Miyakogusa Predicted Gene

Lj6g3v2257810.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2257810.1 tr|B9GZQ9|B9GZQ9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_712240 PE=4
SV=1,56.84,2e-18,SUBFAMILY NOT NAMED,NULL; PYM PROTEIN,NULL;
Mago-bind,Exon junction complex, Pym; Pym (Within the bg,CUFF.60934.1
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11400.3 | Symbols: PYM | partner of Y14-MAGO | chr1:3838777-...   190   7e-49
AT1G11400.2 | Symbols: PYM | partner of Y14-MAGO | chr1:3838777-...   190   7e-49
AT1G11400.1 | Symbols: PYM | partner of Y14-MAGO | chr1:3838777-...   190   7e-49

>AT1G11400.3 | Symbols: PYM | partner of Y14-MAGO |
           chr1:3838777-3839978 FORWARD LENGTH=204
          Length = 204

 Score =  190 bits (482), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 142/214 (66%), Gaps = 16/214 (7%)

Query: 4   SGSEDQASDQLSKTLKQGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYHPKPALEFK 63
           SG + +   +LSK LK+GERIL PTRRPDGTLRKPIRIR GY P++EV  Y  K +L  K
Sbjct: 5   SGEQGKRMAELSKNLKEGERILEPTRRPDGTLRKPIRIRPGYTPEDEVVKYQSKGSL-MK 63

Query: 64  KEMASHSGPPGYDPELEPKPRTKAGKRNERKKEKRLQAALDKDSNVAQDSGEQETLATVE 123
           KEMAS  GPPGY+P+  PKP+TKA KRNERKKEKRLQA  +K +N ++D           
Sbjct: 64  KEMASQ-GPPGYEPDPAPKPKTKAAKRNERKKEKRLQATAEK-ANSSEDG---------- 111

Query: 124 NSSHSSEPVHSLTTQMNELAVSGDSSIVTPAANSVDGSESGQDIEXXXXXXXXXXXXTEA 183
           ++S+ S+ V+ L ++M  L VS ++ +   A N      +G+D+E            TEA
Sbjct: 112 SASNGSQSVNVLASEMEALDVSSNNDVCGGAPNP---GTTGEDVEKRIRALKKKIRLTEA 168

Query: 184 LQQKSAEQDLKPEQLEKLAKLDDWRKELKQLEDK 217
            QQK+A +DL PEQLEK +KL++WR+ELK LEDK
Sbjct: 169 QQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202


>AT1G11400.2 | Symbols: PYM | partner of Y14-MAGO |
           chr1:3838777-3839978 FORWARD LENGTH=204
          Length = 204

 Score =  190 bits (482), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 142/214 (66%), Gaps = 16/214 (7%)

Query: 4   SGSEDQASDQLSKTLKQGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYHPKPALEFK 63
           SG + +   +LSK LK+GERIL PTRRPDGTLRKPIRIR GY P++EV  Y  K +L  K
Sbjct: 5   SGEQGKRMAELSKNLKEGERILEPTRRPDGTLRKPIRIRPGYTPEDEVVKYQSKGSL-MK 63

Query: 64  KEMASHSGPPGYDPELEPKPRTKAGKRNERKKEKRLQAALDKDSNVAQDSGEQETLATVE 123
           KEMAS  GPPGY+P+  PKP+TKA KRNERKKEKRLQA  +K +N ++D           
Sbjct: 64  KEMASQ-GPPGYEPDPAPKPKTKAAKRNERKKEKRLQATAEK-ANSSEDG---------- 111

Query: 124 NSSHSSEPVHSLTTQMNELAVSGDSSIVTPAANSVDGSESGQDIEXXXXXXXXXXXXTEA 183
           ++S+ S+ V+ L ++M  L VS ++ +   A N      +G+D+E            TEA
Sbjct: 112 SASNGSQSVNVLASEMEALDVSSNNDVCGGAPNP---GTTGEDVEKRIRALKKKIRLTEA 168

Query: 184 LQQKSAEQDLKPEQLEKLAKLDDWRKELKQLEDK 217
            QQK+A +DL PEQLEK +KL++WR+ELK LEDK
Sbjct: 169 QQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202


>AT1G11400.1 | Symbols: PYM | partner of Y14-MAGO |
           chr1:3838777-3839978 FORWARD LENGTH=204
          Length = 204

 Score =  190 bits (482), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 142/214 (66%), Gaps = 16/214 (7%)

Query: 4   SGSEDQASDQLSKTLKQGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYHPKPALEFK 63
           SG + +   +LSK LK+GERIL PTRRPDGTLRKPIRIR GY P++EV  Y  K +L  K
Sbjct: 5   SGEQGKRMAELSKNLKEGERILEPTRRPDGTLRKPIRIRPGYTPEDEVVKYQSKGSL-MK 63

Query: 64  KEMASHSGPPGYDPELEPKPRTKAGKRNERKKEKRLQAALDKDSNVAQDSGEQETLATVE 123
           KEMAS  GPPGY+P+  PKP+TKA KRNERKKEKRLQA  +K +N ++D           
Sbjct: 64  KEMASQ-GPPGYEPDPAPKPKTKAAKRNERKKEKRLQATAEK-ANSSEDG---------- 111

Query: 124 NSSHSSEPVHSLTTQMNELAVSGDSSIVTPAANSVDGSESGQDIEXXXXXXXXXXXXTEA 183
           ++S+ S+ V+ L ++M  L VS ++ +   A N      +G+D+E            TEA
Sbjct: 112 SASNGSQSVNVLASEMEALDVSSNNDVCGGAPNP---GTTGEDVEKRIRALKKKIRLTEA 168

Query: 184 LQQKSAEQDLKPEQLEKLAKLDDWRKELKQLEDK 217
            QQK+A +DL PEQLEK +KL++WR+ELK LEDK
Sbjct: 169 QQQKTASRDLNPEQLEKFSKLEEWRQELKALEDK 202