Miyakogusa Predicted Gene

Lj6g3v2168640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2168640.1 Non Chatacterized Hit- tr|F6HIM0|F6HIM0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,60.26,0,no
description,Helix-loop-helix domain; HLH,Helix-loop-helix domain;
coiled-coil,NULL; helix loop
he,NODE_85107_length_903_cov_18.770763.path1.1
         (221 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix (b...   220   6e-58
AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   215   2e-56
AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   207   4e-54
AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   147   5e-36
AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   147   6e-36
AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH) DN...   143   8e-35
AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    74   8e-14
AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    74   1e-13
AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    74   1e-13
AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    73   1e-13
AT3G47640.3 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    48   6e-06
AT3G47640.2 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    48   6e-06
AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    48   6e-06

>AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr5:22217270-22218993 FORWARD LENGTH=234
          Length = 234

 Score =  220 bits (561), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 143/192 (74%), Gaps = 2/192 (1%)

Query: 32  SVELDDTYGNSDAFKEXXXXXXXXXXXCNLSGSKACREKMRRDQLNDRFLELSSILDPGR 91
           S  +D + GNS+A KE            + + SKACREK RRD+LND+F+EL +IL+PG 
Sbjct: 43  SAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGN 102

Query: 92  PSKMDKMGILSDAVRVVSQLREDAQKLRESTENLQGKINELKAEKNELRDEKQQLRAEKD 151
           P K DK  IL DAVR+V+QLR +AQKL++S  +LQ KI ELK EKNELRDEKQ+L+ EK+
Sbjct: 103 PPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKE 162

Query: 152 IIEQKLKAISS-QPSFLPHHSTLPTAFPAPR-HVVGSKLMPIIGYPGVSMWQFLPSAAVD 209
            +EQ+LKA+++ QPSF P    +PTAF + +    G+K++PII YPGV+MWQF+P A+VD
Sbjct: 163 KLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVD 222

Query: 210 TSQDHVLRPPVA 221
           TSQDHVLRPPVA
Sbjct: 223 TSQDHVLRPPVA 234


>AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=226
          Length = 226

 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/227 (50%), Positives = 146/227 (64%), Gaps = 12/227 (5%)

Query: 2   DNCNWMLDYG---GYLELDXXXXXXXXXXXXTLSVELDDTYGNSDAFKEXXXXXXXXXXX 58
           +N NW+ DY    G                 T+SVE+D    ++D  KE           
Sbjct: 5   ENTNWLSDYPLIEGAFSDQNPTFPWQIDGSATVSVEVDGFLCDADVIKEPSSRKRIKTES 64

Query: 59  CNLSGSKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKL 118
           C  S SKACREK RRD+LND+F ELSS+L+PGR  K DK+ I++DA+R+V+Q R++AQKL
Sbjct: 65  CTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKL 124

Query: 119 RESTENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQPS----FLPHHSTLP 174
           ++   +LQ KI ELK EKNELRDEKQ+L+ EK+ I+Q+LKAI +QP     FLP+  TL 
Sbjct: 125 KDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLS 184

Query: 175 TAFPAPRHVVGSKLMPIIGYPGVSMWQFLPSAAVDTSQDHVLRPPVA 221
            A        GSKL+P   YPG +MWQF+P AAVDTSQDHVLRPPVA
Sbjct: 185 QA-----QAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226


>AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=292
          Length = 292

 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 136/194 (70%), Gaps = 9/194 (4%)

Query: 32  SVELDDTYGNSDAFKEXXXXXXXXXXXCNLSGSKACREKMRRDQLNDRFLELSSILDPGR 91
           SVE+D    ++D  KE           C  S SKACREK RRD+LND+F ELSS+L+PGR
Sbjct: 104 SVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGR 163

Query: 92  PSKMDKMGILSDAVRVVSQLREDAQKLRESTENLQGKINELKAEKNELRDEKQQLRAEKD 151
             K DK+ I++DA+R+V+Q R++AQKL++   +LQ KI ELK EKNELRDEKQ+L+ EK+
Sbjct: 164 TPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKE 223

Query: 152 IIEQKLKAISS----QPSFLPHHSTLPTAFPAPRHVVGSKLMPIIGYPGVSMWQFLPSAA 207
            I+Q+LKAI +    QP FLP+  TL  A        GSKL+P   YPG +MWQF+P AA
Sbjct: 224 RIDQQLKAIKTQPQPQPCFLPNPQTLSQA-----QAPGSKLVPFTTYPGFAMWQFMPPAA 278

