Miyakogusa Predicted Gene

Lj6g3v2192080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2192080.1 Non Chatacterized Hit- tr|I1M2K6|I1M2K6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19244
PE,80.3,0,seg,NULL; PREDICTED: HYPOTHETICAL PROTEIN, PARTIAL,NULL; DNA
POLYMERASE V RELATED,DNA polymerase V; ,CUFF.60755.1
         (1260 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64420.1 | Symbols:  | DNA polymerase V family | chr5:2575641...  1157   0.0  

>AT5G64420.1 | Symbols:  | DNA polymerase V family |
            chr5:25756416-25761122 FORWARD LENGTH=1306
          Length = 1306

 Score = 1157 bits (2994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1261 (51%), Positives = 806/1261 (63%), Gaps = 55/1261 (4%)

Query: 33   ALPSSTKPMESKKKRKALDKERRRATA-------GEVVPEPKPVA-------AADSPSTS 78
             + SS K ME KK RKA DK+RR   A       G   P+P PVA       A D    S
Sbjct: 55   GVASSGKDMEKKKMRKASDKQRRLEAALKKNNGVGASRPKPIPVAVNSNSDEADDESLPS 114

Query: 79   GGSAAPEFHIGVFKDLAVANETMREAAAKQMVRELKEVQNAYDGLGESEKEEGDGGFKLE 138
              +++    +  F DLA ++ ++REAAA+ +V  L+E+Q  Y+ L   +KE  DGG  LE
Sbjct: 115  AAASSSSLPLNYFTDLASSDASVREAAAESLVLRLQEIQKQYEML--PDKESVDGGLMLE 172

Query: 139  AEKDDGLENCAASVRYAVRRLIRGVSSSRECARPGFALGLAALVGSIHNIRVESFLKLVV 198
            AEK+DGL+NCA  +RYA+RRLIRGVSSSRECAR GFALGL   V  I +I VES L L+ 
Sbjct: 173  AEKNDGLDNCAPHLRYALRRLIRGVSSSRECARQGFALGLTLPVSVISSINVESLLNLIA 232

Query: 199  DLLEVTSSMKGQEAKDSLLGRLFAYGALARSGRLEHEYSSDKNTSSIKEFISALISLANR 258
            D L V+SSM GQ+ K+ LLGRLFAYGALARSGRL  ++ SDK++  IKEF +ALI LA +
Sbjct: 233  DSLSVSSSMTGQDIKECLLGRLFAYGALARSGRLIEDWQSDKDSPIIKEFTNALIGLAAK 292

Query: 259  KRYLQDPAVSIILDLVEKLPVEALVNHVMEAPGLQEWFEAAVEVGNPDALLLALKVREKI 318
            KRYLQ+PAV I+LD V+KLP E +V HVMEAP L +WFE A EVGNPDALLLALK+ EK+
Sbjct: 293  KRYLQEPAVHILLDFVDKLPTEPVVTHVMEAPELYKWFEQATEVGNPDALLLALKLHEKV 352

Query: 319  SIDSSRFGKLLPNPFSSSQLFSADHLSSLSNCLKESTFCQPRVHGVWPALINILLPNVSQ 378
            S+D   F KLLP PFSS + FSADHL+++ NCLKESTFCQPRVH +WP ++++LLP    
Sbjct: 353  SVDHPIFSKLLPVPFSSGKFFSADHLTAIGNCLKESTFCQPRVHSLWPVIVDMLLPEAVV 412

Query: 379  LEDXXXXXXXXXXXXXXXXXXX-XDEEIVKSLQSFCEIIIEGSLLFSSHXXXXXXXXXXX 437
              +                     +EE   ++++FCE+ +EG LL S+H           
Sbjct: 413  QSEDVVSVSSSSKKQKRNRKSNPVEEEATNNIRNFCEVFMEGDLLSSTHVRKHLAFDILL 472

Query: 438  XXXXXXXXXXXXXXXXXXXXQCLMDVLSTKSSWLYKIAQHFLKQLSXXXXXXXXXXXXXX 497
                                QCLMD+LSTK SWL+K+A HFL +L               
Sbjct: 473  LLLPKLPASFIQHVLSLKFVQCLMDILSTKDSWLHKVATHFLVELMDWVKDDDTKRVAVT 532

Query: 498  XXLQKHSNGKFDLITQTKMVKDLMSQFKTEPGCMLFIQNLMNIFVDEGNALEEP------ 551
              LQKHS GKFD IT+TK VK L ++ +TE GC L++QNLMN+FVDE +  EE       
Sbjct: 533  MALQKHSEGKFDNITRTKTVKVLAAELETEDGCTLYLQNLMNLFVDEQHVPEESSNMKWS 592

Query: 552  -------SDQSQTTDENSEIGSVEDKDS---PMSSDFLKSWIIESLPSILKCLKLDHEEK 601
                   SDQSQTTD+NS+ GS E+KDS     +SD LKSW+IESLP ILK  KL  E K
Sbjct: 593  LEPCSLNSDQSQTTDDNSDNGSNEEKDSVGTTGNSDVLKSWVIESLPGILKHAKLSPEAK 652

