Miyakogusa Predicted Gene
- Lj6g3v2078010.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2078010.1 Non Chatacterized Hit- tr|C4J007|C4J007_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,31.03,3e-18,SUBFAMILY
NOT NAMED,NULL; FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS,NULL;
Bromodomain,Bromodomain,CUFF.60618.1
(477 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61215.1 | Symbols: BRD4 | bromodomain 4 | chr1:22573173-2257... 292 4e-79
AT2G42150.1 | Symbols: | DNA-binding bromodomain-containing pro... 142 7e-34
AT2G44430.1 | Symbols: | DNA-binding bromodomain-containing pro... 112 4e-25
AT3G60110.1 | Symbols: | DNA-binding bromodomain-containing pro... 79 1e-14
AT3G57980.1 | Symbols: | DNA-binding bromodomain-containing pro... 78 1e-14
AT5G55040.2 | Symbols: | DNA-binding bromodomain-containing pro... 50 4e-06
AT5G55040.1 | Symbols: | DNA-binding bromodomain-containing pro... 50 4e-06
>AT1G61215.1 | Symbols: BRD4 | bromodomain 4 |
chr1:22573173-22575374 FORWARD LENGTH=475
Length = 475
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 181/373 (48%), Positives = 231/373 (61%), Gaps = 38/373 (10%)
Query: 10 WGTWEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAFTPENCEAKYEEFLKRYSGSTAW 69
WGTWEEL+LG AVLRHGT DW VVA ELR + P+ FTPE C+AKY++ KRY G AW
Sbjct: 14 WGTWEELLLGGAVLRHGTGDWTVVADELRSHS-LPEIFTPEICKAKYKDLRKRYVGCKAW 72
Query: 70 YEELKKARIAELKRALEQSDKKIGALESKLESLKAEKNEKIDDRHVEN-GSGSPASHEPS 128
+EELKK R+AELK AL +S+ IG+LESKL+SLK+E N D+ H N S S EPS
Sbjct: 73 FEELKKKRVAELKAALLKSEDSIGSLESKLQSLKSESN---DECHQNNYDSSRTLSLEPS 129
Query: 129 QKLERV-ESSNKELSKDGLSAGSFTH-ETRTTNWSPERQVPAEDTETKPEASHSSEQVKV 186
K E E ++K+ SKD S GSFT E TTNWSPE K EA EQ K
Sbjct: 130 PKSEGGGECTSKDTSKDLSSVGSFTQQELTTTNWSPE---------AKSEAPVVIEQEK- 179
Query: 187 LNVDNLTHTIYE------GQV-GSLTTXXXXXXXXDC----GRNIKEAASMGESDLLD-S 234
D L + I+E GQV S+ DC G+ + E +++ ESDL D S
Sbjct: 180 -TKDLLHNDIFESVYGGGGQVLPSMRKKRGKRKRKDCSVSVGKEVMEVSAVEESDLFDTS 238
Query: 235 ADVVSLCKESSTSNYDEVAKSSGVDDQIKNLKKTGAGEIMEMLDSIFETQGASAFRRRLD 294
AD+ S+ Y +S Q + E+M++ ++I + + A FRRRLD
Sbjct: 239 ADIASI--------YRSKEAASTSSSQSRGHSLALPKELMKIYNTIAQNECALVFRRRLD 290
Query: 295 SQKRGKYKKMIRRHMDFDTIRSRISDKTIKSARELFRDLLLLANNALVFYSKSTRVYKSA 354
SQKRG+YKK++RRHMD DT++SRI+ +I SA+ELFRD LL+ANNA +FYSK+TR YKSA
Sbjct: 291 SQKRGRYKKLVRRHMDLDTVQSRINGCSISSAKELFRDFLLVANNAAIFYSKNTREYKSA 350
Query: 355 MLLRDLVTKKMRE 367
+ LRD+VTK +R
Sbjct: 351 VGLRDIVTKSLRH 363
>AT2G42150.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr2:17572463-17574564 FORWARD LENGTH=631
Length = 631
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 124/429 (28%), Positives = 196/429 (45%), Gaps = 75/429 (17%)
Query: 10 WGTWEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAFTPENCEAKYEEFLKRYSG---- 65
W TWEEL+L AV RHGT+ W V+ E++ +P + T C KY + R++
Sbjct: 16 WSTWEELLLACAVHRHGTESWNSVSAEIQKLSPNLCSLTASACRHKYFDLKSRFTQELPV 75