Query: 208 VDTSQDHVLRPPVA 221
           VDTSQDHVLRPPVA
Sbjct: 279 VDTSQDHVLRPPVA 292


>AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300418-8301503
           FORWARD LENGTH=277
          Length = 277

 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 113/160 (70%), Gaps = 10/160 (6%)

Query: 63  GSKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLREST 122
           G+KACRE++RR++LN+RF++LSS+L+PGR  K DK  IL DA+R+++QLR++A KL E+ 
Sbjct: 127 GTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETN 186

Query: 123 ENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQPS-FLPHHSTLPTAFPAPR 181
           + L  +I  LKAEKNELR+EK  L+A+K+  EQ+LK++++  S F+PH   +P AF   +
Sbjct: 187 QKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPH---IPAAFNHNK 243

Query: 182 HVVGSKLMPIIGYPGVSMWQFLPSAAVDTSQDHVLRPPVA 221
             V     P  GY  + MW ++P +  DTS+D  LRPP A
Sbjct: 244 MAV----YPSYGY--MPMWHYMPQSVRDTSRDQELRPPAA 277


>AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300077-8301503
           FORWARD LENGTH=283
          Length = 283

 Score =  147 bits (371), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 113/160 (70%), Gaps = 10/160 (6%)

Query: 63  GSKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLREST 122
           G+KACRE++RR++LN+RF++LSS+L+PGR  K DK  IL DA+R+++QLR++A KL E+ 
Sbjct: 133 GTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETN 192

Query: 123 ENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQPS-FLPHHSTLPTAFPAPR 181
           + L  +I  LKAEKNELR+EK  L+A+K+  EQ+LK++++  S F+PH   +P AF   +
Sbjct: 193 QKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPH---IPAAFNHNK 249

Query: 182 HVVGSKLMPIIGYPGVSMWQFLPSAAVDTSQDHVLRPPVA 221
             V     P  GY  + MW ++P +  DTS+D  LRPP A
Sbjct: 250 MAV----YPSYGY--MPMWHYMPQSVRDTSRDQELRPPAA 283


>AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:8283255-8284915
           REVERSE LENGTH=320
          Length = 320

 Score =  143 bits (361), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/182 (45%), Positives = 116/182 (63%), Gaps = 9/182 (4%)

Query: 43  DAFKEXXXXXXXXXXXCNLSGSKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILS 102
           + F+E           C+  G+KACREK+RR++LND+F++LSS+L+PGR  K DK  IL 
Sbjct: 145 EEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILD 204

Query: 103 DAVRVVSQLREDAQKLRESTENLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKA-IS 161
           DA+RVV+QLR +A +L+E+ + L  +I  LKA+KNELR+EK  L+AEK+ +EQ+LK+ + 
Sbjct: 205 DAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVV 264

Query: 162 SQPSFLPHHSTLPTAFPAPRHVVGSKLMPIIGY--PGVSMWQFLPSAAVDTSQDHVLRPP 219
             P F+P  S  P AF + +  V        GY  P + MW  LP A  DTS+D    PP
Sbjct: 265 PSPGFMP--SQHPAAFHSHKMAVAYPY----GYYPPNMPMWSPLPPADRDTSRDLKNLPP 318

Query: 220 VA 221
           VA
Sbjct: 319 VA 320


>AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6903842-6905863
           FORWARD LENGTH=337
          Length = 337

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 68/101 (67%), Gaps = 5/101 (4%)

Query: 65  KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
           KA REK+RR++LN+ F+EL ++LDP RP K DK  IL+D V+++ +L  +  KL+     
Sbjct: 63  KAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTA 121

Query: 125 LQGKINELKAEKNELRDEKQQLRAEKDII----EQKLKAIS 161
           L  +  EL  EKN+LR+EK  L+++ + +    +Q+L+++S
Sbjct: 122 LTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMS 162


>AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055521-17056567
           FORWARD LENGTH=268
          Length = 268

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 2/108 (1%)

Query: 65  KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
           KA REK+RRD+L ++FLEL + LDP RP K DK  +L+D ++++  +     +L+   E 
Sbjct: 31  KAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYET 89

