Miyakogusa Predicted Gene

Lj6g3v2192220.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2192220.1 Non Chatacterized Hit- tr|B7FLG4|B7FLG4_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,74.73,0,no
description,WD40/YVTN repeat-like-containing domain; WD40
repeat-like,WD40-repeat-containing doma,CUFF.60771.1
         (368 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14050.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   371   e-103

>AT5G14050.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:4533539-4535179 FORWARD LENGTH=546
          Length = 546

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/317 (63%), Positives = 231/317 (72%), Gaps = 19/317 (5%)

Query: 54  EMRKLESFLFGSLYSPLESGKEVDGEVEPSDLFFTDRSA-----DSVLSVCXXXXXXXXX 108
           EM+KLE+ +FGSLYSP+  GKE   E + S LF  DRSA     D               
Sbjct: 59  EMKKLENLIFGSLYSPVTFGKEE--EEDGSALFHVDRSAVRQIPDYEDDGDDDEELSDEE 116

Query: 109 XXXXXXXXXRKPAWVDEEEEKFTVNIAKVNRLRKLRKDEDESFISGSEYVARLRAHHVKL 168
                     + AW DEEE++  V+IA VNRLRKLRK+E+E  ISGSEY+ARLRAHH KL
Sbjct: 117 NGQVVAIRKGEAAWEDEEEKQINVDIASVNRLRKLRKEENEGLISGSEYIARLRAHHAKL 176

Query: 169 NRGTDWAQLDSRLKLDRSDYDGELTDDENEAVVRRGYENVDDILRTNEDLVANS-SSKLL 227
           N GTDWA+ DS++       DGE +DD++    + G   VDDILRTNEDLV  S  +KL 
Sbjct: 177 NPGTDWARPDSQI------VDGESSDDDD---TQDG--GVDDILRTNEDLVVKSRGNKLC 225

Query: 228 PGHLEYSRLVDANIQDPSNGPVNSVQFHRNAQLLLTAGLDQKLRFFQIDGKRNTKIQSIF 287
            G LEYS+LVDAN  DPSNGP+NSV FH+NAQLLLTAGLD++LRFFQIDGKRNTKIQSIF
Sbjct: 226 AGRLEYSKLVDANAADPSNGPINSVHFHQNAQLLLTAGLDRRLRFFQIDGKRNTKIQSIF 285

Query: 288 LEDCPIRKASFLPDGSQVILSGRRKFFYSFDLVKGTLEKIGPLVGREEKSLEVFELSSDS 347
           LEDCPIRKA+FLP+GSQVI+SGRRKFFYSFDL K   +KIGPLVGREEKSLE FE+S DS
Sbjct: 286 LEDCPIRKAAFLPNGSQVIVSGRRKFFYSFDLEKAKFDKIGPLVGREEKSLEYFEVSQDS 345

Query: 348 QMIAFVGNEGYILLVSV 364
             IAFVGNEGYILLVS 
Sbjct: 346 NTIAFVGNEGYILLVST 362