEREQYVPKIIDVTYTEGSNDKKWSSREFPWTRKLEVNNKKVFGNHSFRPNQRE 460
Query: 309 VINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPA 368
+INATMSG DVFVLMPTGGGKSLTYQLPALIC GITLVISPLVSLIQDQIM+LLQANIPA
Sbjct: 461 IINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQDQIMNLLQANIPA 520
Query: 369 VCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVI 428
LSA +EW+EQ +I +ELNS++ KYKLLYVTPEKVA+SD LLR LENL+ R LL+R VI
Sbjct: 521 ASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVI 580
Query: 429 DEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFR 488
DEAHCVSQWGHDFRPDYQ LGILKQKFPN PV SVKEDVVQALGL+NC++FR
Sbjct: 581 DEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR 640
Query: 489 QSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKC 548
QSFNRPNLWYSVVPKTKKC+EDIDKFI+ENHFDECGIIYCLSRMDCEKV+E+LQE GHK
Sbjct: 641 QSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKA 700
Query: 549 TYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 607
+YHG+M+P QRAF+Q QWSKDE+NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ
Sbjct: 701 AFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 759
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/275 (50%), Positives = 172/275 (62%), Gaps = 28/275 (10%)
Query: 608 VELIKLTGQRFSSSHILEVYRGSLSQLVKKHRHETVRLHGAGKPLAKGEASRVLHRLVVE 667
VEL+K TG+RFSS+HILEVYRGSL+Q+VKKHRHET++ HGAGK L+K E SR+LH LV E
Sbjct: 877 VELVKQTGERFSSAHILEVYRGSLNQMVKKHRHETLQFHGAGKHLSKIEVSRILHYLVTE 936
Query: 668 DIILEEVKKSDIYGSVSSVLKVNEHKVRNLLSGGQRIVLRFPSPVKASKHGKCDLTPAKG 727
DI++E+V+KSD+YGSVSS+L+VN K L SG Q IV++FPS VK K K T AKG
Sbjct: 937 DILVEDVRKSDMYGSVSSLLQVNNAKATILFSGSQTIVMKFPSSVKVLKPSKQGATAAKG 996
Query: 728 PLTSGKLNPPVIDMTDQPQTEVDLNLSAKLYSALRMLRTTLVREAADGVMAYHIF----- 782
PLTS K + + D P D+NLSA +Y+ALR LRT LV+EA DGVMAYHIF
Sbjct: 997 PLTSEKQSTLPLTTEDAPPK--DVNLSANMYTALRKLRTALVKEAPDGVMAYHIFINSTL 1054
Query: 783 ---------------------GTKVSKYGDRLLETIEDTINEYYKLXXXXXXXXXXXXXX 821
KVSKYGD+LLETIE T+NEYY
Sbjct: 1055 QQISRRIPRTKEELLEINGLGKAKVSKYGDQLLETIETTVNEYYGTNKKDSIISNDSPDS 1114
Query: 822 KRRREAASGDASANAEDDFTKSTGRSKKMTVKRQT 856
+RR + + +DDF S +S K TV+ ++
Sbjct: 1115 GKRRRDENISPNVAEDDDFEVSPSQSCKKTVRNKS 1149
>AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase
L4B | chr1:22431093-22438302 REVERSE LENGTH=1150
Length = 1150
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/537 (65%), Positives = 408/537 (75%), Gaps = 14/537 (2%)
Query: 75 VEQYQSSCTPQPSMSRLPPITPTADKDNFAGHDNLLPPELCVDCSHGCKLGHCPEAASHL 134
+E S+CT QPS+S+ I T+ ++ G LPPE+C +CSHG KLG CPEA++H+
Sbjct: 249 MEHCPSTCTKQPSVSKFVDIF-TSRREEEQG----LPPEICSNCSHGIKLGLCPEASTHV 303
Query: 135 QELKDNLIVISNELLDNVENLSSTDISKLHQDRSQLKKQIQQLEKYIHSSNLAEERQKSH 194
+++KD L+ ISNE+LDN +L + +LHQ R LKKQIQQLE IH+ +ER+KS
Sbjct: 304 EQMKDTLLAISNEILDNTYDLGPDHVEQLHQKRLLLKKQIQQLEILIHN----KERKKSQ 359
Query: 195 FSASTAPPTSFVYETPRQPFLSSGPKTYDSQAYMGNG----TYGXXXXXXXXXXXDRYGM 250
S P + YETP+ L DS ++ T +RY +
Sbjct: 360 CLVSI-PSHNTQYETPQTTNLEVVYGQTDSPTHVKEQGRCVTDNWNMPRDYLVSKERYDI 418
Query: 251 PSGPVEREAFIPKNIEVNYIEGSGDKRWSSQDFPWTKDLEVNNKRVFGNHSFRPNQREVI 310
SG ERE + + I+V E S DK+W+S DFPWTK+LEV NK VFGNHSFRPNQRE+I
Sbjct: 419 SSGSEEREQSVSEVIDVTDTESSNDKKWTSSDFPWTKNLEVYNKLVFGNHSFRPNQREII 478
Query: 311 NATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAVC 370
