Miyakogusa Predicted Gene

Lj6g3v2274510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274510.1 CUFF.60981.1
         (155 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22030.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein BY...    98   3e-21
AT1G77855.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    84   5e-17

>AT1G22030.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein
           BYPASS related (InterPro:IPR008511); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in
           17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
           - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:7759337-7760415 REVERSE
           LENGTH=333
          Length = 333

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 85/167 (50%), Gaps = 17/167 (10%)

Query: 6   NGFSGFRGVLHAMRSVGSXXXXXXXXXXAYCWSSSCFHQGDMVFGS------GFMVSMAM 59
           NGFSGFRGVL+A R++ S           YC+      Q             GF  +M  
Sbjct: 167 NGFSGFRGVLYATRNMSSLLLMVLMNGLVYCFPGDAATQTQTQITQTQSQVGGFAGAMGR 226

Query: 60  LQQKVTXXXXXXXXXXXXLLFEFQQAKIAMEELKVELERMAGYEAHGDDIQEKVE----- 114
           LQQ+V             L+ E++++K A+EELK ELER       G   +E+ E     
Sbjct: 227 LQQRVAAEVGRMGIRKGILMHEYRRSKAALEELKAELERRFCGGGGGGGEREEEEEDERE 286

Query: 115 ------NVKSCFGLLRCGVETITGQLDDFFDEIVEGRKKLLDMCSHR 155
                 N+K  FG LR G E+I  Q+DDFFDEIVEGRKKLLD CSHR
Sbjct: 287 LRERVENLKGYFGNLRNGTESIVAQIDDFFDEIVEGRKKLLDFCSHR 333


>AT1G77855.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G22030.1); Has 120 Blast hits to 120 proteins
           in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:29277244-29278388 REVERSE
           LENGTH=317
          Length = 317

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 14/155 (9%)

Query: 6   NGFSGFRGVLHAMRSVGSXXXXXXXXXXAYCWSSSCFHQGDMVFGSGFMVSMAMLQQKVT 65
           NGFSGFRGV++ M+++ S           Y      +  GD    +G   +M  L+Q+V 
Sbjct: 172 NGFSGFRGVMNTMKNINSLLLVILMQGLVY------YIPGDTTVPTG---TMMRLKQRVA 222

Query: 66  XXXXXXXXXXXXLLFEFQQAKIAMEELKVELERMAGYE-----AHGDDIQEKVENVKSCF 120
                       +++E++++K AMEELKVELER          A    ++E++EN+K   
Sbjct: 223 AEMERIGVRKGMMMYEYRRSKTAMEELKVELERRCCGGGGEEEAVEKGLRERIENLKGSV 282

Query: 121 GLLRCGVETITGQLDDFFDEIVEGRKKLLDMCSHR 155
           G LR G E+I  Q+DDFFD+IV+GRK LLD CSHR
Sbjct: 283 GSLRNGTESIVAQIDDFFDDIVDGRKMLLDYCSHR 317