Miyakogusa Predicted Gene
- Lj6g3v2218720.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2218720.1 tr|G7INS2|G7INS2_MEDTR RNA export OS=Medicago
truncatula GN=MTR_2g008410 PE=4 SV=1,93.25,0,WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; no
description,WD40/YVTN ,NODE_67488_length_1486_cov_30.412518.path2.1
(252 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 471 e-133
AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like supe... 168 3e-42
AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like supe... 166 2e-41
AT1G69400.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 91 5e-19
AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 75 5e-14
AT1G69400.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 70 1e-12
AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 65 3e-11
AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 53 2e-07
AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 53 2e-07
AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 53 2e-07
AT1G61210.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 49 3e-06
AT1G61210.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 49 3e-06
>AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:30320809-30323543 REVERSE LENGTH=349
Length = 349
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 211/252 (83%), Positives = 236/252 (93%)
Query: 1 MWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPER 60
MWPLLSGGQP+TVAMH+ P+ +AWIP M+LL TGSWD+T+KYWDTRQ NPVHTQQLP++
Sbjct: 98 MWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQQNPVHTQQLPDK 157
Query: 61 CYAMSVKHPLMVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAFPDQQGFLVGSI 120
CY +SVKHPLMVVGTADRN++V+NLQNPQ EFKRI SPLKYQTRC+ AFPDQQGFLVGSI
Sbjct: 158 CYTLSVKHPLMVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSI 217
Query: 121 EGRVGVHHLDDSQQGKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDS 180
EGRVGVHHLDDSQQ KNFTFKCHR+GN+IYSVNSLNFHPVH TFATAGSDGAFNFWDKDS
Sbjct: 218 EGRVGVHHLDDSQQSKNFTFKCHRDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFWDKDS 277
Query: 181 KQRLKAMLRCSQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQESEV 240
KQRLKAM RC+QPIPCS+FN+DGSI+AY+ CYDWSKGAENHNP TAK++I+LHLPQESEV
Sbjct: 278 KQRLKAMSRCNQPIPCSSFNHDGSIYAYAACYDWSKGAENHNPATAKSSIFLHLPQESEV 337
Query: 241 KGKPRIGATGRK 252
K KPR+GATGRK
Sbjct: 338 KAKPRVGATGRK 349
>AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like
superfamily protein | chr3:6805798-6808374 FORWARD
LENGTH=340
Length = 340
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 139/250 (55%), Gaps = 15/250 (6%)
Query: 8 GQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTR-----QPNPVHTQQLPERCY 62
G+ + HD V+ + + ++TGSWD+T+K WD R + V T PER Y
Sbjct: 89 GKEDILGTHDKAVRCVEYSYAAGQVITGSWDKTVKCWDPRGASGPERTQVGTYLQPERVY 148
Query: 63 AMSVKHPLMVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAFPDQQGFLVGSIEG 122
+MS+ +VV TA R++ +Y+L+N +R S LKYQTRC+ +P+ G+ + S+EG
Sbjct: 149 SMSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG 208
