Miyakogusa Predicted Gene

Lj6g3v2222040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2222040.1 Non Chatacterized Hit- tr|I1MDT8|I1MDT8_SOYBN
Uncharacterized protein OS=Glycine max PE=3
SV=1,90.72,0,DDC_GAD_HDC_YDC,Pyridoxal-phosphate binding site;
seg,NULL; Pyridoxal_deC,Pyridoxal phosphate-depend,CUFF.60906.1
         (485 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43710.1 | Symbols: emb1075 | Pyridoxal phosphate (PLP)-depen...   763   0.0  
AT1G65960.1 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:2...    56   4e-08
AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:2...    56   5e-08
AT2G02010.1 | Symbols: GAD4 | glutamate decarboxylase 4 | chr2:4...    51   2e-06
AT2G02000.1 | Symbols: GAD3 | glutamate decarboxylase 3 | chr2:4...    51   2e-06
AT3G17760.2 | Symbols: GAD5 | glutamate decarboxylase 5 | chr3:6...    50   5e-06
AT3G17760.1 | Symbols: GAD5 | glutamate decarboxylase 5 | chr3:6...    50   5e-06

>AT1G43710.1 | Symbols: emb1075 | Pyridoxal phosphate
           (PLP)-dependent transferases superfamily protein |
           chr1:16486534-16488298 REVERSE LENGTH=482
          Length = 482

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/490 (74%), Positives = 419/490 (85%), Gaps = 13/490 (2%)

Query: 1   MVGSFGVLADDLSINGA-----VEPLPEDFDTTAIIKDXXXXXXXXXXXXXXEAQVSKGK 55
           MVGS   L  D +++ A     ++ L +DFD TA++ +               A    G 
Sbjct: 1   MVGS---LESDQTLSMATLIEKLDILSDDFDPTAVVTEPLPPPVTNGI----GADKGGGG 53

Query: 56  EKREIVLGRNIHTTCLEVTEPEADDEVTGDREANMASVLARYKKSLTERTKHHLGYPYNL 115
            +RE+VLGRNIHTT L VTEPE +DE TGD+EA MASVLARY+K+L ERTK+HLGYPYNL
Sbjct: 54  GEREMVLGRNIHTTSLAVTEPEVNDEFTGDKEAYMASVLARYRKTLVERTKNHLGYPYNL 113

Query: 116 DFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNC 175
           DFDYGAL QLQHFSINNLGDPFIESNYGVHSR FEVGVLDWFARLWE+E+++YWGYITNC
Sbjct: 114 DFDYGALGQLQHFSINNLGDPFIESNYGVHSRPFEVGVLDWFARLWEIERDDYWGYITNC 173

Query: 176 GTEGNLHGILVGREVYPDGVLYASRESHYSIFKAARMYRMECVKVDTLWSGEIDCDDFKT 235
           GTEGNLHGILVGRE++PDG+LYASRESHYS+FKAARMYRMEC KVDTL SGEIDCDD + 
Sbjct: 174 GTEGNLHGILVGREMFPDGILYASRESHYSVFKAARMYRMECEKVDTLMSGEIDCDDLRK 233

Query: 236 KLLLHQDKPAIINVNIGTTVKGAVDDLDMVIKKLEEAGFSHDRFYIHVDGALFGLMMPFV 295
           KLL ++DKPAI+NVNIGTTVKGAVDDLD+VIK LEE GFSHDRFYIH DGALFGLMMPFV
Sbjct: 234 KLLANKDKPAILNVNIGTTVKGAVDDLDLVIKTLEECGFSHDRFYIHCDGALFGLMMPFV 293

Query: 296 KQAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEYVNALSRDVEYLASRDATIMGSR 355
           K+APKVTF KPIGSVSVSGHKFVGCPMPCGVQITR+E++  LS +VEYLASRDATIMGSR
Sbjct: 294 KRAPKVTFNKPIGSVSVSGHKFVGCPMPCGVQITRMEHIKVLSSNVEYLASRDATIMGSR 353

Query: 356 NGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLVEAGIGAMLNELSSTVVFERPH 415
           NGHAP+FLWYTLNRKGY+GFQKEVQKCLRNAHY KDRL EAGI AMLNELSSTVVFERP 
Sbjct: 354 NGHAPLFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPK 413

