Miyakogusa Predicted Gene
- Lj6g3v2055770.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2055770.1 tr|B9N763|B9N763_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_785648 PE=4
SV=1,47.79,7e-19,seg,NULL,CUFF.60616.1
(153 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11120.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 132 6e-32
AT1G11120.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 119 8e-28
AT1G58007.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 75 1e-14
AT1G58007.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 75 1e-14
AT4G28170.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 68 3e-12
AT1G09812.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 66 8e-12
>AT1G11120.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 10 plant
structures; EXPRESSED DURING: 4 anthesis, F mature
embryo stage, petal differentiation and expansion stage,
E expanded cotyledon stage, D bilateral stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:3715229-3717320 FORWARD
LENGTH=161
Length = 161
Score = 132 bits (333), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 86/134 (64%), Gaps = 11/134 (8%)
Query: 9 SWPPIGAPLNVRADQLQHWTSNFDSTVNAVSFGFVATAILISMFLVMAIFERFLXXXXXX 68
WPPIGAP+N+R ++ W S FD +VNAVSFGFVATAILISMFLVMAIFER +
Sbjct: 14 QWPPIGAPMNLRREE--PWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTS 71
Query: 69 XXXXXXX------AVESQVALGG---KLGHSSPKMNGYGSWVSVLMPGEETPSFIAHPAP 119
++S+V G KLG+ SPKM Y + VSVLMPG++ P+FIAHPAP
Sbjct: 72 TTNSDSSSSRVLPGMDSRVGFNGAATKLGYQSPKMTVYSNGVSVLMPGDDIPTFIAHPAP 131
Query: 120 APCSPERISWPSHH 133
PC P+ IS H
Sbjct: 132 VPCPPQNISQSQHQ 145
>AT1G11120.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G09812.1); Has 270 Blast hits to 255 proteins
in 62 species: Archae - 0; Bacteria - 2; Metazoa - 93;
Fungi - 14; Plants - 126; Viruses - 0; Other Eukaryotes
- 35 (source: NCBI BLink). | chr1:3715229-3717320
FORWARD LENGTH=187
Length = 187
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 87/164 (53%), Gaps = 37/164 (22%)
Query: 5 NNGGSWPPIGAPLNVRADQLQHWTSNFDSTVNAVSFGFVATAILISMFLVMAIFERFLXX 64
N WPPIGAP+N+R ++ W S FD +VNAVSFGFVATAILISMFLVMAIFER +
Sbjct: 10 NLNHQWPPIGAPMNLRREE--PWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRT 67
Query: 65 XXXXXXXXXXX------AVESQVALGG---KLGHSSPK---------------------- 93
++S+V G KLG+ SPK
Sbjct: 68 TTTSTTNSDSSSSRVLPGMDSRVGFNGAATKLGYQSPKASNNRIVFSFSFNILKSELFIV 127
Query: 94 ----MNGYGSWVSVLMPGEETPSFIAHPAPAPCSPERISWPSHH 133
M Y + VSVLMPG++ P+FIAHPAP PC P+ IS H
Sbjct: 128 IILRMTVYSNGVSVLMPGDDIPTFIAHPAPVPCPPQNISQSQHQ 171
>AT1G58007.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G09812.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr1:21446237-21447059 REVERSE LENGTH=115
Length = 115
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 33 STVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXXXAVESQVALGGKLGHSSP 92
S++NA+SFGFVATAILI MF++MAI E L + + Q KL +
Sbjct: 21 SSMNAISFGFVATAILILMFIIMAILEH-LFRSDHSSSYDVDDSSQFQ-----KLAEKAS 74
Query: 93 KMNGYGSWVSVLMPGEETPSFIAHPAPAPCSPERISWPSH 132
+ S VSV+MPG++ PS++A PAP PC E I WPSH
Sbjct: 75 MVPVTTSDVSVVMPGDKLPSYVALPAPFPCRREGIRWPSH 114
>AT1G58007.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G09812.1); Has 91 Blast hits to 91 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:21446237-21447059 REVERSE
LENGTH=115
Length = 115
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 33 STVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXXXAVESQVALGGKLGHSSP 92
S++NA+SFGFVATAILI MF++MAI E L + + Q KL +
Sbjct: 21 SSMNAISFGFVATAILILMFIIMAILEH-LFRSDHSSSYDVDDSSQFQ-----KLAEKAS 74
Query: 93 KMNGYGSWVSVLMPGEETPSFIAHPAPAPCSPERISWPSH 132
+ S VSV+MPG++ PS++A PAP PC E I WPSH
Sbjct: 75 MVPVTTSDVSVVMPGDKLPSYVALPAPFPCRREGIRWPSH 114
>AT4G28170.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G11120.2); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr4:13981635-13982575 FORWARD LENGTH=143
Length = 143
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 4 HNNGGSWPPIGAPLNVRADQLQHWTSNFDSTVNAVSFGFVATAILISMFLVMAIFERFLX 63
H G+ P+ A + F+S+VNAV FG VAT +LI++FL++A FERF+
Sbjct: 38 HRRFGTAGPLAAD--------EEGQGRFESSVNAVPFGLVATGVLIAIFLLIAFFERFMF 89
Query: 64 XXXXXXXXXXXXAVESQVALGGKL-GHSSPKMNGYGSWVSVLMPGEETPSFIAHPAP 119
L K +SPKM+ +SVLMPGE+ P+FIA P P
Sbjct: 90 VKPTPSP-----------PLDQKFPPFASPKMDVCKREISVLMPGEDVPTFIAQPCP 135
>AT1G09812.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G58007.2); Has 93 Blast hits to 93 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:3187817-3188580 FORWARD
LENGTH=128
Length = 128
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 58/115 (50%), Gaps = 21/115 (18%)
Query: 27 WTSNFDSTVNAVSFGFVATAILISMFLVMAIFERFLXXXXXXXXXXXXXAVESQVALGGK 86
W S+ +++NA+SFGFVATAILISMFL+MAIFE + +S + +
Sbjct: 21 WRSS--TSMNAISFGFVATAILISMFLIMAIFEHLF--------RPENSSFDSPHQIRQR 70
Query: 87 LGHSSPKMNGYGSWVSV-----------LMPGEETPSFIAHPAPAPCSPERISWP 130
S + S+ +MPGE+ PS IA PAP PC E I WP
Sbjct: 71 QRDGSSQFQKLADQASMVPVSTVVDVSVVMPGEKLPSHIALPAPLPCRREGIHWP 125