Query: 123 RVGVHHLDDSQ--QGKNFTFKCHREGNE----IYSVNSLNFHPVHHTFATAGSDGAFNFW 176
RV + D S+ Q K + FKCHR+ +Y VNS+ FHP++ TFAT G DG N W
Sbjct: 209 RVAMEFFDLSEAAQAKKYAFKCHRKSEAGRDIVYPVNSIAFHPIYGTFATGGCDGFVNIW 268
Query: 177 DKDSKQRLKAMLRCSQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLHLPQ 236
D ++K+RL + I +F+ DG + A + Y + +G ++ P I++
Sbjct: 269 DGNNKKRLYQYSKYPTSISALSFSRDGQLLAVASSYTFEEGEKSQEPEA----IFVRSVN 324
Query: 237 ESEVKGKPRI 246
E EVK KP++
Sbjct: 325 EIEVKPKPKV 334
>AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like
superfamily protein | chr1:18479025-18481271 FORWARD
LENGTH=339
Length = 339
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 141/253 (55%), Gaps = 15/253 (5%)
Query: 5 LSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQPNPVHTQQL-----PE 59
+ G+ + H+ PV+ + + ++TGSWD+TIK WD R + Q+ PE
Sbjct: 85 FNAGKEDVLGTHEKPVRCVEYSYAAGQVITGSWDKTIKCWDPRGASGTERTQIGTYMQPE 144
Query: 60 RCYAMSVKHPLMVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAFPDQQGFLVGS 119
R ++S+ +VV TA R++ +Y+L+N +R S LKYQTRC+ +P+ G+ + S
Sbjct: 145 RVNSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS 204
Query: 120 IEGRVGVHHLDDSQ--QGKNFTFKCHREGNE----IYSVNSLNFHPVHHTFATAGSDGAF 173
+EGRV + D S+ Q K + FKCHR+ + +Y VN++ FHP++ TFA+ G DG
Sbjct: 205 VEGRVSMEFFDLSEAAQAKKYAFKCHRKSEDGRDIVYPVNAIAFHPIYGTFASGGCDGFV 264
Query: 174 NFWDKDSKQRLKAMLRCSQPIPCSAFNNDGSIFAYSVCYDWSKGAENHNPTTAKTNIYLH 233
N WD ++K+RL + I +F+ DG + A + Y + +G + H P I++
Sbjct: 265 NIWDGNNKKRLYQYSKYPTSIAALSFSRDGGLLAVASSYTFEEGDKPHEPDA----IFVR 320
Query: 234 LPQESEVKGKPRI 246
E EVK KP++
Sbjct: 321 SVNEIEVKPKPKV 333
>AT1G69400.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:26087027-26088806 FORWARD LENGTH=314
Length = 314
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 8/222 (3%)
Query: 5 LSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQ-PNPVHTQQLPERCYA 63
L+ G T+ HD I + E +++ +D IK+WDTRQ + V +
Sbjct: 82 LNAGTVDTIGRHDDISTSIVYSYEKGEVISTGFDEKIKFWDTRQRESLVFSTDAGGAVGC 141
Query: 64 MSVKHPLMVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAFPDQQGFLVGSIEGR 123
++V +VV D ++ +Y+L+N F+ S ++ RC+ + P +G+ VGS++GR
Sbjct: 142 VTVSGNNLVV-CVDASMHIYDLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGSVDGR 200
Query: 124 VGVHHLDDSQQGK-NFTFKCH---REGN-EIYSVNSLNFHPV-HHTFATAGSDGAFNFWD 177
V V + S + ++F+CH R G + +N++ F P TF T ++G W+
Sbjct: 201 VAVDFPNTSCSSEIKYSFRCHPKSRNGRLDGVCINAIEFSPCGSGTFVTGDNEGYVISWN 260
Query: 178 KDSKQRLKAMLRCSQPIPCSAFNNDGSIFAYSVCYDWSKGAE 219
S++RL + R S I AF++ G + A + + + E
Sbjct: 261 AKSRRRLNELPRYSNSIASLAFDHTGELLAIASSHTYQDAKE 302
>AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:5453245-5454088 REVERSE LENGTH=140
Length = 140
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/42 (78%), Positives = 36/42 (85%)
Query: 1 MWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIK 42
MWPLLSG QP TVAMHDAP IAWIP M+LLVTGSWD+T+K
Sbjct: 99 MWPLLSGAQPSTVAMHDAPFNQIAWIPGMNLLVTGSWDKTLK 140
>AT1G69400.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:26087027-26088422 FORWARD LENGTH=272
Length = 272