NATMSGCDVFVLMPTGGGKSLTYQLPAL+C GITLVISPLVSLIQDQIM+LLQ NI A
Sbjct: 479 NATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVISPLVSLIQDQIMNLLQTNISAAS 538
Query: 371 LSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDE 430
LSA +EW+EQ EIL+EL+S+ KYKLLYVTPEKVA+S+ LLR LE L+ R LL+R VIDE
Sbjct: 539 LSAGMEWAEQLEILQELSSEKSKYKLLYVTPEKVAKSESLLRHLEILNSRSLLARFVIDE 598
Query: 431 AHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQS 490
AHCVSQWGHDFRPDYQGLG+LKQKFPN P+ SVKEDVVQALGL+NC++FRQS
Sbjct: 599 AHCVSQWGHDFRPDYQGLGVLKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQS 658
Query: 491 FNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCTY 550
FNRPNLWYSVVPKT KC+EDIDKFIRENHFDECGIIYCLSRMDCEKV E L+ GHK +
Sbjct: 659 FNRPNLWYSVVPKTNKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAF 718
Query: 551 YHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 607
YHG+MDP +RAFVQKQWSKDE+NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ
Sbjct: 719 YHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 775
Score = 216 bits (550), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 131/274 (47%), Positives = 165/274 (60%), Gaps = 43/274 (15%)
Query: 608 VELIKLTGQRFSSSHILEVYRGSLSQLVKKHRHETVRLHGAGKPLAKGEASRVLHRLVVE 667
V L+KLTG+RFSS+HI+E+YRGSL+Q VK++R +T+ LHGAGK L K EASR+LH LV E
Sbjct: 893 VALVKLTGERFSSAHIVEIYRGSLNQSVKRNRQDTLHLHGAGKHLTKSEASRILHYLVTE 952
Query: 668 DIILEEVKKSDIYGSVSSVLKVNEHKVRNLLSGGQRIVLRFPSPVKASKHGKCDLTPAKG 727
DI+ E VKKS++YGSVSS+LKVN K +LLSGGQ I +RFPS +K SK K PAK
Sbjct: 953 DILAEGVKKSELYGSVSSLLKVNRSKAASLLSGGQSITMRFPSTIKVSKQSKSTANPAKV 1012
Query: 728 PLTSGKLNPPVIDMTDQPQTEVDLNLSAKLYSALRMLRTTLVREAADGVMAYHIFG---- 783
PL L P+ Q D NLS L +AL+ LRT +V+E+ D VMAYHIFG
Sbjct: 1013 PLKQTTL--PMAKAAPQ-----DSNLSGILLTALKNLRTDIVKESPDLVMAYHIFGNATL 1065
Query: 784 ----------------------TKVSKYGDRLLETIEDTINEYYKLXXXXXXXXXXXXXX 821
KVSKYGDRLLETI+ TIN++YK
Sbjct: 1066 KEISKRLPRTKEELLDINGLGKAKVSKYGDRLLETIDSTINDHYK---------TRPGSG 1116
Query: 822 KRRREAASGDASANAEDDFTKSTGRSKKMTVKRQ 855
KRRR+ + + + +DD S +S K VK +
Sbjct: 1117 KRRRD-ENVNPNVAEDDDPDWSASQSHKKVVKNK 1149
>AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 |
chr1:11232422-11237412 FORWARD LENGTH=705
Length = 705
Score = 327 bits (838), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 217/339 (64%), Gaps = 5/339 (1%)
Query: 273 SGDKRWSSQDFPWTKDLEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLT 332
S + WS + F W + VFG +R NQ+E+INA M+G DV V+M GGGKSL
Sbjct: 62 SAIENWS-ETFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLC 120
Query: 333 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYC 392
YQLPA++ G TLV+SPL+SLIQDQ+M L I A L++ ++ + + L
Sbjct: 121 YQLPAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGED 180
Query: 393 KYKLLYVTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILK 452
K+LYVTPEKV++S + +LE H LS I IDEAHC SQWGHDFRPDY+ L ILK
Sbjct: 181 DLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILK 240
Query: 453 QKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKT---KKCVE 509
+FP P+ V+ D+++ L + C+ F S NRPNL+YSV K+ K V+
Sbjct: 241 TQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVD 300
Query: 510 DIDKFIRENHF-DECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWS 568
+I +FIRE++ +E GI+YC SR +CE++A L+E G YYH +MD R V +WS
