Miyakogusa Predicted Gene
- Lj6g3v2043290.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2043290.1 Non Chatacterized Hit- tr|I3T7G4|I3T7G4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.42,0,RRM_1,RNA
recognition motif domain; RRM_6,NULL; RRM_5,NULL; RNA-binding domain,
RBD,NULL; no descrip,CUFF.60643.1
(517 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 489 e-138
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 479 e-135
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 479 e-135
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 403 e-112
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 400 e-111
AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 131 1e-30
AT2G33435.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 3e-12
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 69 8e-12
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 68 1e-11
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 58 1e-08
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 58 2e-08
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 58 2e-08
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 58 2e-08
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 5e-08
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-08
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 7e-08
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 55 8e-08
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 2e-07
AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 53 5e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 53 5e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 53 5e-07
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 52 1e-06
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 52 1e-06
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 2e-06
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 2e-06
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 50 5e-06
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 49 6e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 49 7e-06
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 49 8e-06
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 8e-06
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/404 (60%), Positives = 293/404 (72%), Gaps = 19/404 (4%)
Query: 118 FDMAPPS--ADGTSAVSGQTLGINHLNQGTAQNFSLFG-ISQPQIGALSLMQVQPMTQQA 174
FDMAPP A A +GQ + ++F + Q+GAL ++ VQ MTQQA
Sbjct: 191 FDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQA 250
Query: 175 TRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMR 234
TRHARRVY+GGLPP NEQS++TFFS VM+AIGGN+AG GD+VVNVYINHEKKFAF+EMR
Sbjct: 251 TRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 310
Query: 235 TVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXX 294
+VEEASNAM+LDGI+ EGV V+VRRPTDYNP+LAA LGP QP+P LNL AV
Sbjct: 311 SVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGG 370
Query: 295 XXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
RIFVGGLPYYF E QIRELL++FGPLR F+LV+D+ETGNSKGY FC+YQDP+VTD
Sbjct: 371 LEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTD 430
Query: 355 MACASLNGLKMGDKTLTVRRATVSG-HSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGV 413
+ACA+LNG+KMGDKTLTVRRA K EQE + AQQ I +Q++ + G
Sbjct: 431 IACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG------ 484
Query: 414 ERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPS 473
+ TK++CLT+ +T D+L D+EEY EI+EDMR E GKFG L+NVVIPRPNP
Sbjct: 485 ---------TPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPD 535
Query: 474 GEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
+ TPG+GKVFLEY+D S A+S +NGRKFGGN V A YYPE
Sbjct: 536 HDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPE 579
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/405 (60%), Positives = 293/405 (72%), Gaps = 20/405 (4%)
Query: 118 FDMAPPSADGTSA---VSGQTLGINHLNQGTAQNFSLFGISQPQ-IGALSLMQVQPMTQQ 173
FDMAPP++ +A V+GQ G ++F + Q G LS+M +Q MTQQ
Sbjct: 152 FDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQ 211