Query: 416 DEEFIRKWQLACKGNIAHVVVMPNITIEKLDDFLEELMQNRATWFQDGKYTPYCIASDVG 475
           DEEF+R+WQLAC+G+IAHVVVMP++TIEKLD+FL++L+++R  W++DG   P C+AS+VG
Sbjct: 414 DEEFVRRWQLACQGDIAHVVVMPSVTIEKLDNFLKDLVKHRLIWYEDGSQPP-CLASEVG 472

Query: 476 EKDCLCALHK 485
             +C+C  HK
Sbjct: 473 TNNCICPAHK 482


>AT1G65960.1 | Symbols: GAD2 | glutamate decarboxylase 2 |
           chr1:24555868-24557253 FORWARD LENGTH=365
          Length = 365

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 14/193 (7%)

Query: 208 KAARMYRMECVKVDTLWSGEIDCDDFKTKLLLHQDKPAIINVNIGTTVKGAVDDL----D 263
           K AR + +E  +V+ L  G    D  K   ++ ++   +  + +G+T+ G  +D+    D
Sbjct: 39  KFARYFEVELKEVN-LSEGYYVMDPDKAAEMVDENTICVAAI-LGSTLNGEFEDVKRLND 96

Query: 264 MVIKKLEEAGFSHDRFYIHVDGALFGLMMPFVKQAPKVTFKKP-IGSVSVSGHKFVGCPM 322
           +++KK EE G++     IHVD A  G + PF+    +  F+ P + S++VSGHK+     
Sbjct: 97  LLVKKNEETGWNTP---IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYA 153

Query: 323 PCGVQITRL--EYVNALSRDVEYLASRDA--TIMGSRNGHAPIFLWYTLNRKGYRGFQKE 378
             G  + R   +    L   + YL +     T+  S+     I  +Y L R G+ G++  
Sbjct: 154 GIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNV 213

Query: 379 VQKCLRNAHYFKD 391
           ++ C+ N    K+
Sbjct: 214 MENCIENMVVLKE 226


>AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 |
           chr1:24552094-24557253 FORWARD LENGTH=494
          Length = 494

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 14/193 (7%)

Query: 208 KAARMYRMECVKVDTLWSGEIDCDDFKTKLLLHQDKPAIINVNIGTTVKGAVDDL----D 263
           K AR + +E  +V+ L  G    D  K   ++ ++   +  + +G+T+ G  +D+    D
Sbjct: 168 KFARYFEVELKEVN-LSEGYYVMDPDKAAEMVDENTICVAAI-LGSTLNGEFEDVKRLND 225

Query: 264 MVIKKLEEAGFSHDRFYIHVDGALFGLMMPFVKQAPKVTFKKP-IGSVSVSGHKFVGCPM 322
           +++KK EE G++     IHVD A  G + PF+    +  F+ P + S++VSGHK+     
Sbjct: 226 LLVKKNEETGWNTP---IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYA 282

Query: 323 PCGVQITRL--EYVNALSRDVEYLASRDA--TIMGSRNGHAPIFLWYTLNRKGYRGFQKE 378
             G  + R   +    L   + YL +     T+  S+     I  +Y L R G+ G++  
Sbjct: 283 GIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNV 342

Query: 379 VQKCLRNAHYFKD 391
           ++ C+ N    K+
Sbjct: 343 MENCIENMVVLKE 355


>AT2G02010.1 | Symbols: GAD4 | glutamate decarboxylase 4 |
           chr2:474375-476495 REVERSE LENGTH=493
          Length = 493

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 12/156 (7%)

Query: 251 IGTTVKGAVDDL----DMVIKKLEEAGFSHDRFYIHVDGALFGLMMPFVKQAPKVTFKKP 306
           +G+T+ G  +D+    D++++K ++ G+      IHVD A  G + PF+    +  F+ P
Sbjct: 210 LGSTLTGEFEDVKLLNDLLVEKNKQTGWDTP---IHVDAASGGFIAPFLYPELEWDFRLP 266

Query: 307 -IGSVSVSGHKF--VGCPMPCGVQITRLEYVNALSRDVEYLASRDA--TIMGSRNGHAPI 361
            + S++VSGHK+  V   +   V  T+ +  + L   + YL +     T+  S+     I
Sbjct: 267 LVKSINVSGHKYGLVYAGIGWVVWRTKTDLPDELIFHINYLGADQPTFTLNFSKGSSQVI 326

