Miyakogusa Predicted Gene

Lj6g3v2172030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2172030.1 Non Chatacterized Hit- tr|C5X4U9|C5X4U9_SORBI
Putative uncharacterized protein Sb02g042200 OS=Sorghu,52.44,5e-17,
,CUFF.60748.1
         (84 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10380.1 | Symbols: SEC8, ATSEC8 | subunit of exocyst complex...   124   2e-29

>AT3G10380.1 | Symbols: SEC8, ATSEC8 | subunit of exocyst complex 8
           | chr3:3219922-3228356 REVERSE LENGTH=1053
          Length = 1053

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 68/82 (82%), Gaps = 1/82 (1%)

Query: 1   MAPGGKAHVAAKELLDSILDAVVQIIENHVAVGELLEAKVCRHADMNTPKSMPVDVNWNP 60
           MAPGGKA  AAKELLDSILD +V+I ENHV +GELLE K  +H D+NTP+S+P DVNWN 
Sbjct: 436 MAPGGKAQAAAKELLDSILDTIVKIFENHVVIGELLEMKASQH-DINTPRSLPTDVNWNT 494

Query: 61  DSETSQATGGYSLGFSLTMLQT 82
           +SE SQATGGY++ F LT+LQ+
Sbjct: 495 ESEASQATGGYTISFPLTVLQS 516