Miyakogusa Predicted Gene

Lj6g3v2156520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2156520.1 Non Chatacterized Hit- tr|I1JR38|I1JR38_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,77.36,0.000000000000001,seg,NULL; no description,Mog1/PsbP,
alpha/beta/alpha sandwich; Mog1p/PsbP-like,Mog1/PsbP/DUF1795,
al,CUFF.60710.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15510.1 | Symbols:  | Photosystem II reaction center PsbP fa...   317   5e-87
AT4G15510.3 | Symbols:  | Photosystem II reaction center PsbP fa...   312   1e-85
AT4G15510.2 | Symbols:  | Photosystem II reaction center PsbP fa...   204   4e-53
AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA bin...    82   5e-16
AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 | chr3:2051403...    53   3e-07

>AT4G15510.1 | Symbols:  | Photosystem II reaction center PsbP
           family protein | chr4:8860701-8862529 FORWARD LENGTH=287
          Length = 287

 Score =  317 bits (812), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 156/208 (75%), Positives = 177/208 (85%), Gaps = 5/208 (2%)

Query: 58  AVPRRKAM--SLILSSCILSKVGL--AFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAG 113
           AV RRK+M   L++S  I+S+  L  AFA  P VFREY+DTFDGYSFKYP NWIQVRGAG
Sbjct: 76  AVGRRKSMMMGLLMSGLIVSQANLPTAFASTP-VFREYIDTFDGYSFKYPQNWIQVRGAG 134

Query: 114 ADIFFRDPYILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRR 173
           ADIFFRDP +LDENLS+E        Y S+EDLG P+E GK+VL+QYLTEFMSTRLGV+R
Sbjct: 135 ADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKR 194

Query: 174 EANVLSTSSRVADDGKLYYQVEVNIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENN 233
           +AN+LSTSSRVADDGKLYYQVEVNIKSYA+NNELAVMPQDRV RLEW+RRYL+VLGVEN+
Sbjct: 195 QANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVEND 254

Query: 234 QLYELRLQTPENVFQEEESDLRRVMDSF 261
           +LY +RLQTPE VF EEE DLRRVMDSF
Sbjct: 255 RLYSIRLQTPEKVFLEEEKDLRRVMDSF 282


>AT4G15510.3 | Symbols:  | Photosystem II reaction center PsbP
           family protein | chr4:8861351-8862529 FORWARD LENGTH=205
          Length = 205

 Score =  312 bits (799), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/199 (75%), Positives = 171/199 (85%), Gaps = 3/199 (1%)

Query: 65  MSLILSSCILSKVGL--AFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAGADIFFRDPY 122
           M L++S  I+S+  L  AFA  P VFREY+DTFDGYSFKYP NWIQVRGAGADIFFRDP 
Sbjct: 3   MGLLMSGLIVSQANLPTAFASTP-VFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPV 61

Query: 123 ILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSS 182
           +LDENLS+E        Y S+EDLG P+E GK+VL+QYLTEFMSTRLGV+R+AN+LSTSS
Sbjct: 62  VLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSS 121

Query: 183 RVADDGKLYYQVEVNIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQT 242
           RVADDGKLYYQVEVNIKSYA+NNELAVMPQDRV RLEW+RRYL+VLGVEN++LY +RLQT
Sbjct: 122 RVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQT 181

Query: 243 PENVFQEEESDLRRVMDSF 261
           PE VF EEE DLRRVMDSF
Sbjct: 182 PEKVFLEEEKDLRRVMDSF 200


>AT4G15510.2 | Symbols:  | Photosystem II reaction center PsbP
           family protein | chr4:8860701-8861794 FORWARD LENGTH=229
          Length = 229

 Score =  204 bits (519), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 118/144 (81%), Gaps = 5/144 (3%)

Query: 58  AVPRRKAM--SLILSSCILSKVGL--AFAQQPPVFREYVDTFDGYSFKYPGNWIQVRGAG 113
           AV RRK+M   L++S  I+S+  L  AFA  P VFREY+DTFDGYSFKYP NWIQVRGAG
Sbjct: 76  AVGRRKSMMMGLLMSGLIVSQANLPTAFASTP-VFREYIDTFDGYSFKYPQNWIQVRGAG 134

Query: 114 ADIFFRDPYILDENLSLEIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRR 173
           ADIFFRDP +LDENLS+E        Y S+EDLG P+E GK+VL+QYLTEFMSTRLGV+R
Sbjct: 135 ADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKR 194

Query: 174 EANVLSTSSRVADDGKLYYQVEVN 197
           +AN+LSTSSRVADDGKLYYQVEV+
Sbjct: 195 QANILSTSSRVADDGKLYYQVEVS 218


>AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA
           binding | chr1:3015473-3018035 FORWARD LENGTH=378
          Length = 378

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 43/53 (81%)

Query: 1   MLMMGGNRFTGVFLSRLFVKEGHQVTLCTRGEVPITQHLPDESDSDCADFSSK 53
           +L+MGG RF G+FLSR+ VKEGHQVTL TRG+ PI + LP ESD D ADFSSK
Sbjct: 56  ILIMGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSK 108


>AT3G55330.1 | Symbols: PPL1 | PsbP-like protein 1 |
           chr3:20514031-20515275 REVERSE LENGTH=230
          Length = 230

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 29/191 (15%)

Query: 72  CILSKVGLAFAQQPPV-FREYVDTFDGYSFKYPGNWIQVRGAGADIFFRDPYILDENLSL 130
            +LS+  L+FA +    F    D  D Y+F YP  W +V   G D  ++D     E++S+
Sbjct: 64  SLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSV 123

Query: 131 EIXXXXXXQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSSRVADDGKL 190
            +        +++++ GPP++  + ++K+ L            +   L  +S    DGK 
Sbjct: 124 NLVPTSK---QTIKEFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKT 172

Query: 191 YYQVEVNIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQTPENVFQEE 250
           YYQ E  +++                   + R  L  + V N   Y L     E  +++ 
Sbjct: 173 YYQFEFTVQAR-----------------NYTRHALGTITVFNGNFYTLTTGANERRWEKM 215

Query: 251 ESDLRRVMDSF 261
           +  L  V+DSF
Sbjct: 216 KDRLHTVVDSF 226