Miyakogusa Predicted Gene
- Lj6g3v2221970.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2221970.1 Non Chatacterized Hit- tr|Q60EC1|Q60EC1_ORYSJ
Putative clathrin assembly protein OS=Oryza sativa
sub,47.86,4e-19,seg,NULL; ENTH,Epsin-like, N-terminal; CLATHRIN
ASSEMBLY PROTEIN,NULL; no description,ENTH/VHS; ANTH,CUFF.60891.1
(103 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03050.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | ch... 125 7e-30
AT4G02650.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | ch... 102 8e-23
AT1G05020.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | ch... 66 4e-12
AT4G32285.2 | Symbols: | ENTH/ANTH/VHS superfamily protein | ch... 55 1e-08
AT4G32285.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | ch... 55 1e-08
AT4G25940.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | ch... 53 3e-08
AT2G25430.1 | Symbols: | epsin N-terminal homology (ENTH) domai... 52 1e-07
>AT1G03050.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr1:707726-709860 FORWARD LENGTH=599
Length = 599
Score = 125 bits (313), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 72/102 (70%)
Query: 1 MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRRGKRGVVAYXXXXXXXXXXXXXX 60
MSDFRD S++ +WD+SAFVRTY+LYLDERL+++MQ+R GKRGV
Sbjct: 123 MSDFRDVSRSNSWDYSAFVRTYALYLDERLDFRMQARHGKRGVYCVGGEADEEEQDQAAA 182
Query: 61 XXXXXIVIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTG 102
IV+RS P+ +MK EQIF ++QHLQ LL+RFLACRPTG
Sbjct: 183 DLSTAIVVRSQPIAEMKTEQIFIRIQHLQQLLDRFLACRPTG 224
>AT4G02650.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr4:1156539-1158543 FORWARD LENGTH=611
Length = 611
Score = 102 bits (253), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 5/107 (4%)
Query: 1 MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRRGKRGVVAYXXXXXXXXXX---- 56
MSDFRD S++ +WD+SAFVRTY+LYLDERL+Y+MQ RRGK+
Sbjct: 123 MSDFRDASQSDSWDYSAFVRTYALYLDERLDYRMQGRRGKKKSGGGGGGDGDSGEEDDHR 182
Query: 57 -XXXXXXXXXIVIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTG 102
IV++S PV +MK E+IF+++QHLQ LL+RFLACRPTG
Sbjct: 183 GTSNDIRSKAIVVKSKPVAEMKTEKIFNRVQHLQQLLDRFLACRPTG 229
>AT1G05020.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr1:1435384-1437345 REVERSE LENGTH=653
Length = 653
Score = 66.2 bits (160), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 1 MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEY----KMQSRRGKRGVVAYXXXXXXXXXX 56
+S FRD+S + WDF+AFVRT++LYLDERL+ K+Q R R
Sbjct: 126 LSSFRDDSNSCPWDFTAFVRTFALYLDERLDCFLTGKLQRRYTNREQTG---RISTNSTT 182
Query: 57 XXXXXXXXXIVIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTG 102
I VRDMK + K+ + Q LL+R +A RPTG
Sbjct: 183 RSRFNPKAGIKSHEPAVRDMKPVMLLDKITYWQKLLDRAIATRPTG 228
>AT4G32285.2 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr4:15586003-15587910 FORWARD LENGTH=635
Length = 635
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 71 TPVRDMKLEQIFSKMQHLQLLLERFLACRPTGL 103
TP+R+M E+IF KM HLQ LL+RFL+CRPTGL
Sbjct: 224 TPLREMTPERIFGKMGHLQRLLDRFLSCRPTGL 256
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 1 MSDFRDNSKTGAWDFSAFVRTYSLYLDERLE 31
MSDFRD + + +WD SAFVRTY+ YLD+RLE
Sbjct: 120 MSDFRDEAHSSSWDHSAFVRTYASYLDQRLE 150
>AT4G32285.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr4:15586003-15587910 FORWARD LENGTH=635
Length = 635
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 71 TPVRDMKLEQIFSKMQHLQLLLERFLACRPTGL 103
TP+R+M E+IF KM HLQ LL+RFL+CRPTGL
Sbjct: 224 TPLREMTPERIFGKMGHLQRLLDRFLSCRPTGL 256
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 1 MSDFRDNSKTGAWDFSAFVRTYSLYLDERLE 31
MSDFRD + + +WD SAFVRTY+ YLD+RLE
Sbjct: 120 MSDFRDEAHSSSWDHSAFVRTYASYLDQRLE 150
>AT4G25940.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr4:13169792-13172700 REVERSE LENGTH=601
Length = 601
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 19/108 (17%)
Query: 1 MSDFRDNSKTGAWDFSAFVRTYSLYLDERLE------YKMQSRRGKRGVVAYXXXXXXXX 54
+S+F+D++ AWD SA++RTY+L+L+ERLE Y +++ R +G A
Sbjct: 122 ISNFKDDTSPLAWDCSAWIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNA 181
Query: 55 XXXXXXXXXXXIVIRSTPVRDMKLEQIFSKMQHLQLLLERFLACRPTG 102
++ R + E++ ++ LQ LL R + C+P G
Sbjct: 182 S-------------QTYRTRMLSDEELLEQLPALQQLLYRLIGCQPEG 216
>AT2G25430.1 | Symbols: | epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related | chr2:10822716-10824677 FORWARD
LENGTH=653
Length = 653
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 1 MSDFRDNSKTGAWDFSAFVRTYSLYLDERLEYKMQSRR 38
MSDFRD + + +WD SAFVRTY+ YLD+RLE + R+
Sbjct: 120 MSDFRDEAHSSSWDHSAFVRTYAGYLDQRLELALFERK 157
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 71 TPVRDMKLEQIFSKMQHLQLLLERFLACRPTGL 103
TP+R+M E+IF KM HLQ LL+RFL+ RPTGL
Sbjct: 244 TPLREMTPERIFGKMGHLQRLLDRFLSLRPTGL 276