Miyakogusa Predicted Gene

Lj6g3v2171770.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2171770.2 tr|A9SDH9|A9SDH9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_211137,53.42,0.00000000000002,seg,NULL;
coiled-coil,NULL,CUFF.60795.2
         (294 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33690.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   107   1e-23

>AT4G33690.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: chloroplast;
          EXPRESSED IN: pollen tube; Has 543 Blast hits to 512
          proteins in 106 species: Archae - 0; Bacteria - 0;
          Metazoa - 281; Fungi - 54; Plants - 72; Viruses - 0;
          Other Eukaryotes - 136 (source: NCBI BLink). |
          chr4:16175198-16176137 FORWARD LENGTH=246
          Length = 246

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 68/98 (69%)

Query: 1  MDLESENXXXXXXXXXXXXXXXQAEKEGVLAYLSKPNVRNRPNSRFLTATVLGVQQSNRV 60
          MDLE+EN               QAEK+GV AYL KPNVR+RPNSRFLTATVLGVQQ+N+ 
Sbjct: 1  MDLETENRIASILLREAAELRRQAEKDGVRAYLEKPNVRHRPNSRFLTATVLGVQQANKA 60

Query: 61 VEVNEMWRVRQKEKELDERVRGTSSDKSSGDRSHRDDK 98
          VE NEMW +R KE E  ER++  S D+SS  +S ++++
Sbjct: 61 VETNEMWSLRSKEIEFGERLKRKSRDESSNGQSEQNNR 98