Miyakogusa Predicted Gene

Lj6g3v2082420.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2082420.3 Non Chatacterized Hit- tr|K4C2N2|K4C2N2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,56.79,3e-19,SUBFAMILY NOT NAMED,NULL; MEF2B
PROTEIN,Uncharacterised protein family UPF0402; NEP,Uncharacterised
,CUFF.60644.3
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39170.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   166   7e-42

>AT2G39170.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function NEP
           (InterPro:IPR019320); Has 57 Blast hits to 57 proteins
           in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19;
           Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes -
           4 (source: NCBI BLink). | chr2:16334726-16335421 REVERSE
           LENGTH=231
          Length = 231

 Score =  166 bits (420), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 87/163 (53%), Positives = 124/163 (76%), Gaps = 2/163 (1%)

Query: 1   MYEFSNVDGFLEISESMAEMIKYVANEPSVGLFFIQHHAQNAVPNVIKVKKNLVEKSHET 60
           M+EFS VDGF EI+ES+AEMIKY+ANEPSVGL++IQ H +NA PNVI +  N++EKS ET
Sbjct: 1   MHEFSTVDGFAEINESLAEMIKYIANEPSVGLYYIQQHIRNAAPNVINLNNNVLEKSRET 60

Query: 61  TLQTQDFEDSIAMVRSMKECGSPIANGMIGEIKKAMVTMKTKQPKRGLI-RPSASGSQTE 119
            L T+D EDSIAMV+SMK+CGSPIA+ MIG+IK ++  M +KQP+RG+I   ++  S++ 
Sbjct: 61  GLHTEDLEDSIAMVKSMKDCGSPIADEMIGDIKNSLAIMSSKQPRRGVILNSTSPWSRSS 120

Query: 120 IASFWGKTTFHAQEGDEKRSNYFSNVFKSAKKKVNSLNWQQPD 162
             +   + + ++Q+  E  SNYF++VF +AK+K +++ W Q D
Sbjct: 121 SITTRTRGSDNSQDNSES-SNYFTSVFMTAKEKASNIKWPQLD 162