Query: 602  FRVQKEIMKFLAVQGLFTASLGTEVTSFELQEKFRWPKSPTSIALCKMCIXXXXXXXXXX 661
             R+QK+I+KFLAVQGLF ASLGTEVTSFELQEKF+WPK+ T  ALC+MCI          
Sbjct: 653  LRLQKQILKFLAVQGLFLASLGTEVTSFELQEKFKWPKTATPAALCQMCIEQLQLLLSNS 712

Query: 662  XKGEGSRPLANSLE-PNDLGSYFMKFFGTLCNIPSVSLFRSLDDEDEKAMKNLQAMETRL 720
             K E      N+LE P+D  SYFMKF  TL NIPSVSLFRSL++ DEKA K LQ  E++L
Sbjct: 713  QKIEKPLSKGNALEQPDDPVSYFMKFLSTLQNIPSVSLFRSLNEADEKAFKELQETESKL 772

Query: 721  SKEERXXXXXXDPNKXXXXXXXXXXXXXXXXXHPGEYSEAASELVICFKKTFSS-DLPES 779
             KEER      DPNK                 HPGE+SEAA+EL +C  K FSS DL +S
Sbjct: 773  LKEERNCGLSTDPNKFHALRHLVVQLLLQILLHPGEFSEAATELSVCCDKAFSSLDLLKS 832

Query: 780  SGEDDLEVDDAPELMDVLVDTLLSLLPQSSAPMRSSIDQAFKYICGDTTDDGLTRMLRVI 839
             G+ + + ++ P +MDVLVDTLLSLLP SSAPMRSSI+Q FKY C D T+DGL RMLRVI
Sbjct: 833  DGQGEADDEEEPAVMDVLVDTLLSLLPHSSAPMRSSIEQVFKYFCQDVTNDGLLRMLRVI 892

Query: 840  KKNLKPPRHPXXXXXXXXXXXXXXXXXXXXXXXXQGETGETGESDEQTDDSESVVEMEET 899
            KK+LKP RH                           E GETGESDEQTDDSE+V  +   
Sbjct: 893  KKDLKPSRHQEDQDSDDLDDDEEDCLAIEDAEEENEEMGETGESDEQTDDSEAVTGVVPM 952

Query: 900  SHGDPEASN----DSDSGMDDDAMFRMDTYLAQIFKEKKNQSGGETAHSQLVLFKLRILS 955
            +       N    D D GMDDDAMFRMDTYLAQIFKEK+NQ+GGETA SQLVLFKLR+LS
Sbjct: 953  AVDREVPENSDDSDDDDGMDDDAMFRMDTYLAQIFKEKRNQAGGETAQSQLVLFKLRVLS 1012

Query: 956  LLEIFLHENPGKPQVLLVFSNLAQAFVNPHTAEVSEQLGQRIWGILQKQIFKAKDYPKGD 1015
            LLEI+LHEN  KPQV+ V+ NL QA +NP TAE S  L QRIWGI+QK+IFKAK++PK +
Sbjct: 1013 LLEIYLHENSDKPQVMTVYLNLVQAMLNPSTAESSLPLLQRIWGIIQKKIFKAKEFPKDE 1072

Query: 1016 GVQVSTLESLLERNXXXXXXXXXXXXXXXXXXXXXXXXXXVNLKKKQSAV--RQKMVSSL 1073
             ++ S L SLLE+N                             KKKQSA   R KM++ L
Sbjct: 1073 SMEFSALASLLEKNLKLAAKPFKSKKSGVDPS-----------KKKQSAAWNRYKMITHL 1121

Query: 1074 AQQSTFWILKIIDSGNFSESELGRIVQIFRAALTGYFDNKKSQIKAGFLKEIFRRRPWIG 1133
             Q ST+W++KIIDS  FSE+EL +I+ +FR+A+TGYFD++KSQ+K  FL+E+FRRRPWIG
Sbjct: 1122 GQNSTYWVMKIIDSRKFSETELEKILDVFRSAVTGYFDSRKSQLKIDFLEEVFRRRPWIG 1181

Query: 1134 HAVLGSILQKCGNAKSDFRRVEALDLVLEILKS---TGGNDQSASRKIVKSNLDKLSFLM 1190
            H + G +L+   NA  +FRR+EALDL+ E L+S      N Q+ SRK + ++L +L  L+
Sbjct: 1182 HQLFGFLLEASVNANVEFRRLEALDLITETLRSLIPINENTQADSRKTMTTHLKELILLI 1241

Query: 1191 KELVTNMPSKSARRSEVNKFCVKCFEILSKLNLTKPLVKALPPDAQAALEAQLGDKFTRL 1250
            KELV NMP    RR++V KFC + F+++S L LTK  +K L  D + A E   GD F  L
Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLKLTKSFLKGLGQDGRTACEDAFGDLFLNL 1301

Query: 1251 K 1251
            K
Sbjct: 1302 K 1302