Sbjct: 301 EIAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWS 360
Query: 569 KDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 607
K+++ +I TVAFGMGINKPDVRFVIHHSL KS+E Y+Q
Sbjct: 361 KNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQ 399
>AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 |
chr3:1698180-1701228 FORWARD LENGTH=606
Length = 606
Score = 321 bits (823), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/331 (49%), Positives = 216/331 (65%), Gaps = 2/331 (0%)
Query: 279 SSQDFPWTKDLEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPAL 338
S ++ DLE N +FGN FRP Q + A+M D FVLMPTGGGKSL YQLPA
Sbjct: 184 SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPAT 243
Query: 339 ICPGITLVISPLVSLIQDQIMHL-LQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLL 397
+ G+T+VISPL+SLIQDQI+ L L+ IPA L++ S+ +L+EL D KLL
Sbjct: 244 LKAGVTIVISPLLSLIQDQIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLL 303
Query: 398 YVTPEKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 457
YVTPEK+A S L L L + LL+ V+DEAHCVSQWGHDFRPDY+ LG LKQ FP
Sbjct: 304 YVTPEKIAGSSSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPR 363
Query: 458 TPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRE 517
PV SV +DV+++L + + + SF+R NL Y V+ KTK+ ++ + + +R+
Sbjct: 364 VPVMALTATATESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRD 423
Query: 518 NHFDECGIIYCLSRMDCEKVAEKLQE-CGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIIC 576
D+ GI+YCLS+ +C VA+ L E C K YYH + QR VQ++W EV I+C
Sbjct: 424 RFKDQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVC 483
Query: 577 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 607
AT+AFGMGI+K DVRFVIH++L K++E Y+Q
Sbjct: 484 ATIAFGMGIDKADVRFVIHNTLSKAVESYYQ 514
>AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 |
chr1:11233174-11237412 FORWARD LENGTH=580
Length = 580
Score = 263 bits (673), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 131/270 (48%), Positives = 175/270 (64%), Gaps = 4/270 (1%)
Query: 342 GITLVISPLVSLIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTP 401
G TLV+SPL+SLIQDQ+M L I A L++ ++ + + L K+LYVTP
Sbjct: 5 GTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTP 64
Query: 402 EKVARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVX 461
EKV++S + +LE H LS I IDEAHC SQWGHDFRPDY+ L ILK +FP P+
Sbjct: 65 EKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMV 124
Query: 462 XXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKT---KKCVEDIDKFIREN 518
V+ D+++ L + C+ F S NRPNL+YSV K+ K V++I +FIRE+
Sbjct: 125 ALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRES 184
Query: 519 HF-DECGIIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICA 577
+ +E GI+YC SR +CE++A L+E G YYH +MD R V +WSK+++ +I
Sbjct: 185 YSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVG 244
Query: 578 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 607
TVAFGMGINKPDVRFVIHHSL KS+E Y+Q
Sbjct: 245 TVAFGMGINKPDVRFVIHHSLSKSMETYYQ 274
>AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936233-16940172 FORWARD
LENGTH=713
Length = 713
Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 186/313 (59%), Gaps = 4/313 (1%)
Query: 297 FGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 356
