Miyakogusa Predicted Gene

Lj6g3v2193440.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2193440.1 Non Chatacterized Hit- tr|Q2HVA4|Q2HVA4_MEDTR
Centromere protein, putative OS=Medicago truncatula GN,67.28,0,BHLH
FAMILY PROTEIN,NULL; STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY
MEMBER,NULL; seg,NULL; Pr,CUFF.60866.1
         (918 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38070.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   282   6e-76

>AT4G38070.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:17876535-17882569 FORWARD
           LENGTH=1513
          Length = 1513

 Score =  282 bits (722), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 178/473 (37%), Positives = 280/473 (59%), Gaps = 8/473 (1%)

Query: 9   ELEDVRAEVEKLRAECRAKTKLLESLKKDRGEEIVKFQEATKLAEKHARELDRKSEEIQE 68
           EL++V+A  EKLR + R KT+LLE+LKK + E++++ +EA  + EKH  E++ KS EI E
Sbjct: 7   ELDEVKAVNEKLRIDYRNKTELLENLKKVQNEQLIEIREARLVNEKHGFEIEEKSREIAE 66

Query: 69  LRKIQEDLKCDLQEKEACIAHLSSENRKIQGNCAERLVTLEGSNRKMVVALDELTARNND 128
           L++  E+L+  L+EK++ +  ++  N K++ N  ++    E   R M+  LDE + +N D
Sbjct: 67  LKRANEELQRCLREKDSVVKRVNDVNDKLRANGEDKYREFEEEKRNMMSGLDEASEKNID 126

Query: 129 LEQNACASSGEISRXXXXXXXXXXXXXXXXXXXRQAVILRRREDVILQLEEENMSVQDKI 188
           LEQ       EI                     +    +R R+DV++++EEE   V++K+
Sbjct: 127 LEQKNNVYRAEIEGLKGLLAVAETKRIEAEKTVKGMKEMRGRDDVVVKMEEEKSQVEEKL 186

Query: 189 KWRNEQFKHLEEAHEQLQVQFQXXXXXXXXXXXALLDEMSSLQTSLDSQTRTLEGLQSRL 248
           KW+ EQFKHLEEA+E+L+  F+            LLDE+ SLQT LDS TR  E LQ +L
Sbjct: 187 KWKKEQFKHLEEAYEKLKNLFKDSKKEWEEEKSKLLDEIYSLQTKLDSVTRISEDLQKKL 246

Query: 249 EMCNHALAHEESKRKLMEAEIRELKTCFDDVYSQCEEKKTEVQELTAMRNDEIASLRNSL 308
           +MCN AL  EE++RK +E ++ E K  ++D +++C++ +T++ +L   R+ E+A LR +L
Sbjct: 247 QMCNGALTQEETRRKHLEIQVSEFKAKYEDAFAECQDARTQLDDLAGKRDWEVAELRQTL 306

Query: 309 GEKEMLVRELERKIVLLEQDNQELGDSVKELREAQIQNGGANSLTSKLRNKLRRLEETHK 368
             K+   +E++ +   LEQ+N+EL  S+KEL+EA IQ G  NS  SKL+NK R LE  HK
Sbjct: 307 SMKDAYFKEMKYENGKLEQENRELLGSLKELQEATIQ-GSGNSALSKLKNKFRNLENIHK 365

Query: 369 GCSSILKSKESQWDSQVAKMEADIIAYKSTLTNKEQEIRELQMELETCYHAIADNHME-- 426
            CS+ L+SKE++W SQV KM  +I  YK  L +KE  ++E+++ELE C  + A   ++  
Sbjct: 366 NCSANLRSKEAEWSSQVEKMVEEINDYKLQLQSKEAALKEVELELENCRSSTAKMRLQYE 425

Query: 427 -----LLIFKSELAEAHSKSFTAETENAVRFKEKENMILFSTEQLRVKDNSLT 474
                 L+    ++EA S+   A+ +     K + N      EQL  K+ +L 
Sbjct: 426 EISIMFLVLSRTVSEAQSRLANAKDKQIKDEKREGNCYSLLMEQLDQKNAALA 478



 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 181/373 (48%), Gaps = 40/373 (10%)

Query: 493  MLEESSAGQLILKEQLLQMESTLQHXXXXXXXXXXXXXXXXXNKNDELSRLDCEAQSWKS 552
            MLEES+  QL+L+E+++ +E+  +                  +K  E+ +++ +   WKS
Sbjct: 672  MLEESTKTQLLLQEKVVDVENDSKRKLADVSEALEIANSELSDKTSEVFQIEFQLWVWKS 731

Query: 553  TAETLRGSYEEIQGSCEKMETSLQSQIENEQALKQENENLLCIVKDKDRKIEDLQRQISS 612
             A+ L+   E+ Q   +++E SL  Q+   +A+KQE   L                 +  
Sbjct: 732  IAKRLKAELEQNQNLRKRVEASLLEQVGVGEAIKQEKNEL-----------------VHK 774

Query: 613  LELCNAEIMKEAEKCKQEKDGLVQIALEKDCCIKDLQKDIAIADLKQESLKEKLEDAIVA 672
            L++ +     ++EK    K+ L++   +KD  ++ LQ+++ +  L+Q+SL+ +LED ++A
Sbjct: 775  LKVISHARSSDSEK----KESLMR---DKDEMLESLQREVEL--LEQDSLRRELEDVVLA 825

Query: 673  KMXXXXXXXXXXXXXXXXXXXNQTLKHFQKLATTMEHDLSDAMYFSFSNQVEKLVEVSAL 732
             M                      L+   +    ++H+L  ++        +K  EV+ L
Sbjct: 826  HMIGERELQNEREIC--------ALQQKDQDLCEVKHELEGSLKSVSLLLQQKQNEVNML 877

Query: 733  N---EALKNAEYLTKLEIEEKNMRIVKSELEINSLLDNLAHTKESFFHLKHEAEQLQTSL 789
                E L   + LT +E E K M I++ E EI+SL   L  + ES    + EA + +  L
Sbjct: 878  RKTWEKLTARQILTAVETESKKMMIIELEGEISSLSQKLETSNESVSCFRQEATKSRAEL 937

Query: 790  EAMKFETEKLTDKQQTMEYMITELNSEKESLLQDIKKLSGEREGMLAYIEDLCDRIGELS 849
            E  + E +++T + Q  E + T   +EK  L++++  LS E+  +L++I ++ D + +L 
Sbjct: 938  ETKQTELKEVTTQMQ--EKLRTS-EAEKTELVKEVASLSTEKRNLLSFISEMEDGMLKLY 994

Query: 850  SGDMQLMERLGKI 862
             GD +LM+ L ++
Sbjct: 995  DGDTKLMKTLERV 1007