Query: 125 LQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKA-ISSQPSFLPHHS 171
           L  +  EL  EK+ELR+EK  L+++ +I+  + +  I +   ++PH+S
Sbjct: 90  LSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIKTMVPWVPHYS 137


>AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6904579-6905863
           FORWARD LENGTH=284
          Length = 284

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 68/101 (67%), Gaps = 5/101 (4%)

Query: 65  KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
           KA REK+RR++LN+ F+EL ++LDP RP K DK  IL+D V+++ +L  +  KL+     
Sbjct: 10  KAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTA 68

Query: 125 LQGKINELKAEKNELRDEKQQLRAEKDII----EQKLKAIS 161
           L  +  EL  EKN+LR+EK  L+++ + +    +Q+L+++S
Sbjct: 69  LTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMS 109


>AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055397-17056567
           FORWARD LENGTH=286
          Length = 286

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 2/108 (1%)

Query: 65  KACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTEN 124
           KA REK+RRD+L ++FLEL + LDP RP K DK  +L+D ++++  +     +L+   E 
Sbjct: 49  KAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYET 107

Query: 125 LQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKA-ISSQPSFLPHHS 171
           L  +  EL  EK+ELR+EK  L+++ +I+  + +  I +   ++PH+S
Sbjct: 108 LSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIKTMVPWVPHYS 155


>AT3G47640.3 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)

Query: 64  SKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTE 123
           +KA RE+++R+ LN+ F+EL+  L+  +     K  IL +A R +  +    + LR+   
Sbjct: 31  NKAVRERLKREHLNELFIELADTLELNQ-QNSGKASILCEATRFLKDVFGQIESLRKEHA 89

Query: 124 NLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQ------PSFLPHHSTLPTAF 177
           +L  + + +  EKNEL++E   L  E   ++ +++A ++Q       S  P +       
Sbjct: 90  SLLSESSYVTTEKNELKEETSVLETEISKLQNEIEARANQSKPDLNTSPAPEYHHHHYQQ 149

Query: 178 PAPRHVVGSKLMPIIGYPGV--SMWQFLPSAAV 208
             P  V     +PI   PG   S     P A V
Sbjct: 150 QHPERVSQFPGLPIFQGPGFQQSATTLHPPATV 182


>AT3G47640.2 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)

Query: 64  SKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTE 123
           +KA RE+++R+ LN+ F+EL+  L+  +     K  IL +A R +  +    + LR+   
Sbjct: 31  NKAVRERLKREHLNELFIELADTLELNQ-QNSGKASILCEATRFLKDVFGQIESLRKEHA 89

Query: 124 NLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQ------PSFLPHHSTLPTAF 177
           +L  + + +  EKNEL++E   L  E   ++ +++A ++Q       S  P +       
Sbjct: 90  SLLSESSYVTTEKNELKEETSVLETEISKLQNEIEARANQSKPDLNTSPAPEYHHHHYQQ 149

Query: 178 PAPRHVVGSKLMPIIGYPGV--SMWQFLPSAAV 208
             P  V     +PI   PG   S     P A V
Sbjct: 150 QHPERVSQFPGLPIFQGPGFQQSATTLHPPATV 182


>AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 9/153 (5%)

Query: 64  SKACREKMRRDQLNDRFLELSSILDPGRPSKMDKMGILSDAVRVVSQLREDAQKLRESTE 123
           +KA RE+++R+ LN+ F+EL+  L+  +     K  IL +A R +  +    + LR+   
Sbjct: 31  NKAVRERLKREHLNELFIELADTLELNQ-QNSGKASILCEATRFLKDVFGQIESLRKEHA 89

Query: 124 NLQGKINELKAEKNELRDEKQQLRAEKDIIEQKLKAISSQ------PSFLPHHSTLPTAF 177
           +L  + + +  EKNEL++E   L  E   ++ +++A ++Q       S  P +       
Sbjct: 90  SLLSESSYVTTEKNELKEETSVLETEISKLQNEIEARANQSKPDLNTSPAPEYHHHHYQQ 149

Query: 178 PAPRHVVGSKLMPIIGYPGV--SMWQFLPSAAV 208
             P  V     +PI   PG   S     P A V
Sbjct: 150 QHPERVSQFPGLPIFQGPGFQQSATTLHPPATV 182