Miyakogusa Predicted Gene

Lj6g3v2078150.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2078150.1 Non Chatacterized Hit- tr|D7T3E1|D7T3E1_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,68.57,5e-19,
,CUFF.60623.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21620.1 | Symbols:  | glycine-rich protein | chr4:11491519-1...    70   8e-13
AT4G21620.2 | Symbols:  | glycine-rich protein | chr4:11491519-1...    69   1e-12
AT1G61255.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    59   1e-09

>AT4G21620.1 | Symbols:  | glycine-rich protein |
           chr4:11491519-11491914 FORWARD LENGTH=131
          Length = 131

 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 39/57 (68%)

Query: 98  VVRSTVVCKDKGPCFQKKVTCPAKCFSSFSRSXXXXXXXXXXXXCTIDCKKKCIAYC 154
           VVR TV CK+KGPC  KK+ CPAKCF SFSRS            CT+DCKKKCIAYC
Sbjct: 75  VVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKCIAYC 131


>AT4G21620.2 | Symbols:  | glycine-rich protein |
           chr4:11491519-11491914 FORWARD LENGTH=98
          Length = 98

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 39/57 (68%)

Query: 98  VVRSTVVCKDKGPCFQKKVTCPAKCFSSFSRSXXXXXXXXXXXXCTIDCKKKCIAYC 154
           VVR TV CK+KGPC  KK+ CPAKCF SFSRS            CT+DCKKKCIAYC
Sbjct: 42  VVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKCIAYC 98


>AT1G61255.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: glycine-rich protein (TAIR:AT4G21620.2); Has 58
           Blast hits to 58 proteins in 12 species: Archae - 0;
           Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:22589260-22589691 REVERSE LENGTH=143
          Length = 143

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 94  SKNGVVRSTVVCKDKGPCFQKKVTCPAKCFSSFSRSXXXXXXXXXXXXCTIDCKKKCIAY 153
           SK   VR TV+C++KG C+ KK+TCPAKCF S SR             CTIDC KKC+AY
Sbjct: 86  SKGRGVRLTVMCEEKGHCYMKKLTCPAKCFKSLSRK--GKGYGGGGGGCTIDC-KKCVAY 142

Query: 154 C 154
           C
Sbjct: 143 C 143