Miyakogusa Predicted Gene

Lj6g3v2245600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2245600.1 Non Chatacterized Hit- tr|I1HQS0|I1HQS0_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,41.84,2e-19,CBS,Cystathionine beta-synthase, core; no
description,Aldolase-type TIM barrel; seg,NULL; Domain in
,CUFF.60965.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35440.1 | Symbols: CLC-E, ATCLC-E, CLCE | chloride channel E...   105   7e-24
AT4G35440.2 | Symbols: CLC-E | chloride channel E | chr4:1683636...    99   1e-21

>AT4G35440.1 | Symbols: CLC-E, ATCLC-E, CLCE | chloride channel E |
           chr4:16836384-16839345 REVERSE LENGTH=710
          Length = 710

 Score =  105 bits (263), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 78/137 (56%), Gaps = 2/137 (1%)

Query: 1   MKTRYVSVSMCTLLTEVIDLMLVEKQSCAVXXXXXXXXXXXXXXXXXQDYGKFAKARSKN 60
           M+TR+ +V M T L E +  ML+EKQSCA+                 Q++ K  K  +  
Sbjct: 565 MRTRFATVMMSTSLEEALTRMLIEKQSCALIVDPDNIFLGILTLSDIQEFSKARKEGNNR 624

Query: 61  PKELLVSELCLLDGGICSVPWTATPDMELRFAQMIMKEHGVDQVPVVRNIYE--KTYPVG 118
           PK++ V+++C   GG C VPWT TPDM+L  AQ IM +H +  V VV    +  + +PVG
Sbjct: 625 PKDIFVNDICSRSGGKCKVPWTVTPDMDLLAAQTIMNKHELSHVAVVSGSIDAPRIHPVG 684

Query: 119 ILDPDSINLTCSALATR 135
           +LD + I LT  ALATR
Sbjct: 685 VLDRECITLTRRALATR 701


>AT4G35440.2 | Symbols: CLC-E | chloride channel E |
           chr4:16836367-16839345 REVERSE LENGTH=749
          Length = 749

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 2/130 (1%)

Query: 1   MKTRYVSVSMCTLLTEVIDLMLVEKQSCAVXXXXXXXXXXXXXXXXXQDYGKFAKARSKN 60
           M+TR+ +V M T L E +  ML+EKQSCA+                 Q++ K  K  +  
Sbjct: 565 MRTRFATVMMSTSLEEALTRMLIEKQSCALIVDPDNIFLGILTLSDIQEFSKARKEGNNR 624

Query: 61  PKELLVSELCLLDGGICSVPWTATPDMELRFAQMIMKEHGVDQVPVVRNIYE--KTYPVG 118
           PK++ V+++C   GG C VPWT TPDM+L  AQ IM +H +  V VV    +  + +PVG
Sbjct: 625 PKDIFVNDICSRSGGKCKVPWTVTPDMDLLAAQTIMNKHELSHVAVVSGSIDAPRIHPVG 684

Query: 119 ILDPDSINLT 128
           +LD + I LT
Sbjct: 685 VLDRECITLT 694