Miyakogusa Predicted Gene

Lj6g3v2204780.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2204780.1 tr|G7IPK2|G7IPK2_MEDTR Splicing factor 3B subunit
OS=Medicago truncatula GN=MTR_2g009110 PE=4 SV=1,92.95,0,no
description,Armadillo-like helical; ARM repeat,Armadillo-type fold;
SPLICING FACTOR 3B, SUBUNIT 1,CUFF.60807.1
         (1187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64270.1 | Symbols:  | splicing factor, putative | chr5:25706...  1932   0.0  

>AT5G64270.1 | Symbols:  | splicing factor, putative |
            chr5:25706909-25710718 FORWARD LENGTH=1269
          Length = 1269

 Score = 1932 bits (5004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 965/1189 (81%), Positives = 1021/1189 (85%), Gaps = 16/1189 (1%)

Query: 8    DADLGFRKSQRIIDREDDYRQRRLNRIISPERHDPFAAGEKTPDPSVRTYAEIMQXXXXX 67
            D D+GF+  Q I +RE +YR RRLNR++SP+R D FA G+KTPD SVRTY + M+     
Sbjct: 88   DDDVGFKPRQSIAEREGEYRNRRLNRVLSPDRVDAFAMGDKTPDASVRTYTDHMRETALQ 147

Query: 68   XXXXXXXXXIANXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKRRNRWDMSQEDGAAKKAK 127
                     IA                              KRR+RWD+ +EDGAA K  
Sbjct: 148  REKEETMRLIAKKKKEEEEAAAKHQKDSAPPPPASSSSSSSKRRHRWDLPEEDGAAAKKA 207

Query: 128  ---TSDWE-DETTPG--RWDATPTPGRVIDATP--GRRNRWDETPTPGRLVDSDXXXXXX 179
               +SDW+  +  PG  RWDA PTPGRV DATP  GRRNRWDETPTPGR+ DSD      
Sbjct: 208  KAASSDWDLPDAAPGIGRWDA-PTPGRVSDATPSAGRRNRWDETPTPGRVTDSDATPGGG 266

Query: 180  XXXXXXXXXMAWDATPKLAGMATPTPKRQRSRWDETPATMGSXXXXXXXXXXXXXXXXXX 239
                     + WD      G+ATPTPKRQRSRWDETPATMGS                  
Sbjct: 267  VTPGATPSGVTWD------GLATPTPKRQRSRWDETPATMGSATPMGGVTPGAAYTPGVT 320

Query: 240  XXGGIELATPTPGQL-HGGAITPEQYNLLRWERDIEERNRPLTDEELDAMFPMEGYKVLD 298
              GGI++ATPTPGQL   G +TPEQ N+ RWE+DIEERNRPL+DEELDAMFP +GYKVLD
Sbjct: 321  PIGGIDMATPTPGQLIFRGPMTPEQLNMQRWEKDIEERNRPLSDEELDAMFPKDGYKVLD 380

Query: 299  PPASYVPIRTPARKLLATPTPLGTPGFHIPEENPLQRYDIPKELPGGLPFMKPEDYQYFG 358
            PPA+YVPIRTPARKL  TPTP+ TPG+ IPEEN  Q+YD+P E+PGGLPFMKPEDYQYFG
Sbjct: 381  PPATYVPIRTPARKLQQTPTPMATPGYVIPEENRGQQYDVPPEVPGGLPFMKPEDYQYFG 440

Query: 359  XXXXXXXXXXXXXXXQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRIL 418
                           QKERKIMKLLLKVKNGTPPQRKTALRQLTDKARE GAGPLFN+IL
Sbjct: 441  SLLNEENEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKARELGAGPLFNKIL 500

Query: 419  PLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREI 478
            PLLMQPTLEDQERHLLVKVIDR+LYKLDE+VRPYVHKILVVIEPLLIDEDYYARVEGREI
Sbjct: 501  PLLMQPTLEDQERHLLVKVIDRILYKLDEMVRPYVHKILVVIEPLLIDEDYYARVEGREI 560

Query: 479  ISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKK 538
            ISNLSKAAGLA+MIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSK+
Sbjct: 561  ISNLSKAAGLASMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKR 620

Query: 539  SWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITXXXXXXXXXXX 598
            SWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGL+DENQKVRTIT           
Sbjct: 621  SWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSDENQKVRTITALSLAALAEAA 680

Query: 599  XPYGIESFDSVLKPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYASYYTKEVMLILIRE 658
             PYGIESFDSVLKPLWKGIR HRGKVLAAFLKAIGFIIPLM+A+YASYYTKEVM+ILIRE
Sbjct: 681  APYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIYASYYTKEVMVILIRE 740

Query: 659  FQSPDEEMKKIVLKVVKQCVSTEGVEADYIRTDILPEFFRNFWVRRMALDRRNYKQLVET 718
            FQSPDEEMKKIVLKVVKQCVSTEGVE +YIR+DILPEFFRNFW R+MAL+RRNYKQLVET
Sbjct: 741  FQSPDEEMKKIVLKVVKQCVSTEGVEPEYIRSDILPEFFRNFWTRKMALERRNYKQLVET 800

Query: 719  TVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGSSDIDARLEELLIDGI 778
            TVE+ANKVGVADIVGR+VEDLKDESE YRRMVMETI+KVVTNLG+SDIDARLEELLIDGI
Sbjct: 801  TVEVANKVGVADIVGRVVEDLKDESEQYRRMVMETIDKVVTNLGASDIDARLEELLIDGI 860

Query: 779  LYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLI 838
            LYAFQEQTSDDANVMLNGFGAVVN+LGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLI
Sbjct: 861  LYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLI 920

Query: 839  SRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKD 898
            SRIAVVMKQC EEQLMGHLGVVLYEYLGEEYPEVLGSILGALK+IVNVIGMTKMTPPIKD
Sbjct: 921  SRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKD 980

Query: 899  LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRR 958
            LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRR
Sbjct: 981  LLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRR 1040

Query: 959  ATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE 1018
            ATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE
Sbjct: 1041 ATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE 1100

Query: 1019 YRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHM 1078
            YRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHM
Sbjct: 1101 YRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHM 1160

Query: 1079 ALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLF 1138
            ALGVAGLGCEDALVHLLN++WPNIFETSPHVINAVMEAIEGMRVALGAAV+LNYCLQGLF
Sbjct: 1161 ALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMRVALGAAVILNYCLQGLF 1220

Query: 1139 HPARKVREVYWKIYNSLYIGAQDALVAAYPALEDEHSNVYSRPELMMFI 1187
            HPARKVREVYWKIYNSLYIGAQD LVAAYP LEDE +NVYSRPEL MF+
Sbjct: 1221 HPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRPELTMFV 1269