Miyakogusa Predicted Gene

Lj6g3v2193660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2193660.1 Non Chatacterized Hit- tr|F6HLD3|F6HLD3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,73.02,4.2039e-45,Pseudouridine synthase,Pseudouridine synthase,
catalytic domain; DKCLD,Dyskerin-like; CENTROMERE/MIC,CUFF.60886.1
         (581 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57150.1 | Symbols: NAP57, AtNAP57, CBF5, AtCBF5 | homologue ...   711   0.0  
AT5G14460.1 | Symbols:  | Pseudouridine synthase family protein ...   104   1e-22

>AT3G57150.1 | Symbols: NAP57, AtNAP57, CBF5, AtCBF5 | homologue of
           NAP57 | chr3:21154255-21155952 REVERSE LENGTH=565
          Length = 565

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/419 (84%), Positives = 383/419 (91%), Gaps = 12/419 (2%)

Query: 1   MSLSETKKKKHRSATKTHDGAATTEDDHHTKDEPQFMIKPEKLTPTIDTSQWPILLKNYD 60
           + +S +KKKK     KT + AA T D         +MIKP+  TP IDTSQWPILLKNYD
Sbjct: 4   VDISHSKKKKQ---DKTENDAADTGD---------YMIKPQSFTPAIDTSQWPILLKNYD 51

Query: 61  RLNVRTGHYTPLPSGYSPLKRPLPEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGH 120
           RLNVRTGHYTP+ +G+SPLKRPL EY++YGV+NLDKPANPSSHEVVAWIKR+LRVEKTGH
Sbjct: 52  RLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGH 111

Query: 121 SGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSDVPDVSKVARALETLTGAV 180
           SGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHS VPDV+KVARALE+LTGAV
Sbjct: 112 SGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAV 171

Query: 181 FQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLVLGVG 240
           FQRPPLISAVKRQLRIRTIYESKLLEYD DRHLVVFW+SCEAGTY+RTMCVHLGL+LGVG
Sbjct: 172 FQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVG 231

Query: 241 AHMQELRRVRSGIMGEKDNMVTMHDVIDAQWVFDNYRDESYLRRVVMPLEVLLTSYKRLV 300
            HMQELRRVRSGI+GE +NMVTMHDV+DAQ+V+DN RDESYLRRV+MPLE++LTSYKRLV
Sbjct: 232 GHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLV 291

Query: 301 VKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDH 360
           VKDSAVNAICYGAKLMIPGLLRFENDI+ G EVVLMTTKGEAIA+GIAEMTT+VMATCDH
Sbjct: 292 VKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDH 351

Query: 361 GVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNLVLP 419
           GVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIA GKLDKHGKPNE TP EW RN+VLP
Sbjct: 352 GVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLP 410


>AT5G14460.1 | Symbols:  | Pseudouridine synthase family protein |
           chr5:4660239-4662543 REVERSE LENGTH=540
          Length = 540

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 34/192 (17%)

Query: 91  VLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 150
           VL ++KP   +S  V   ++RL++V+K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 151 KEYVCIAR-------LHSDVPDVSK----------VARALETLTGAVFQRPPLISAVK-- 191
           K Y  + R       L +D P + +          + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 192 ------RQLRIRTIYES----KLLEYD-----PDRHLVVFWISCEAGTYVRTMCVHLGLV 236
                 +  R  T+  S     + ++D      DR  ++F + C  GTY+R++C  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

Query: 237 LGVGAHMQELRR 248
           LG  AH+  LRR
Sbjct: 503 LGSCAHLTALRR 514