FG+ FR Q E I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 32 FGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLIALMEN 91
Query: 357 QIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLEN 416
Q+M L + I A LS+ + +I +L+S +LLYVTPE +A +L+ L
Sbjct: 92 QVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLK-LRK 150
Query: 417 LHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 476
LH R LL+ I IDEAHC+S WGHDFRP Y+ L L+ + PV V++DV+
Sbjct: 151 LHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVI 210
Query: 477 QALGLINCIIFRQSFNRPNLWYSVVPK--TKKCVEDIDKFIRENHFDECGIIYCLSRMDC 534
+L L N ++ + SFNRPN++Y V K D+ ++ + + C IIYCL R C
Sbjct: 211 DSLNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLK-SCGNICAIIYCLERTTC 269
Query: 535 EKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVI 594
+ ++ L G YH ++ R+ V W + II ATVAFGMGI+K DVR V
Sbjct: 270 DDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVC 329
Query: 595 HHSLPKSIEGYHQ 607
H ++PKS+E ++Q
Sbjct: 330 HFNIPKSMESFYQ 342
>AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936788-16940172 FORWARD
LENGTH=620
Length = 620
Score = 182 bits (463), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 139/251 (55%), Gaps = 4/251 (1%)
Query: 359 MHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLENLH 418
M L + I A LS+ + +I +L+S +LLYVTPE +A +L+ L LH
Sbjct: 1 MALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLK-LRKLH 59
Query: 419 VRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQA 478
R LL+ I IDEAHC+S WGHDFRP Y+ L L+ + PV V++DV+ +
Sbjct: 60 SRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDS 119
Query: 479 LGLINCIIFRQSFNRPNLWYSVVPK--TKKCVEDIDKFIRENHFDECGIIYCLSRMDCEK 536
L L N ++ + SFNRPN++Y V K D+ ++ + + C IIYCL R C+
Sbjct: 120 LNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLK-SCGNICAIIYCLERTTCDD 178
Query: 537 VAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHH 596
++ L G YH ++ R+ V W + II ATVAFGMGI+K DVR V H
Sbjct: 179 LSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHF 238
Query: 597 SLPKSIEGYHQ 607
++PKS+E ++Q
Sbjct: 239 NIPKSMESFYQ 249
>AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:9708940-9713901 FORWARD LENGTH=911
Length = 911
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 11/316 (3%)
Query: 296 VFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 355
V+G SFR Q + I + G +++PTG GKSL YQ+PA+I PGITLV+SPLVSL+
Sbjct: 264 VYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVSLMI 323
Query: 356 DQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRQLE 415
DQ+ H L + I LS++ E E LR+L K+L+V+PE++ + L
Sbjct: 324 DQLKH-LPSIIKGGLLSSSQRPEEATETLRKLKEGII--KVLFVSPERLLNVEFLSMFRM 380
Query: 416 NLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGL--GILKQKFPNTPVXXXXXXXXXSVKE 473
+L V S +V+DEAHCVS+W H+FRP Y L +L + + +
Sbjct: 381 SLSV----SLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQ 436
Query: 474 DVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECG--IIYCLSR 531
V+ +L + + + ++S R N SV ++D+ + + E I+YC +
Sbjct: 437 AVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQ 496
Query: 532 MDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVR 591
+ + +++ L++ YH + R +Q+ + +++ ++ ATVAFGMG++K DV
Sbjct: 497 YETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVG 556
Query: 592 FVIHHSLPKSIEGYHQ 607
VIH S+P S+E Y Q