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 5 LSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQ-PNPVHTQQLPERCYA 63
L+ G T+ HD I + E +++ +D IK+WDTRQ + V +
Sbjct: 82 LNAGTVDTIGRHDDISTSIVYSYEKGEVISTGFDEKIKFWDTRQRESLVFSTDAGGAVGC 141
Query: 64 MSVKHPLMVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAFPDQQGFLVGSIEGR 123
++V +VV D ++ +Y+L+N F+ S ++ RC+ + P +G+ VGS++GR
Sbjct: 142 VTVSGNNLVV-CVDASMHIYDLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGSVDGR 200
Query: 124 VGVHHLDDSQQGK-NFTFKCH---REGN-EIYSVNSLNFHP-----VHH 162
V V + S + ++F+CH R G + +N++ F P +HH
Sbjct: 201 VAVDFPNTSCSSEIKYSFRCHPKSRNGRLDGVCINAIEFSPWYMSLIHH 249
>AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:3733406-3739363 FORWARD LENGTH=1021
Length = 1021
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 22/214 (10%)
Query: 1 MWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQPNPVHT-QQLPE 59
+W + PM++ H +PV +A+ E L++ G+ IK WD + V
Sbjct: 42 LWSIGKTTSPMSLCGHTSPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRS 101
Query: 60 RCYAMSVKHP---LMVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAF---PDQQ 113
C A+ HP + G++D N+ V++ + K I K TR ++ PD +
Sbjct: 102 NCSAVEF-HPFGEFLASGSSDTNLRVWDTRK-----KGCIQTYKGHTRGISTIEFSPDGR 155
Query: 114 GFLVGSIEGRVGVHHLDDSQQGKNF-TFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGA 172
+ G ++ V V L GK FKCH EG + SL+FHP+ AT +D
Sbjct: 156 WVVSGGLDNVVKVWDL---TAGKLLHEFKCH-EG----PIRSLDFHPLEFLLATGSADRT 207
Query: 173 FNFWDKDSKQRLKAMLRCSQPIPCSAFNNDGSIF 206
FWD ++ + + + + AF+ DG
Sbjct: 208 VKFWDLETFELIGTTRPEATGVRAIAFHPDGQTL 241
>AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=836
Length = 836
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 22/211 (10%)
Query: 1 MWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPER 60
+W + +++ H + + + + L+ G+ TIK WD + V T R
Sbjct: 43 LWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHR 101
Query: 61 CYAMSVK-HPL---MVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAF---PDQQ 113
+SV HP G+ D N+ +++++ K I K TR + PD +
Sbjct: 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRK-----KGCIHTYKGHTRGVNVLRFTPDGR 156
Query: 114 GFLVGSIEGRVGVHHLDDSQQGKNFT-FKCHREGNEIYSVNSLNFHPVHHTFATAGSDGA 172
+ G + V V L GK T FK H EG + SL+FHP AT +D
Sbjct: 157 WVVSGGEDNIVKVWDL---TAGKLLTEFKSH-EGQ----IQSLDFHPHEFLLATGSADRT 208
Query: 173 FNFWDKDSKQRLKAMLRCSQPIPCSAFNNDG 203
FWD ++ + + + + + C +FN DG
Sbjct: 209 VKFWDLETFELIGSGGPETAGVRCLSFNPDG 239
>AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=837
Length = 837
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 22/211 (10%)
Query: 1 MWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPER 60
+W + +++ H + + + + L+ G+ TIK WD + V T R
Sbjct: 43 LWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHR 101
Query: 61 CYAMSVK-HPL---MVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAF---PDQQ 113
+SV HP G+ D N+ +++++ K I K TR + PD +
Sbjct: 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRK-----KGCIHTYKGHTRGVNVLRFTPDGR 156
Query: 114 GFLVGSIEGRVGVHHLDDSQQGKNFT-FKCHREGNEIYSVNSLNFHPVHHTFATAGSDGA 172
