Miyakogusa Predicted Gene

Lj6g3v2118950.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2118950.2 Non Chatacterized Hit- tr|I1ME83|I1ME83_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55662
PE,85.78,0,SUBFAMILY NOT NAMED,NULL; UBIQUITIN THIOLESTERASE PROTEIN
OTUB,NULL; Peptidase_C65,Peptidase C65, ot,CUFF.60681.2
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28120.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ovarian tu...   309   9e-85

>AT1G28120.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ovarian
           tumour, otubain (InterPro:IPR003323), Ubiquitin
           thioesterase Otubain (InterPro:IPR016615), Peptidase
           C65, otubain (InterPro:IPR019400); Has 413 Blast hits to
           411 proteins in 139 species: Archae - 0; Bacteria - 0;
           Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0;
           Other Eukaryotes - 58 (source: NCBI BLink). |
           chr1:9813219-9815143 REVERSE LENGTH=306
          Length = 306

 Score =  309 bits (792), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 149/226 (65%), Positives = 181/226 (80%), Gaps = 12/226 (5%)

Query: 1   MQNK-EAVSEDGEI--------GSEWNNFGDDDIMQQQHSIQADQANKVPFVGDKEPLSS 51
           MQN+ + V ++ E+        G EW N      ++ Q S Q ++A KVP+VGDKEPLSS
Sbjct: 1   MQNQIDMVKDEAEVAASISAIKGEEWGNCSS---VEDQPSFQEEEAAKVPYVGDKEPLSS 57

Query: 52  LAAEYQSGSAILLEKIKVLDQQYAAIRRTRGDGNCFFRGFMFSYLEHVLVSQDQAEIDRI 111
           LAAEYQSGS ILLEKIK+LD QY  IRRTRGDGNCFFR FMFSYLEH+L SQD+AE+DRI
Sbjct: 58  LAAEYQSGSPILLEKIKILDSQYIGIRRTRGDGNCFFRSFMFSYLEHILESQDRAEVDRI 117

Query: 112 QANVEKSRTALQTLGYTELTFEDFFSLFIEQLESVIQGKETSISHEELVLRSRDQSISDY 171
           + NVEK R  LQ LGYT+ TFEDFF+LF+EQL+ ++QG E SIS++ELV RSRDQS+SDY
Sbjct: 118 KVNVEKCRKTLQNLGYTDFTFEDFFALFLEQLDDILQGTEESISYDELVNRSRDQSVSDY 177

Query: 172 VVMFFRFVTSAEIQKRSEFFEPFILGLTNTTVEQFCKSSVEPMGEE 217
           +VMFFRFVT+ +I+ R++FFEPFI GL+N TV+QFCKSSVEPMGEE
Sbjct: 178 IVMFFRFVTAGDIRTRADFFEPFITGLSNATVDQFCKSSVEPMGEE 223