Miyakogusa Predicted Gene

Lj6g3v2257830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2257830.1 tr|B9HV48|B9HV48_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_566242 PE=4
SV=1,27.75,0.000000003,seg,NULL; XS,XS domain; TRANSCRIPTION FACTOR
X1-LIKE,NULL; RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATE,CUFF.60995.1
         (475 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23570.1 | Symbols: SGS3, ATSGS3 | XS domain-containing prote...   300   1e-81
AT3G22430.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Domain of ...    60   2e-09

>AT5G23570.1 | Symbols: SGS3, ATSGS3 | XS domain-containing protein
           / XS zinc finger domain-containing protein-related |
           chr5:7943621-7945874 FORWARD LENGTH=625
          Length = 625

 Score =  300 bits (769), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/331 (46%), Positives = 214/331 (64%), Gaps = 38/331 (11%)

Query: 148 KGHEGAKKNKWCRDFFGRLDKVASQVEKLDSPSIRWHCPICRGGPGAIDWYHGLQPLYVH 207
           K H   K+NKW + FFG LD ++  +E+++ P  +WHCP C+ GPGAIDWY+ L PL  H
Sbjct: 193 KSHGSRKQNKWFKKFFGSLDSLS--IEQINEPQRQWHCPACQNGPGAIDWYN-LHPLLAH 249

Query: 208 AMTIQVRFAIVHRLFADTLKEECRRRGAPLT--SEASGLWEGLDKKLKDHEIVWPPMVII 265
           A T   R   +HR  A+ L+++ + RGA +    E  G W+GL +  KD+EIVWPPMVII
Sbjct: 250 ARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYGQWKGLGEDEKDYEIVWPPMVII 309

Query: 266 MNTKSQRGENNKVQQYSCLVFIRVFVFCYFALCFSYAKFFELQWTGMGNQELLDSFSDYA 325
           MNT+  + +N+K                               W GMGNQELL+ F  Y 
Sbjct: 310 MNTRLDKDDNDK-------------------------------WLGMGNQELLEYFDKYE 338

Query: 326 AMKARHSYGPQGHRGMSVLIFAETPAGYLEAMRLHKHFKEQGRDKEAWGRCRNPYVPGGR 385
           A++ARHSYGPQGHRGMSVL+F  +  GYLEA RLH+   E G D+ AWG+ R+ +  GG 
Sbjct: 339 ALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQKRSMF-SGGV 397

Query: 386 RQLYGYLASGEDLENFNQHS-GKTKLKYELKSYQETVESKIKHINDDIQQLDYFKDKAAK 444
           RQLYG+LA+ +DL+ FNQHS GKT+LK+ELKSYQE V  +++ I++D QQL+YFK+K +K
Sbjct: 398 RQLYGFLATKQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSK 457

Query: 445 EQFKSEVYANTLSKVTDKLRQAKLENRVVRE 475
           +   ++V   +L  +++KLR+   +NR+VR+
Sbjct: 458 QNKHAKVLEESLEIMSEKLRRTAEDNRIVRQ 488


>AT3G22430.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Domain of
           unknown function XS (InterPro:IPR005380); BEST
           Arabidopsis thaliana protein match is: XS
           domain-containing protein / XS zinc finger
           domain-containing protein-related (TAIR:AT5G23570.1);
           Has 565 Blast hits to 510 proteins in 121 species:
           Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32;
           Plants - 51; Viruses - 4; Other Eukaryotes - 195
           (source: NCBI BLink). | chr3:7953455-7957605 FORWARD
           LENGTH=510
          Length = 510

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 55/188 (29%)

Query: 257 IVWPPMVIIMNTKSQRGENNKVQQYSCLVFIRVFVFCYFALCFSYAKFFELQWTGMGNQE 316
           I+WPP VI+ NT + +G+  +++                               G GN+ 
Sbjct: 358 IIWPPHVIVQNTSTGKGKEGRME-------------------------------GFGNKT 386

Query: 317 LLDSFSDYAAM--KARHSYGPQGHRGMSVLIFAETPAGYLEAMRLHKHFKEQGRDKEAWG 374
           + +   +      K++  YG +GH G+++  FA   +G  +AMR+ ++F++  R +++WG
Sbjct: 387 MDNRIRELGLTGGKSKSLYGREGHLGITLFKFAGDDSGLRDAMRMAEYFEKINRGRKSWG 446

Query: 375 RCRNPYVPG------------------GRRQLYGYLASGEDLENFNQHSGKTKLKYELKS 416
           R + P  P                    +R  YGYLA+  DL+  +    +TK K  ++S
Sbjct: 447 RVQ-PLTPSKDDEKNPGLVEVDGRTGEKKRIFYGYLATVTDLDKVDV---ETKKKTTIES 502

Query: 417 YQETVESK 424
            +E   +K
Sbjct: 503 LRELTRTK 510