Query: 66 -------STA-WYEELKKARIAELKRALEQSDKKIGALESKLESLKAEK----------- 106
STA W EEL+K R+ EL+R +EQ D I L+SK++ L+ E+
Sbjct: 76 PESVAEISTAPWLEELRKLRVDELRREVEQYDLSISTLQSKVKQLEEEREMSFIKPDTET 135
Query: 107 -NEKIDDRHVENGSGSPASHEPSQKLERVESSNKELSKDGLSAGSFT---HETRTTNWSP 162
N ++ + + SG P + P Q + N+ +S D GS E +
Sbjct: 136 ENLDLERKKERSDSGEPVPNPPVQLM------NETISPDPKEIGSENTEREEEMAGSGGG 189
Query: 163 ERQVPAEDT------ETKPEASHSSEQVKVLNVDNLTHTIYEGQVGSLTTXXXXXXXXDC 216
E ++ ED+ + E + +SE+V+ ++V L +
Sbjct: 190 ESKLAGEDSCRGSCESVEKEPTTNSERVEPVSVTELIES--------------------- 228
Query: 217 GRNIKEAASMGESDLLDSADVVSLCKE-SSTSNYDEVAKSSGVDDQIKNLKKTGAGEIME 275
++ AS GE D SL ++ +S + ++ + +S D ++ + ++
Sbjct: 229 ----EDGASRGEEITSDVQSSASLPRKGTSEPDKEDQSPTSAKDFTVE------SQPLIS 278
Query: 276 MLDSIFETQGASAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKTIKSAR-ELFRDLL 334
++ + S F RRL+ Q+ +Y +IR H+DF+ IR R+ KS R FRDLL
Sbjct: 279 FVEILLSHPCGSHFSRRLERQETIEYGTIIREHVDFEIIRKRVEGGLYKSWRINFFRDLL 338
Query: 335 LLANNALVFYSKSTRVYKSAMLLRDLVTKKMRETSKGISSSKVTTTSEANESSKLPVQNP 394
LL NNA VFY + + +K A L LV K+M T KG+S+ + S E V P
Sbjct: 339 LLVNNARVFYHRGSSEFKFAEQLHQLVKKQMTTTLKGLSNRDEISISPPKEEV---VAIP 395
Query: 395 RVKPRSVRP 403
KP S +P
Sbjct: 396 SSKPVSSKP 404
>AT2G44430.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr2:18333603-18336165 FORWARD LENGTH=646
Length = 646
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/409 (27%), Positives = 179/409 (43%), Gaps = 93/409 (22%)
Query: 10 WGTWEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAFTPEN-CEAKYEEFLKRY----- 63
WGTWEEL+L AV RHG DW VA E+R R+ N C KY + +R+
Sbjct: 50 WGTWEELLLACAVKRHGFGDWDSVATEVRSRSSLSHLLASANDCRHKYRDLKRRFHEQEK 109
Query: 64 -----------------SGSTAWYEELKKARIAELKRALEQSDKKIGALESKLESLKAE- 105
+ W E+L+ R+AEL+R +E+ D I +L+ K++ L+ E
Sbjct: 110 TDVTATVEEEEEEEERVGNNIPWLEQLRNLRVAELRREVERYDCSILSLQLKVKKLEEER 169
Query: 106 ---------KNEKIDDRHVENGSGSPASHEPSQKLERVESSNKELSKDGLSAGSFTHETR 156
+NE+ ++R +GS S + E + N+ +++ +A
Sbjct: 170 EVGEEKPDLENERKEERSENDGSESEHREKAVSAAEESDRENRSMNESNSTA-------- 221
Query: 157 TTNWSPERQVPAEDTETKPEASHSSEQVKVLNVDNLTHTIYEGQVGSLTTXXXXXXXXDC 216
T ER E ++T+ + S + + V N T E + GS++
Sbjct: 222 -TAGEEERVCGDEPSQTREDDSGNDKNPDPDPV-NKDATAAEEEEGSVS----------- 268
Query: 217 GRNIKEAASMGESDLLDSADVVSLCKESSTSNYDEVAKSSGVDDQI--KNLKKTGAGEI- 273
+ S S+ DE+ +S + + K K+ GAGEI
Sbjct: 269 -------------------------RGSEASHSDELGESGTSESKWKRKRRKQGGAGEIR 303
Query: 274 ---------MEMLDSIFETQGASAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKTIK 324
+ +LD I S F RRL SQ+ YK M+++H+D +TI+ ++ +
Sbjct: 304 SAESKSQPLISLLDLIRSHPRGSLFERRLRSQEAKDYKSMVKQHLDIETIQRKLKQGSYD 363
Query: 325 SARELF-RDLLLLANNALVFYSKSTRVYKSAMLLRDLVTKKMR-ETSKG 371
S+ +F RDL LL NA+VF+ S+ +A LR +V+++MR ET K
Sbjct: 364 SSSLIFYRDLQLLFTNAIVFFPLSSSESMAAHELRAVVSQEMRKETGKA 412
>AT3G60110.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr3:22197993-22201159 FORWARD LENGTH=641
