Miyakogusa Predicted Gene
- Lj6g3v2274500.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2274500.1 Non Chatacterized Hit- tr|C5XRC0|C5XRC0_SORBI
Putative uncharacterized protein Sb03g041420
OS=Sorghu,37.1,0.000000002,seg,NULL; coiled-coil,NULL,CUFF.60982.1
(304 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G77855.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 232 3e-61
AT1G22030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein BY... 229 2e-60
>AT1G77855.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G22030.1); Has 120 Blast hits to 120 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:29277244-29278388 REVERSE
LENGTH=317
Length = 317
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 132/305 (43%), Positives = 185/305 (60%), Gaps = 22/305 (7%)
Query: 2 MGSSCTNSSINGFYNFLTQGLNDLHQSFLSHNFMSIQFLSQVISSLQSFHSQLTILVCKL 61
M SC+NS +NGFY+FL + + DL + ++S+NFMS+QFL +VI L++ HS LT+LV KL
Sbjct: 1 MDQSCSNS-VNGFYSFLNRSMEDLERVYISNNFMSLQFLQRVICLLRTSHSHLTLLVQKL 59
Query: 62 RLPVGGKWLDEYMDESSRLWDACHVLKSAISGIEXXXXXXXXXXXXLDG-YHH---FTPE 117
LPVG KWLD+YMDE+S+LWD CHV+KSAIS IE LDG YHH +P+
Sbjct: 60 NLPVGDKWLDDYMDETSKLWDVCHVIKSAISTIESFCSSAISITSTLDGHYHHRRLLSPQ 119
Query: 118 LSRQVIRAINVCQREILGLEEENKSLVETRIQ--PLSQCLYQNISVMESKL-NGFSGFRG 174
+SRQVIRAI+ C+RE +G+EEEN++L+E RIQ P + SK+ NGFSGFRG
Sbjct: 120 ISRQVIRAISGCRREAVGIEEENRALMENRIQRFPFWSEQVTTTGMESSKIQNGFSGFRG 179
Query: 175 VLHAMRSVGSXXXXXXXXXXAYCWSSSCFHQGDMVFGSGFMVSMAMLQQKVTXXXXXXXX 234
V++ M+++ S Y + GD +G +M L+Q+V
Sbjct: 180 VMNTMKNINSLLLVILMQGLVY------YIPGDTTVPTG---TMMRLKQRVAAEMERIGV 230
Query: 235 XXXXLLFEFQQAKIAMEELKVEL-----ERMAGYEAHGDDIQEKVENVKSCFGLLRCGVE 289
+++E++++K AMEELKVEL EA ++E++EN+K G LR G E
Sbjct: 231 RKGMMMYEYRRSKTAMEELKVELERRCCGGGGEEEAVEKGLRERIENLKGSVGSLRNGTE 290
Query: 290 TITGQ 294
+I Q
Sbjct: 291 SIVAQ 295
>AT1G22030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
BYPASS related (InterPro:IPR008511); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
- 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:7759337-7760415 REVERSE
LENGTH=333
Length = 333
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/324 (42%), Positives = 189/324 (58%), Gaps = 24/324 (7%)
Query: 2 MGSSCTNSSINGFYNFLTQGLNDLHQSFLSHNFMSIQFLSQVISSLQSFHSQLTILVCKL 61
M SC NS +NGFY+FL + + DL + +LS+NFMS+ FL + + L++ HS LT+LV KL
Sbjct: 1 MDPSCANS-VNGFYSFLNRSMEDLERVYLSNNFMSVHFLQRALCLLRTSHSHLTLLVQKL 59
Query: 62 RLPVGGKWLDEYMDESSRLWDACHVLKSAISGIEXXXXXXXXXXXXLDGYHHFTPELSRQ 121
+LPVG KWLDEYMDESS+LW+AC V+KSA+S +E LD +P+LSRQ
Sbjct: 60 QLPVGDKWLDEYMDESSKLWEACLVIKSAVSSVENFSSAGISIASTLD--RRLSPQLSRQ 117
Query: 122 VIRAINVCQREILGLEEENKSLVETRIQPLSQCLYQ-NISVMESKL---NGFSGFRGVLH 177
VIRAI+ C+RE +G+EEEN++L+E R+Q Q + + MES NGFSGFRGVL+
Sbjct: 118 VIRAISGCRREAIGIEEENRALMENRVQRFPFWSEQTSATAMESSTKLQNGFSGFRGVLY 177
Query: 178 AMRSVGSXXXXXXXXXXAYCWSSSCFHQGDMVFG------SGFMVSMAMLQQKVTXXXXX 231
A R++ S YC+ Q GF +M LQQ+V
Sbjct: 178 ATRNMSSLLLMVLMNGLVYCFPGDAATQTQTQITQTQSQVGGFAGAMGRLQQRVAAEVGR 237
Query: 232 XXXXXXXLLFEFQQAKIAMEELKVEL-----------ERMAGYEAHGDDIQEKVENVKSC 280
L+ E++++K A+EELK EL E +++E+VEN+K
Sbjct: 238 MGIRKGILMHEYRRSKAALEELKAELERRFCGGGGGGGEREEEEEDERELRERVENLKGY 297
Query: 281 FGLLRCGVETITGQLDDFFDEIVE 304
FG LR G E+I Q+DDFFDEIVE
Sbjct: 298 FGNLRNGTESIVAQIDDFFDEIVE 321