Miyakogusa Predicted Gene

Lj6g3v2274630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274630.1 tr|G7LIM7|G7LIM7_MEDTR Pheophorbide a oxygenase
OS=Medicago truncatula GN=MTR_8g085840 PE=4 SV=1,81.95,0,no
description,Rieske [2Fe-2S] iron-sulphur domain; PHEOPHORBIDE A
OXYGENASE,NULL; IRON-SULFUR DOMAI,CUFF.61043.1
         (271 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | ...   364   e-101
AT4G25650.1 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | ...   358   2e-99
AT3G44880.1 | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygenas...   181   7e-46
AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envelo...   122   3e-28
AT1G44446.2 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenas...    59   4e-09
AT1G44446.3 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenas...    59   4e-09
AT1G44446.1 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenas...    59   5e-09

>AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like |
           chr4:13081021-13083153 REVERSE LENGTH=559
          Length = 559

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/273 (64%), Positives = 215/273 (78%), Gaps = 9/273 (3%)

Query: 1   MEAAVA-FSVRSLHIPTPLESSTPLRKSMFLSTQLNPPLSLVHGITSKSKLFTALSPTQL 59
           MEAA+A  ++ SL I     ++ P  +  F +  L  P+S    IT KS  FT    +  
Sbjct: 1   MEAALAACALPSLRI----LNTKPRFRCSFSNPSL--PISPNSLITRKSSRFTTAVSSPP 54

Query: 60  TEESSSNNLPEDEPEV--EANSEKFDWYSQWYPLMPICDLDKRAPHAKKVLGIDVVVWWD 117
           +  ++++     EPE   E  S+KFDWY+ WYP+MPICDLDK+ PH KKV+GID+VVWWD
Sbjct: 55  SSSAATSTNSPPEPEALFEPGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWD 114

Query: 118 RNEGAWQVFDDACPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPEGPPVH 177
           RNE  W+V DD CPHRLAPLS+GRIDQWGRLQCVYHGWCFNGSGDCK IPQAPP+GPPVH
Sbjct: 115 RNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVH 174

Query: 178 TFKKACVAAYPSTVQNDILWFWPNTDPQYKDIIERKRPPYIPELDDPSYTRLMGNRDITY 237
           TFK+ACVA YPSTVQ++I+WFWPN+DP+YK+IIE  +PPYIPEL+DPS+T+LMGNRDI Y
Sbjct: 175 TFKQACVAVYPSTVQHEIIWFWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPY 234

Query: 238 GYEVLIENLMDPSHVPYAHYGLMRTQQPKGRHI 270
           GY+VL+ENLMDP+HVPYAHYGLMR  +PKG++I
Sbjct: 235 GYDVLVENLMDPAHVPYAHYGLMRFPKPKGKYI 267


>AT4G25650.1 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like |
           chr4:13081021-13083153 REVERSE LENGTH=536
          Length = 536

 Score =  358 bits (918), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 173/271 (63%), Positives = 212/271 (78%), Gaps = 9/271 (3%)

Query: 1   MEAAVA-FSVRSLHIPTPLESSTPLRKSMFLSTQLNPPLSLVHGITSKSKLFTALSPTQL 59
           MEAA+A  ++ SL I     ++ P  +  F +  L  P+S    IT KS  FT    +  
Sbjct: 1   MEAALAACALPSLRI----LNTKPRFRCSFSNPSL--PISPNSLITRKSSRFTTAVSSPP 54

Query: 60  TEESSSNNLPEDEPEV--EANSEKFDWYSQWYPLMPICDLDKRAPHAKKVLGIDVVVWWD 117
           +  ++++     EPE   E  S+KFDWY+ WYP+MPICDLDK+ PH KKV+GID+VVWWD
Sbjct: 55  SSSAATSTNSPPEPEALFEPGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWD 114

Query: 118 RNEGAWQVFDDACPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPEGPPVH 177
           RNE  W+V DD CPHRLAPLS+GRIDQWGRLQCVYHGWCFNGSGDCK IPQAPP+GPPVH
Sbjct: 115 RNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVH 174

Query: 178 TFKKACVAAYPSTVQNDILWFWPNTDPQYKDIIERKRPPYIPELDDPSYTRLMGNRDITY 237
           TFK+ACVA YPSTVQ++I+WFWPN+DP+YK+IIE  +PPYIPEL+DPS+T+LMGNRDI Y
Sbjct: 175 TFKQACVAVYPSTVQHEIIWFWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPY 234

Query: 238 GYEVLIENLMDPSHVPYAHYGLMRTQQPKGR 268
           GY+VL+ENLMDP+HVPYAHYGLMR  +PK +
Sbjct: 235 GYDVLVENLMDPAHVPYAHYGLMRFPKPKEK 265


>AT3G44880.1 | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr3:16383858-16386204 FORWARD LENGTH=537
          Length = 537

 Score =  181 bits (458), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 136/245 (55%), Gaps = 13/245 (5%)

Query: 25  RKSMFLSTQLNPPLSLVHGITSKSKLF-----TALSPTQLTEESSSNNLPEDE--PEVEA 77
           +K  FLS     PL  V    S+SKLF      A  P+  T +S+     E+E   + E 
Sbjct: 19  KKIPFLSPTTKFPLK-VSISPSRSKLFHNPLRVAAPPSVPTSDSTEEKRIEEEYGGDKEE 77

Query: 78  NSEKFDWYSQWYPLMPICDLDKRAPHAKKVLGIDVVVWWDRNEGAWQVFDDACPHRLAPL 137
              +F W   WYP+  + DLD   P   ++LG D+V+W+DRN+  W  FDD CPHRLAPL
Sbjct: 78  EGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPL 137

Query: 138 SEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPEGPPVHTFK--KACVAAYPSTVQNDI 195
           SEGR+D+ G LQC YHGW F G G C  IPQA   GP     K  +AC   +P+ V   +
Sbjct: 138 SEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGL 197

Query: 196 LWFWPNTDPQYKDIIERKRPPYIP-ELDDPSYTRLMGNRDITYGYEVLIENLMDPSHVPY 254
           L+ WP  D    D      PP +P + D P ++ +   RD+ YGY+ L+EN+ DPSH+ +
Sbjct: 198 LFVWP--DENGWDRANSIEPPRLPDDFDKPEFSTVTIQRDLFYGYDTLMENVSDPSHIDF 255

Query: 255 AHYGL 259
           AH+ +
Sbjct: 256 AHHKV 260


>AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envelope
           membrane of chloroplasts 55-II | chr2:10575038-10576829
           FORWARD LENGTH=539
          Length = 539

 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 11/188 (5%)

Query: 69  PEDEPEVEANSEKFDWYSQWYPLMPICDLDKRAPHAKKVLGIDVVVWWDRNEGAWQVFDD 128
           PE+E  VE     +DW  +WYPL    ++ + AP    V    +V++ D  EG  + ++D
Sbjct: 71  PEEEKRVEV--ADYDWTEEWYPLYLTKNVPEDAPLGLTVYDRQIVLYKD-GEGTLRCYED 127

Query: 129 ACPHRLAPLSEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPEGPPVHTFKKACVAAYP 188
            CPHRLA LSEG++   GRL+C+YHGW F G G C  IPQ P         K ACV  Y 
Sbjct: 128 RCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPASA---KIPKAACVKTYE 183

Query: 189 STVQNDILWFWPNTDPQYKDIIERKRPPYIPELDDPSYTRLMGNRDITYGYEVLIENLMD 248
                 ++W W +T    K     ++ P+      P +  +    ++ Y + +L+ENLMD
Sbjct: 184 VKDSQGVVWVWMST----KTPPNPEKLPWFENFARPGFFDISTTHELPYDHSILLENLMD 239

