Miyakogusa Predicted Gene

Lj6g3v2272120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2272120.1 Non Chatacterized Hit- tr|I3SFC9|I3SFC9_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,70.67,7e-19,seg,NULL; coiled-coil,NULL,CUFF.60957.1
         (211 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10890.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    62   3e-10
AT5G13340.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    52   3e-07

>AT1G10890.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING:
           LP.04 four leaves visible, 4 anthesis, petal
           differentiation and expansion stage; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435
           proteins in 698 species: Archae - 22; Bacteria - 971;
           Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses -
           101; Other Eukaryotes - 3081 (source: NCBI BLink). |
           chr1:3628081-3630545 FORWARD LENGTH=288
          Length = 288

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 41/49 (83%)

Query: 132 IEEETAKRVEEAIRKRVEESLNSEEVQVEIQRRLEEGRKRLIVEVAVQL 180
           IEEET KRVEEAIRK+VEESL SE++++EI   LEEGRKRL  EVA QL
Sbjct: 129 IEEETVKRVEEAIRKKVEESLQSEKIKMEILTLLEEGRKRLNEEVAAQL 177


>AT5G13340.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807
           proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:4277939-4279397 REVERSE LENGTH=242
          Length = 242

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%)

Query: 132 IEEETAKRVEEAIRKRVEESLNSEEVQVEIQRRLEEGRKRLIVEVAVQLXXXXXXXXXXX 191
           +EEETA+R+EEA+RK VEE + +EEV+ EI+RR +E  +++ ++V +QL           
Sbjct: 92  LEEETAQRIEEAVRKNVEERMKTEEVKEEIERRTKEAYEKMFLDVEIQLKKEKEAALNEA 151

Query: 192 XXXXXXXXXXXXDLDRMLEE 211
                       +LD+MLEE
Sbjct: 152 RRKEEQARREREELDKMLEE 171