Miyakogusa Predicted Gene

Lj6g3v2222110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2222110.1 Non Chatacterized Hit- tr|I1IAC3|I1IAC3_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,68.12,2e-19,UCR_hinge,Ubiquinol-cytochrome C reductase hinge
domain; Non-heme 11 kDa protein of cytochrome bc1 c,CUFF.60919.1
         (69 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15120.1 | Symbols:  | Ubiquinol-cytochrome C reductase hinge...   126   3e-30
AT1G15120.2 | Symbols:  | Ubiquinol-cytochrome C reductase hinge...   114   2e-26
AT2G01090.2 | Symbols:  | Ubiquinol-cytochrome C reductase hinge...   102   4e-23
AT2G01090.1 | Symbols:  | Ubiquinol-cytochrome C reductase hinge...   102   4e-23

>AT1G15120.1 | Symbols:  | Ubiquinol-cytochrome C reductase hinge
          protein | chr1:5203091-5203897 FORWARD LENGTH=69
          Length = 69

 Score =  126 bits (316), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 63/69 (91%)

Query: 1  MADEEPVDPKGYLEESCKPKCVKPLLEYQACVKRIHGDETGQKHCTGQYFDYWACVDKCV 60
          MAD+E VDPK YLEESCKPKCVKPLLEYQACVKRI GD++G KHCTGQYFDYW C+DKCV
Sbjct: 1  MADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCV 60

Query: 61 APKLFTKLK 69
          APKLF KLK
Sbjct: 61 APKLFAKLK 69


>AT1G15120.2 | Symbols:  | Ubiquinol-cytochrome C reductase hinge
           protein | chr1:5202648-5203950 FORWARD LENGTH=166
          Length = 166

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 56/64 (87%)

Query: 1   MADEEPVDPKGYLEESCKPKCVKPLLEYQACVKRIHGDETGQKHCTGQYFDYWACVDKCV 60
           MAD+E VDPK YLEESCKPKCVKPLLEYQACVKRI GD++G KHCTGQYFDYW C+DKC 
Sbjct: 68  MADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCF 127

Query: 61  APKL 64
             ++
Sbjct: 128 DTEM 131


>AT2G01090.2 | Symbols:  | Ubiquinol-cytochrome C reductase hinge
          protein | chr2:80179-80957 FORWARD LENGTH=62
          Length = 62

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 52/61 (85%)

Query: 1  MADEEPVDPKGYLEESCKPKCVKPLLEYQACVKRIHGDETGQKHCTGQYFDYWACVDKCV 60
          M +E+ VD K Y EESCKPKCVKPLLEYQACVKRI  DE+G KHCTGQYFDYW CVDKCV
Sbjct: 1  MPEEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCV 60

Query: 61 A 61
          +
Sbjct: 61 S 61


>AT2G01090.1 | Symbols:  | Ubiquinol-cytochrome C reductase hinge
          protein | chr2:80179-80957 FORWARD LENGTH=62
          Length = 62

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 52/61 (85%)

Query: 1  MADEEPVDPKGYLEESCKPKCVKPLLEYQACVKRIHGDETGQKHCTGQYFDYWACVDKCV 60
          M +E+ VD K Y EESCKPKCVKPLLEYQACVKRI  DE+G KHCTGQYFDYW CVDKCV
Sbjct: 1  MPEEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCV 60

Query: 61 A 61
          +
Sbjct: 61 S 61