Length = 641
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 20/118 (16%)
Query: 10 WGTWEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAFTPENCEAKYEEFLKRYS----- 64
WGTWEEL+L AV RH DW VA E++ R+ + NC KY++ +R+
Sbjct: 52 WGTWEELVLTCAVKRHAFSDWDSVAKEVQARSRSSLIVSAVNCRLKYQDLKRRFQDSVDV 111
Query: 65 ---------------GSTAWYEELKKARIAELKRALEQSDKKIGALESKLESLKAEKN 107
G +W E+L+ +AEL+R +++ D I +L+ K++ L+ EK+
Sbjct: 112 GDENTEAAANEEDEVGEISWLEQLRSLHMAELRREVQRCDDSILSLQLKVKKLEEEKD 169
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 273 IMEMLDSIFETQGASAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKT-IKSARELFR 331
+++++ I S F RL SQ YK++IR+H+D TI ++ + + S+ +R
Sbjct: 303 LIDIIKLIRSHPRGSVFESRLRSQDTKDYKRLIRQHLDMKTIEKKMEKGSYVSSSLSFYR 362
Query: 332 DLLLLANNALVFYSKSTRVYKSAMLLRDLVTKKMR 366
DL LL NA+VF+ S+ +A LR LV+ +M+
Sbjct: 363 DLKLLFTNAIVFFPTSSSESIAAQELRTLVSNEMK 397
>AT3G57980.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr3:21466919-21469148 REVERSE LENGTH=632
Length = 632
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 287 SAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKTIKSAR-ELFRDLLLLANNALVFYS 345
S F RRL++Q+ Y ++IR+H+DF+ IRSR+ + K+AR + FRDLLLL NN VFY
Sbjct: 292 SHFSRRLETQETSDYYRIIRQHIDFEMIRSRVEEGYYKTARTKFFRDLLLLINNVRVFYG 351
Query: 346 KSTRVYKSAMLLRDLVTKKM 365
+ + + +A L L+ K+M
Sbjct: 352 EPSPEFNAAKQLYQLIKKQM 371
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 13 WEELILGAAVLRHGTQDWKVVAGELRVRTPCPDAFTPENCEAKYEEFLKRYS-------- 64
EEL+L AV RHGT W VA E+ + T +C KY + +R+S
Sbjct: 1 MEELLLACAVHRHGTDSWDSVASEVHKQNSTFRTLTAIDCRHKYNDLKRRFSRNLVSPGS 60
Query: 65 ----------GSTAWYEELKKARIAELKRALEQSDKKIGALESKLESLKAEK-------N 107
S W EEL+K R+ EL+R +E+ D I +L+ K+++L+ E+ N
Sbjct: 61 ADEETLAAEISSVPWLEELRKLRVDELRREVERYDLSISSLQLKVKTLEDEREKSLKTEN 120
Query: 108 EKID------DRHVENGSGS 121
+D + H E+G+ S
Sbjct: 121 SDLDRIAETKENHTESGNNS 140
>AT5G55040.2 | Symbols: | DNA-binding bromodomain-containing
protein | chr5:22327727-22331703 REVERSE LENGTH=916
Length = 916
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%)
Query: 276 MLDSIFETQGASAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKTIKSARELFRDLLL 335
+LD + + + +D ++ Y MI MDF T+R ++++ + + EL D+LL
Sbjct: 194 ILDKLQKKDIYGVYAEPVDPEELPDYHDMIEHPMDFSTVRKKLANGSYSTLEELESDVLL 253
Query: 336 LANNALVFYSKSTRVYKSAMLLRDLVTKKM 365
+ +NA+ + S T YK A ++++ +K
Sbjct: 254 ICSNAMQYNSSDTVYYKQARTIQEMGKRKF 283
>AT5G55040.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr5:22327727-22331703 REVERSE LENGTH=916
Length = 916
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%)
Query: 276 MLDSIFETQGASAFRRRLDSQKRGKYKKMIRRHMDFDTIRSRISDKTIKSARELFRDLLL 335
+LD + + + +D ++ Y MI MDF T+R ++++ + + EL D+LL
Sbjct: 194 ILDKLQKKDIYGVYAEPVDPEELPDYHDMIEHPMDFSTVRKKLANGSYSTLEELESDVLL 253
Query: 336 LANNALVFYSKSTRVYKSAMLLRDLVTKKM 365
+ +NA+ + S T YK A ++++ +K
Sbjct: 254 ICSNAMQYNSSDTVYYKQARTIQEMGKRKF 283