Query: 174 ATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEM 233
ATRHARRVY+GGL P NEQS+ATFFS VM A+GGN+AG GD+VVNVYINHEKKFAF+EM
Sbjct: 212 ATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEM 271
Query: 234 RTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXX 293
R+VEEASNAMSLDGI+FEG V+VRRP+DYNP+LAA LGP QPSP+LNL+AV
Sbjct: 272 RSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASG 331
Query: 294 XXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVT 353
RIFVGGLPYYF E Q+RELL++FG L+ FDLV+D+ETGNSKGY FC+YQD +VT
Sbjct: 332 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 391
Query: 354 DMACASLNGLKMGDKTLTVRRATVSGH-SKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
D+ACA+LNG+KMGDKTLTVRRA K EQE++ AQQ I Q+V L+ PG
Sbjct: 392 DIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQ------PG 445
Query: 413 VERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNP 472
AT V+CLT+ +T DEL D+EEY +I+EDMR E GKFG L NVVIPRP+P
Sbjct: 446 A---------VATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSP 496
Query: 473 SGEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
+GE G+GKVFL+Y+DT S A+ +NGRKFGGN V A YYPE
Sbjct: 497 NGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPE 541
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/405 (60%), Positives = 293/405 (72%), Gaps = 20/405 (4%)
Query: 118 FDMAPPSADGTSA---VSGQTLGINHLNQGTAQNFSLFGISQPQ-IGALSLMQVQPMTQQ 173
FDMAPP++ +A V+GQ G ++F + Q G LS+M +Q MTQQ
Sbjct: 174 FDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQ 233
Query: 174 ATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEM 233
ATRHARRVY+GGL P NEQS+ATFFS VM A+GGN+AG GD+VVNVYINHEKKFAF+EM
Sbjct: 234 ATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEM 293
Query: 234 RTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXX 293
R+VEEASNAMSLDGI+FEG V+VRRP+DYNP+LAA LGP QPSP+LNL+AV
Sbjct: 294 RSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASG 353
Query: 294 XXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVT 353
RIFVGGLPYYF E Q+RELL++FG L+ FDLV+D+ETGNSKGY FC+YQD +VT
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 354 DMACASLNGLKMGDKTLTVRRATVSGH-SKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
D+ACA+LNG+KMGDKTLTVRRA K EQE++ AQQ I Q+V L+ PG
Sbjct: 414 DIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQ------PG 467
Query: 413 VERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNP 472
AT V+CLT+ +T DEL D+EEY +I+EDMR E GKFG L NVVIPRP+P
Sbjct: 468 A---------VATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSP 518
Query: 473 SGEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
+GE G+GKVFL+Y+DT S A+ +NGRKFGGN V A YYPE
Sbjct: 519 NGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPE 563
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/348 (59%), Positives = 250/348 (71%), Gaps = 20/348 (5%)
Query: 118 FDMAPPSADGTSA---VSGQTLGINHLNQGTAQNFSLFGISQPQ-IGALSLMQVQPMTQQ 173
FDMAPP++ +A V+GQ G ++F + Q G LS+M +Q MTQQ
Sbjct: 174 FDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQ 233
Query: 174 ATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEM 233
ATRHARRVY+GGL P NEQS+ATFFS VM A+GGN+AG GD+VVNVYINHEKKFAF+EM
Sbjct: 234 ATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEM 293
Query: 234 RTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXX 293
R+VEEASNAMSLDGI+FEG V+VRRP+DYNP+LAA LGP QPSP+LNL+AV
Sbjct: 294 RSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASG 353
Query: 294 XXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVT 353
RIFVGGLPYYF E Q+RELL++FG L+ FDLV+D+ETGNSKGY FC+YQD +VT
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 354 DMACASLNGLKMGDKTLTVRRATVSGH-SKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
D+ACA+LNG+KMGDKTLTVRRA K EQE++ AQQ I Q+V L+ PG
Sbjct: 414 DIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQ------PG 467
Query: 413 VERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFG 460
AT V+CLT+ +T DEL D+EEY +I+EDMR E GKFG