Sbjct: 557 AVIHFSVPGSMEEYVQ 572
>AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM |
chr5:9794244-9798637 REVERSE LENGTH=858
Length = 858
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 20/227 (8%)
Query: 285 WTKDLEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGIT 344
W K + + FG S R QRE ++ ++ D VL TG GKSL +Q+PAL+ +
Sbjct: 152 WEKRVNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVV 211
Query: 345 LVISPLVSLIQDQIMHLLQANIPAVCL-SANIEWSEQQEILRELNSDYCKYKLLYVTPEK 403
+VISPL+SL+ DQ + L + + A L S ++ +++ ++ + Y+++YV PE
Sbjct: 212 VVISPLISLMHDQCLKLSRHKVSACFLGSGQLDNCIEEKAMQGM------YQIIYVCPET 265
Query: 404 VARSDVLLRQLENLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP------- 456
V R L++ L+ L ++ IDEAHCVS+WGHDFRP Y+ L +L++ F
Sbjct: 266 VVR---LIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFL 322
Query: 457 --NTPVXXXXXXXXXSVKEDVVQALGLIN-CIIFRQSFNRPNLWYSV 500
+ P+ +V+ED++++L L I SF RPNL +SV
Sbjct: 323 EYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSV 369
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 525 IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQWSKDEVNIICATVAFGMG 584
IIY +R + +A+ L G K Y+ ++ V + + +++ ++ AT+AFGMG
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 585 INKPDVRFVIHHSLPKSIEGYHQ 607
I+K +VR +IH+ +S+E Y+Q
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQ 583
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 20/165 (12%)
Query: 507 CVEDIDKFIR-ENHFDECG----IIYCLSRMDCEKVAEKLQECGHKCTYYHGNMDPAQRA 561
+++ +KF R + DE G I++ ++ +C+ +A+ L + G++ T HG QR
Sbjct: 557 MMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQRE 616
Query: 562 FVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGY-HQVELIKLTGQ---- 616
+ + N++ AT G GI+ PDV VI++ +PK IE Y H++ G+
Sbjct: 617 ISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVA 676
Query: 617 -RFSSSHILEVYRGSLSQLVKKHRHETVRLHGAGKP-LAKGEASR 659
F + H EV+ L Q++ V+ + A P LA+ EASR
Sbjct: 677 TSFLTLHDTEVFY-DLKQML-------VQSNSAVPPELARHEASR 713
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 142/349 (40%), Gaps = 71/349 (20%)
Query: 304 PNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALI------------CPGITLVISPL- 350
P Q + M G D+ + TG GK+L+Y LPA++ P I LV++P
Sbjct: 124 PIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGP-IVLVLAPTR 182
Query: 351 ---VSLIQDQIMHLLQANIPAVCLSANIEWSEQQEILRELNSDYCKYKLLYVTPEKVARS 407
V + Q+ + I C+ + Q +R+L +++ TP ++
Sbjct: 183 ELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQ---VRDLQKGV---EIVIATPGRL--- 233
Query: 408 DVLLRQLENLHVRELLSRIVIDEAHCVSQWGHD---------FRPDYQGLGI-------- 450
+ + + N ++R + + +V+DEA + G D RPD Q L
Sbjct: 234 -IDMMESNNTNLRRV-TYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEV 291
Query: 451 --LKQKFPNTPVXXXXXXXXXSVKEDVVQALGLINCIIFRQSFNRPNLWYSVVPKTKKCV 508
L +KF P + Q +++ I Q +N K K +
Sbjct: 292 EQLSKKFLYNPYKVIIGSSDLKANRAIRQ---IVDVISESQKYN----------KLVKLL 338
Query: 509 EDIDKFIRENHFDECGIIYCL-SRMDCEKVAEKLQECGHKCTYYHGNMDPAQRAFVQKQW 567
EDI D I+ L ++ C+++ +L+ G HG+ A+R +V ++
Sbjct: 339 EDI--------MDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 390
Query: 568 SKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQVELIKLTGQ 616
+ I+ AT G++ DV++VI++ P S+E Y V I TG+
Sbjct: 391 RSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDY--VHRIGRTGR 437