Miyakogusa Predicted Gene

Lj6g3v2134250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2134250.1 CUFF.60701.1
         (353 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11440.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   122   4e-28
AT3G29075.1 | Symbols:  | glycine-rich protein | chr3:11051645-1...    52   4e-07

>AT1G11440.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: glycine-rich protein (TAIR:AT3G29075.1); Has 19337
           Blast hits to 8589 proteins in 488 species: Archae - 26;
           Bacteria - 641; Metazoa - 7852; Fungi - 2167; Plants -
           955; Viruses - 616; Other Eukaryotes - 7080 (source:
           NCBI BLink). | chr1:3849418-3850509 FORWARD LENGTH=363
          Length = 363

 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 128/262 (48%), Gaps = 24/262 (9%)

Query: 72  VSYSATNFSEPKSLVYDPNYGMS-----QLVI---SYSKLEFNEPEFEEYDPTPYGGGYD 123
           V+YS +  SEPK L YDPN   +     Q  I     S L+FNEPEF+EYDPTPYGGGYD
Sbjct: 85  VAYSVSTMSEPKHLFYDPNLYTTYESPPQFSIYCSVASALDFNEPEFDEYDPTPYGGGYD 144

Query: 124 IVETYGKPLPPSDKICHPRSDGPSSNSIIPLDTVPAVSIVPLPT-VKEGIDEKAIIPQNG 182
           +V TYGKPLPPS + C+P S  P + +  P +      I P+P  + +G  +  +  +  
Sbjct: 145 VVATYGKPLPPSVETCYPCSTAPHAKAPSPPEI-----IAPVPLGIYDGGQKNVVKKRVS 199

Query: 183 TAGQMLEDKPQSQDIISTDQPKEVENNRHVTFDLKAXXXXXXXXXXXXXXXXXXXXCNGY 242
            A  + E KP         +  E  +      D                        + Y
Sbjct: 200 FAEPVEEVKPIETIKEQEQEQDEDYDEESEDEDDGDDDDEEEEEGDEEAKEEEKDHSSSY 259

Query: 243 SGVQYDEHEK-QVPLQY-PSGYGLETVDICESLFGNW-PCLSRMKREQ---QQALGGNNC 296
              +Y+  +K +V   Y PSGYGLE  D+CE +FG + PC+ R KR Q   Q      +C
Sbjct: 260 GNEEYEVVDKGEVKALYVPSGYGLEATDLCEVIFGGYFPCVLRNKRRQEDEQDRGAAVSC 319

Query: 297 QDNM----WQGTADYLFGNPYP 314
            ++     W+ T+D+LFG+ YP
Sbjct: 320 WESNDSDPWKTTSDHLFGDSYP 341


>AT3G29075.1 | Symbols:  | glycine-rich protein |
           chr3:11051645-11052629 REVERSE LENGTH=294
          Length = 294

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 109 EFEEYDPTPYGGGYDIVETYGKPLPPSDKICHPRS 143
           +F EYDP PY GGYDI  TYG+ +PPSD+ C+P S
Sbjct: 13  DFTEYDPMPYSGGYDITVTYGRSIPPSDETCYPLS 47