Miyakogusa Predicted Gene

Lj6g3v2218160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2218160.1 Non Chatacterized Hit- tr|F4KDK4|F4KDK4_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At5,38.32,1e-18,seg,NULL,CUFF.60826.1
         (251 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64230.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    80   1e-15
AT3G19920.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    64   1e-10

>AT5G64230.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 9 plant structures; EXPRESSED
           DURING: 4 anthesis, petal differentiation and expansion
           stage; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT3G19920.1); Has 35333 Blast hits
           to 34131 proteins in 2444 species: Archae - 798;
           Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
           531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
           BLink). | chr5:25692572-25693909 FORWARD LENGTH=379
          Length = 379

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 54/70 (77%)

Query: 103 DTAIGRALSQLLSALNDIPVSSRKYQVVRSLAESIIDDNHQGGVHALREVNRGVMSAAFV 162
           ++ IGRA+ QLLSA+N+IPVSSRKYQVVRSLAE +I+DN      AL ++NR V++A+F 
Sbjct: 95  ESGIGRAIWQLLSAMNEIPVSSRKYQVVRSLAERLINDNQGENSVALLDLNRRVLNASFR 154

Query: 163 RTMKQLEATV 172
            T+ +LE  V
Sbjct: 155 TTLSRLETAV 164


>AT3G19920.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G64230.1); Has 217 Blast hits to 217 proteins
           in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0;
           Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr3:6929840-6931771 REVERSE
           LENGTH=416
          Length = 416

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 45/65 (69%)

Query: 105 AIGRALSQLLSALNDIPVSSRKYQVVRSLAESIIDDNHQGGVHALREVNRGVMSAAFVRT 164
           ++GRAL   L+ +N+IPV+SRKYQ    +AE I++DN Q G   L +VNR  ++++F RT
Sbjct: 117 SLGRALCHALALMNEIPVTSRKYQFAMGMAEKIMEDNAQSGHVDLLDVNRAALASSFART 176

Query: 165 MKQLE 169
             +L+
Sbjct: 177 TARLQ 181