Miyakogusa Predicted Gene

Lj6g3v2156530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2156530.1 tr|G6FXY1|G6FXY1_9CYAN Photosystem II oxygen
evolving complex protein PsbP (Precursor)
OS=Fischerell,36.03,0.0000000001,PsbP,Photosystem II PsbP, oxygen
evolving complex; no description,Mog1/PsbP, alpha/beta/alpha
sandwi,CUFF.60711.1
         (170 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15510.1 | Symbols:  | Photosystem II reaction center PsbP fa...   204   2e-53
AT4G15510.2 | Symbols:  | Photosystem II reaction center PsbP fa...   204   2e-53
AT4G15510.3 | Symbols:  | Photosystem II reaction center PsbP fa...   200   4e-52

>AT4G15510.1 | Symbols:  | Photosystem II reaction center PsbP
           family protein | chr4:8860701-8862529 FORWARD LENGTH=287
          Length = 287

 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 117/144 (81%), Gaps = 5/144 (3%)

Query: 19  AVPRRKAM--SLILSSCILSKVGL--AFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAG 74
           AV RRK+M   L++S  I+S+  L  AFA  P VFREY+DTFDGYSFKYP NWIQVRGAG
Sbjct: 76  AVGRRKSMMMGLLMSGLIVSQANLPTAFASTP-VFREYIDTFDGYSFKYPQNWIQVRGAG 134

Query: 75  ADIFFRDPYILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRR 134
           ADIFFRDP +LDENLS+E        Y S+EDLG P+E GK+VL+QYLTEFMSTRLGV+R
Sbjct: 135 ADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKR 194

Query: 135 EANVLSTSSRVADDGKLYYQVEVG 158
           +AN+LSTSSRVADDGKLYYQVEV 
Sbjct: 195 QANILSTSSRVADDGKLYYQVEVN 218


>AT4G15510.2 | Symbols:  | Photosystem II reaction center PsbP
           family protein | chr4:8860701-8861794 FORWARD LENGTH=229
          Length = 229

 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/143 (71%), Positives = 117/143 (81%), Gaps = 5/143 (3%)

Query: 19  AVPRRKAM--SLILSSCILSKVGL--AFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAG 74
           AV RRK+M   L++S  I+S+  L  AFA  P VFREY+DTFDGYSFKYP NWIQVRGAG
Sbjct: 76  AVGRRKSMMMGLLMSGLIVSQANLPTAFASTP-VFREYIDTFDGYSFKYPQNWIQVRGAG 134

Query: 75  ADIFFRDPYILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRR 134
           ADIFFRDP +LDENLS+E        Y S+EDLG P+E GK+VL+QYLTEFMSTRLGV+R
Sbjct: 135 ADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKR 194

Query: 135 EANVLSTSSRVADDGKLYYQVEV 157
           +AN+LSTSSRVADDGKLYYQVEV
Sbjct: 195 QANILSTSSRVADDGKLYYQVEV 217


>AT4G15510.3 | Symbols:  | Photosystem II reaction center PsbP
           family protein | chr4:8861351-8862529 FORWARD LENGTH=205
          Length = 205

 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 111/135 (82%), Gaps = 3/135 (2%)

Query: 26  MSLILSSCILSKVGL--AFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAGADIFFRDPY 83
           M L++S  I+S+  L  AFA   PVFREY+DTFDGYSFKYP NWIQVRGAGADIFFRDP 
Sbjct: 3   MGLLMSGLIVSQANLPTAFAS-TPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPV 61

Query: 84  ILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSS 143
           +LDENLS+E        Y S+EDLG P+E GK+VL+QYLTEFMSTRLGV+R+AN+LSTSS
Sbjct: 62  VLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSS 121

Query: 144 RVADDGKLYYQVEVG 158
           RVADDGKLYYQVEV 
Sbjct: 122 RVADDGKLYYQVEVN 136