Miyakogusa Predicted Gene

Lj6g3v2274500.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274500.1 Non Chatacterized Hit- tr|C5XRC0|C5XRC0_SORBI
Putative uncharacterized protein Sb03g041420
OS=Sorghu,37.1,0.000000002,seg,NULL; coiled-coil,NULL,CUFF.60982.1
         (304 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77855.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   232   3e-61
AT1G22030.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein BY...   229   2e-60

>AT1G77855.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G22030.1); Has 120 Blast hits to 120 proteins
           in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:29277244-29278388 REVERSE
           LENGTH=317
          Length = 317

 Score =  232 bits (591), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 132/305 (43%), Positives = 185/305 (60%), Gaps = 22/305 (7%)

Query: 2   MGSSCTNSSINGFYNFLTQGLNDLHQSFLSHNFMSIQFLSQVISSLQSFHSQLTILVCKL 61
           M  SC+NS +NGFY+FL + + DL + ++S+NFMS+QFL +VI  L++ HS LT+LV KL
Sbjct: 1   MDQSCSNS-VNGFYSFLNRSMEDLERVYISNNFMSLQFLQRVICLLRTSHSHLTLLVQKL 59

Query: 62  RLPVGGKWLDEYMDESSRLWDACHVLKSAISGIEXXXXXXXXXXXXLDG-YHH---FTPE 117
            LPVG KWLD+YMDE+S+LWD CHV+KSAIS IE            LDG YHH    +P+
Sbjct: 60  NLPVGDKWLDDYMDETSKLWDVCHVIKSAISTIESFCSSAISITSTLDGHYHHRRLLSPQ 119

Query: 118 LSRQVIRAINVCQREILGLEEENKSLVETRIQ--PLSQCLYQNISVMESKL-NGFSGFRG 174
           +SRQVIRAI+ C+RE +G+EEEN++L+E RIQ  P          +  SK+ NGFSGFRG
Sbjct: 120 ISRQVIRAISGCRREAVGIEEENRALMENRIQRFPFWSEQVTTTGMESSKIQNGFSGFRG 179

Query: 175 VLHAMRSVGSXXXXXXXXXXAYCWSSSCFHQGDMVFGSGFMVSMAMLQQKVTXXXXXXXX 234
           V++ M+++ S           Y      +  GD    +G   +M  L+Q+V         
Sbjct: 180 VMNTMKNINSLLLVILMQGLVY------YIPGDTTVPTG---TMMRLKQRVAAEMERIGV 230

Query: 235 XXXXLLFEFQQAKIAMEELKVEL-----ERMAGYEAHGDDIQEKVENVKSCFGLLRCGVE 289
               +++E++++K AMEELKVEL           EA    ++E++EN+K   G LR G E
Sbjct: 231 RKGMMMYEYRRSKTAMEELKVELERRCCGGGGEEEAVEKGLRERIENLKGSVGSLRNGTE 290

Query: 290 TITGQ 294
           +I  Q
Sbjct: 291 SIVAQ 295


>AT1G22030.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein
           BYPASS related (InterPro:IPR008511); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in
           17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
           - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:7759337-7760415 REVERSE
           LENGTH=333
          Length = 333

 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/324 (42%), Positives = 189/324 (58%), Gaps = 24/324 (7%)

Query: 2   MGSSCTNSSINGFYNFLTQGLNDLHQSFLSHNFMSIQFLSQVISSLQSFHSQLTILVCKL 61
           M  SC NS +NGFY+FL + + DL + +LS+NFMS+ FL + +  L++ HS LT+LV KL
Sbjct: 1   MDPSCANS-VNGFYSFLNRSMEDLERVYLSNNFMSVHFLQRALCLLRTSHSHLTLLVQKL 59

Query: 62  RLPVGGKWLDEYMDESSRLWDACHVLKSAISGIEXXXXXXXXXXXXLDGYHHFTPELSRQ 121
           +LPVG KWLDEYMDESS+LW+AC V+KSA+S +E            LD     +P+LSRQ
Sbjct: 60  QLPVGDKWLDEYMDESSKLWEACLVIKSAVSSVENFSSAGISIASTLD--RRLSPQLSRQ 117

Query: 122 VIRAINVCQREILGLEEENKSLVETRIQPLSQCLYQ-NISVMESKL---NGFSGFRGVLH 177
           VIRAI+ C+RE +G+EEEN++L+E R+Q       Q + + MES     NGFSGFRGVL+
Sbjct: 118 VIRAISGCRREAIGIEEENRALMENRVQRFPFWSEQTSATAMESSTKLQNGFSGFRGVLY 177

Query: 178 AMRSVGSXXXXXXXXXXAYCWSSSCFHQGDMVFG------SGFMVSMAMLQQKVTXXXXX 231
           A R++ S           YC+      Q             GF  +M  LQQ+V      
Sbjct: 178 ATRNMSSLLLMVLMNGLVYCFPGDAATQTQTQITQTQSQVGGFAGAMGRLQQRVAAEVGR 237

Query: 232 XXXXXXXLLFEFQQAKIAMEELKVEL-----------ERMAGYEAHGDDIQEKVENVKSC 280
                  L+ E++++K A+EELK EL                 E    +++E+VEN+K  
Sbjct: 238 MGIRKGILMHEYRRSKAALEELKAELERRFCGGGGGGGEREEEEEDERELRERVENLKGY 297

Query: 281 FGLLRCGVETITGQLDDFFDEIVE 304
           FG LR G E+I  Q+DDFFDEIVE
Sbjct: 298 FGNLRNGTESIVAQIDDFFDEIVE 321