+ G + V V L GK T FK H EG + SL+FHP AT +D
Sbjct: 157 WVVSGGEDNIVKVWDL---TAGKLLTEFKSH-EGQ----IQSLDFHPHEFLLATGSADRT 208
Query: 173 FNFWDKDSKQRLKAMLRCSQPIPCSAFNNDG 203
FWD ++ + + + + + C +FN DG
Sbjct: 209 VKFWDLETFELIGSGGPETAGVRCLSFNPDG 239
>AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:2701448-2706910 FORWARD LENGTH=839
Length = 839
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 1 MWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQPNPVHTQQLPER 60
+W + +++ H + + + + L+ G+ TIK WD + V T R
Sbjct: 43 LWAIGKPNAILSLYGHSSGIDSVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLT-GHR 101
Query: 61 CYAMSVK-HPL---MVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAF---PDQQ 113
+SV HP G+ D N+ +++++ K I K TR + PD +
Sbjct: 102 SNCVSVNFHPFGEFFASGSLDTNLKIWDIRK-----KGCIHTYKGHTRGVNVLRFTPDGR 156
Query: 114 GFLVGSIEGRVGVHHLDDSQQGKNF-TFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGA 172
+ G + V V L GK FK H EG + SL+FHP AT +D
Sbjct: 157 WIVSGGEDNVVKVWDL---TAGKLLHEFKSH-EGK----IQSLDFHPHEFLLATGSADKT 208
Query: 173 FNFWDKDSKQRLKAMLRCSQPIPCSAFNNDG 203
FWD ++ + + + + + C FN DG
Sbjct: 209 VKFWDLETFELIGSGGTETTGVRCLTFNPDG 239
>AT1G61210.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:22564785-22571555 FORWARD LENGTH=1179
Length = 1179
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 33/233 (14%)
Query: 1 MWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQPNPVHT-QQLPE 59
+W + M++ H + V +A+ L++ G+ IK WD + V
Sbjct: 42 LWAIGKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRS 101
Query: 60 RCYAMSVKHPL---MVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAF---PDQQ 113
C A+ HP + G++D N+ +++++ K I K +R ++ PD +
Sbjct: 102 NCSAVEF-HPFGEFLASGSSDANLKIWDIRK-----KGCIQTYKGHSRGISTIRFTPDGR 155
Query: 114 GFLVGSIEGRVGVHHLDDSQQGKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAF 173
+ G ++ V V L + F F EG + SL+FHP+ AT +D
Sbjct: 156 WVVSGGLDNVVKVWDLTAGKLLHEFKF---HEG----PIRSLDFHPLEFLLATGSADRTV 208
Query: 174 NFWDKDSKQRLKAMLRCSQPIPCSAFNNDG---------SIFAYS----VCYD 213
FWD ++ + + + + + F+ DG S+ YS VC+D
Sbjct: 209 KFWDLETFELIGSTRPEATGVRSIKFHPDGRTLFCGLDDSLKVYSWEPVVCHD 261
>AT1G61210.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:22564785-22571555 FORWARD LENGTH=1181
Length = 1181
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 33/233 (14%)
Query: 1 MWPLLSGGQPMTVAMHDAPVKDIAWIPEMSLLVTGSWDRTIKYWDTRQPNPVHT-QQLPE 59
+W + M++ H + V +A+ L++ G+ IK WD + V
Sbjct: 42 LWAIGKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRS 101
Query: 60 RCYAMSVKHPL---MVVGTADRNILVYNLQNPQVEFKRIISPLKYQTRCLAAF---PDQQ 113
C A+ HP + G++D N+ +++++ K I K +R ++ PD +
Sbjct: 102 NCSAVEF-HPFGEFLASGSSDANLKIWDIRK-----KGCIQTYKGHSRGISTIRFTPDGR 155
Query: 114 GFLVGSIEGRVGVHHLDDSQQGKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAF 173
+ G ++ V V L + F F EG + SL+FHP+ AT +D
Sbjct: 156 WVVSGGLDNVVKVWDLTAGKLLHEFKF---HEG----PIRSLDFHPLEFLLATGSADRTV 208
Query: 174 NFWDKDSKQRLKAMLRCSQPIPCSAFNNDG---------SIFAYS----VCYD 213
FWD ++ + + + + + F+ DG S+ YS VC+D
Sbjct: 209 KFWDLETFELIGSTRPEATGVRSIKFHPDGRTLFCGLDDSLKVYSWEPVVCHD 261