Miyakogusa Predicted Gene

Lj6g3v2218130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2218130.1 Non Chatacterized Hit- tr|I3S2J2|I3S2J2_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,56.92,0.00000000006,seg,NULL; no description,NULL;
Peptidase_C14,Peptidase C14, caspase catalytic,CUFF.60825.1
         (190 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25110.1 | Symbols: AtMC2, MC2 | metacaspase 2 | chr4:1288773...    49   2e-06
AT4G25110.2 | Symbols: AtMC2, MC2 | metacaspase 2 | chr4:1288773...    49   2e-06
AT1G02170.1 | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metaca...    48   4e-06

>AT4G25110.1 | Symbols: AtMC2, MC2 | metacaspase 2 |
           chr4:12887738-12889953 REVERSE LENGTH=418
          Length = 418

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 95  YGHKRAVLFGIHYGNTAAPRLKGSVNNAQCMKDFLINKLSFPSNSIWMFT 144
           +G KRAV+ G+ Y NT    LKG +N+A CMK  L+ +  FP + I M T
Sbjct: 113 HGQKRAVIVGVSYKNTKD-ELKGCINDANCMKFMLMKRFQFPESCILMLT 161


>AT4G25110.2 | Symbols: AtMC2, MC2 | metacaspase 2 |
           chr4:12887738-12889953 REVERSE LENGTH=417
          Length = 417

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 95  YGHKRAVLFGIHYGNTAAPRLKGSVNNAQCMKDFLINKLSFPSNSIWMFT 144
           +G KRAV+ G+ Y NT    LKG +N+A CMK  L+ +  FP + I M T
Sbjct: 113 HGQKRAVIVGVSYKNTKD-ELKGCINDANCMKFMLMKRFQFPESCILMLT 161


>AT1G02170.1 | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 |
           metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367
          Length = 367

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 95  YGHKRAVLFGIHYGNTAAPRLKGSVNNAQCMKDFLINKLSFPSNSIWMFT 144
           +G KRAV+ GI Y   +   LKG +N+A+CM+  LINK  F  +SI M T
Sbjct: 77  HGRKRAVICGISY-RFSRHELKGCINDAKCMRHLLINKFKFSPDSILMLT 125