Query: 362 FLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLVEAG 397
             +Y L R G+ G++  +  C  N    +  L + G
Sbjct: 327 AQYYQLIRLGFEGYRNVMDNCRENMMVLRQGLEKTG 362


>AT2G02000.1 | Symbols: GAD3 | glutamate decarboxylase 3 |
           chr2:469505-471997 REVERSE LENGTH=500
          Length = 500

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 14/199 (7%)

Query: 208 KAARMYRMECVKVDTLWSGEIDCDDFKTKLLLHQDKPAIINVNIGTTVKGAVDDL----D 263
           K AR + +E  +V  L  G    D  K   ++ ++   ++ + +G+T+ G  +D+    D
Sbjct: 169 KFARYFEVELKEVK-LREGYYVMDPDKAVEMVDENTICVVAI-LGSTLTGEFEDVKLLND 226

Query: 264 MVIKKLEEAGFSHDRFYIHVDGALFGLMMPFVKQAPKVTFKKP-IGSVSVSGHKF--VGC 320
           ++++K ++ G+      IHVD A  G + PF+    +  F+ P + S++VSGHK+  V  
Sbjct: 227 LLVEKNKKTGWDTP---IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA 283

Query: 321 PMPCGVQITRLEYVNALSRDVEYLASRDA--TIMGSRNGHAPIFLWYTLNRKGYRGFQKE 378
            +   V  T+ +  + L   + YL +     T+  S+     I  +Y L R G+ G++  
Sbjct: 284 GIGWVVWRTKTDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNV 343

Query: 379 VQKCLRNAHYFKDRLVEAG 397
           +  C  N    +  L + G
Sbjct: 344 MDNCRENMMVLRQGLEKTG 362


>AT3G17760.2 | Symbols: GAD5 | glutamate decarboxylase 5 |
           chr3:6078893-6080838 REVERSE LENGTH=494
          Length = 494

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 12/156 (7%)

Query: 251 IGTTVKGAVDDL----DMVIKKLEEAGFSHDRFYIHVDGALFGLMMPFVKQAPKVTFKKP 306
           +G+T+ G  +D+    D++ +K  E G+      IHVD A  G + PF+    +  F+ P
Sbjct: 209 LGSTLTGEFEDVKQLNDLLAEKNAETGWETP---IHVDAASGGFIAPFLYPDLEWDFRLP 265

Query: 307 -IGSVSVSGHKF--VGCPMPCGVQITRLEYVNALSRDVEYLASRDA--TIMGSRNGHAPI 361
            + S++VSGHK+  V   +   V  T+ +    L   + YL +     T+  S+     I
Sbjct: 266 WVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEELVFHINYLGADQPTFTLNFSKGSSQII 325

Query: 362 FLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLVEAG 397
             +Y   R G+ G++  ++ C+ NA   ++ +   G
Sbjct: 326 AQYYQFIRLGFEGYKNIMENCMDNARRLREGIEMTG 361


>AT3G17760.1 | Symbols: GAD5 | glutamate decarboxylase 5 |
           chr3:6078893-6080838 REVERSE LENGTH=494
          Length = 494

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 12/156 (7%)

Query: 251 IGTTVKGAVDDL----DMVIKKLEEAGFSHDRFYIHVDGALFGLMMPFVKQAPKVTFKKP 306
           +G+T+ G  +D+    D++ +K  E G+      IHVD A  G + PF+    +  F+ P
Sbjct: 209 LGSTLTGEFEDVKQLNDLLAEKNAETGWETP---IHVDAASGGFIAPFLYPDLEWDFRLP 265

Query: 307 -IGSVSVSGHKF--VGCPMPCGVQITRLEYVNALSRDVEYLASRDA--TIMGSRNGHAPI 361
            + S++VSGHK+  V   +   V  T+ +    L   + YL +     T+  S+     I
Sbjct: 266 WVKSINVSGHKYGLVYAGVGWVVWRTKDDLPEELVFHINYLGADQPTFTLNFSKGSSQII 325

Query: 362 FLWYTLNRKGYRGFQKEVQKCLRNAHYFKDRLVEAG 397
             +Y   R G+ G++  ++ C+ NA   ++ +   G
Sbjct: 326 AQYYQFIRLGFEGYKNIMENCMDNARRLREGIEMTG 361