Query: 249 PSHVPYAH 256
           P+HVP +H
Sbjct: 240 PAHVPISH 247


>AT1G44446.2 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr1:16848822-16851152 REVERSE LENGTH=511
          Length = 511

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 45/183 (24%)

Query: 88  WYPLMPICDLDKRAPHAKKVLGIDVVVWWDRNEGAWQVFD----------DACPHRLAPL 137
           WYP+    DL             D +V  +  E  W +F           + C HR  PL
Sbjct: 221 WYPVAFTADLKH-----------DTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPL 269

Query: 138 SEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPEGPPVHTFKKACVAAYPSTVQNDILW 197
             G +++ GR+QC YHGW ++  G+CK +P             K  + + P   Q  ++W
Sbjct: 270 DLGTVNE-GRIQCPYHGWEYSTDGECKKMPST--------KLLKVKIKSLPCLEQEGMIW 320

Query: 198 FWPNTDPQYKDIIERKRPPYIPELDDPS----YTRLMGNRDITYGYEVLIENLMDPSHVP 253
            WP  +P           P +P L  PS    +  L+ +  + +G  +     +  +H P
Sbjct: 321 IWPGDEPP---------APILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDL--AHAP 369

Query: 254 YAH 256
           + H
Sbjct: 370 FTH 372


>AT1G44446.3 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr1:16849132-16851152 REVERSE LENGTH=433
          Length = 433

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 45/183 (24%)

Query: 88  WYPLMPICDLDKRAPHAKKVLGIDVVVWWDRNEGAWQVFD----------DACPHRLAPL 137
           WYP+    DL             D +V  +  E  W +F           + C HR  PL
Sbjct: 221 WYPVAFTADLKH-----------DTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPL 269

Query: 138 SEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPEGPPVHTFKKACVAAYPSTVQNDILW 197
             G +++ GR+QC YHGW ++  G+CK +P             K  + + P   Q  ++W
Sbjct: 270 DLGTVNE-GRIQCPYHGWEYSTDGECKKMPST--------KLLKVKIKSLPCLEQEGMIW 320

Query: 198 FWPNTDPQYKDIIERKRPPYIPELDDPS----YTRLMGNRDITYGYEVLIENLMDPSHVP 253
            WP  +P           P +P L  PS    +  L+ +  + +G  +     +  +H P
Sbjct: 321 IWPGDEPP---------APILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDL--AHAP 369

Query: 254 YAH 256
           + H
Sbjct: 370 FTH 372


>AT1G44446.1 | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase
           family protein with Rieske [2Fe-2S] domain |
           chr1:16848664-16851152 REVERSE LENGTH=536
          Length = 536

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 45/183 (24%)

Query: 88  WYPLMPICDLDKRAPHAKKVLGIDVVVWWDRNEGAWQVFD----------DACPHRLAPL 137
           WYP+    DL             D +V  +  E  W +F           + C HR  PL
Sbjct: 221 WYPVAFTADLKH-----------DTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPL 269

Query: 138 SEGRIDQWGRLQCVYHGWCFNGSGDCKFIPQAPPEGPPVHTFKKACVAAYPSTVQNDILW 197
             G +++ GR+QC YHGW ++  G+CK +P             K  + + P   Q  ++W
Sbjct: 270 DLGTVNE-GRIQCPYHGWEYSTDGECKKMPST--------KLLKVKIKSLPCLEQEGMIW 320

Query: 198 FWPNTDPQYKDIIERKRPPYIPELDDPS----YTRLMGNRDITYGYEVLIENLMDPSHVP 253
            WP  +P           P +P L  PS    +  L+ +  + +G  +     +  +H P
Sbjct: 321 IWPGDEPP---------APILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDL--AHAP 369

Query: 254 YAH 256
           + H
Sbjct: 370 FTH 372