Sbjct: 468 A---------VATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFG 506
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/347 (59%), Positives = 249/347 (71%), Gaps = 20/347 (5%)
Query: 118 FDMAPPSADGTSA---VSGQTLGINHLNQGTAQNFSLFGISQPQ-IGALSLMQVQPMTQQ 173
FDMAPP++ +A V+GQ G ++F + Q G LS+M +Q MTQQ
Sbjct: 174 FDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQ 233
Query: 174 ATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEM 233
ATRHARRVY+GGL P NEQS+ATFFS VM A+GGN+AG GD+VVNVYINHEKKFAF+EM
Sbjct: 234 ATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEM 293
Query: 234 RTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXX 293
R+VEEASNAMSLDGI+FEG V+VRRP+DYNP+LAA LGP QPSP+LNL+AV
Sbjct: 294 RSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASG 353
Query: 294 XXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVT 353
RIFVGGLPYYF E Q+RELL++FG L+ FDLV+D+ETGNSKGY FC+YQD +VT
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 354 DMACASLNGLKMGDKTLTVRRATVSGH-SKTEQEHIFAQAQQNITMQKVALEVVGLNIPG 412
D+ACA+LNG+KMGDKTLTVRRA K EQE++ AQQ I Q+V L+ PG
Sbjct: 414 DIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQ------PG 467
Query: 413 VERVPTTIDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKF 459
AT V+CLT+ +T DEL D+EEY +I+EDMR E GKF
Sbjct: 468 A---------VATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKF 505
>AT1G60830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22395058-22395603 REVERSE LENGTH=111
Length = 111
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 73/95 (76%)
Query: 423 SATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPSGEQTPGIGK 482
+ TK++CLT+ +T D+L D+ EY +I+EDM E GKFG L+NVVIPRPNP + TPG+GK
Sbjct: 7 TPTKIVCLTQVVTADDLRDDAEYADIMEDMSQEGGKFGNLVNVVIPRPNPDHDPTPGVGK 66
Query: 483 VFLEYSDTAASFAAKSALNGRKFGGNMVTAYYYPE 517
VFLEY+D S A+S +NGRKFGGN V A YYPE
Sbjct: 67 VFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPE 101
>AT2G33435.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14166037-14169492 FORWARD LENGTH=979
Length = 979
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%)
Query: 173 QATRHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLE 232
++TR RR+Y +P +E+S+ F+ M + G N + ++ IN EK A +E
Sbjct: 872 ESTRRMRRLYAENVPDSASEKSLIECFNGYMLSSGSNHIKGSEPCISCIINKEKSQALVE 931
Query: 233 MRTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAAL 271
T ++AS A+SLDG F G ++++RRP DY T +++
Sbjct: 932 FLTPQDASAALSLDGCSFAGSNLKIRRPKDYVRTTVSSI 970
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 163/393 (41%), Gaps = 92/393 (23%)
Query: 176 RHARRVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKK---FAFLE 232
R R V+ +P E+ + FFS AG V + + ++ ++E
Sbjct: 165 RDQRTVFAYQMPLKATERDVYEFFSK---------AGKVRDVRLIMDRNSRRSKGVGYIE 215
Query: 233 MRTVEEASNAMSLDGIVFEGVSVRVRRPTDYNPTLAAA----LGPCQPSPYLNLSAVXXX 288
V A++L G +F G V V+ P++ LA + +G P+
Sbjct: 216 FYDVMSVPMAIALSGQLFLGQPVMVK-PSEAEKNLAQSNSTTVGGTGPA----------- 263
Query: 289 XXXXXXXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQ 348
+++VG L + +E Q+R++ +AFGP+ L D ETG KG+GF +
Sbjct: 264 ---------DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFV 314
Query: 349 DPAVTDMACASLNG-LKMGDKTLTVRRATVSGHSKTEQE---------------HIFAQA 392
+ A +LNG L++ +T+ V ++VS H T+ + AQ+
Sbjct: 315 QLEHSKAAQIALNGKLEIAGRTIKV--SSVSDHIGTQDSAPKSADFDDDDGGGLALNAQS 372
Query: 393 Q----QNITMQKVALEVVG-LNIPGV----------------ERVPTTIDESATK--VLC 429
+ Q + +A +VG L +PG+ +PTT S V
Sbjct: 373 RAMLMQKLDRSGIATSIVGSLGVPGLNGAAFNQPGMNPSFPTSVLPTTAIPSFVNEHVGL 432
Query: 430 LTEAITTDELMD-NEEYE-----EIVEDMRDECGKFGTLMNVVIPRPNPSGEQTPGIGKV 483
+E + + D E E EI +D+ DEC K+G + ++ + + + G V
Sbjct: 433 PSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNS--------AGFV 484
Query: 484 FLEYSDTAASFAAKSALNGRKFGGNMVTAYYYP 516
+L + A+ AA+ A++ R F M++A + P
Sbjct: 485 YLRFQSVEAAAAAQRAMHMRWFAQKMISATFMP 517
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+FVG +PY EEQ+RE+ GP+ SF LV D+ETG KGYGFC Y+D A +L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 361 NGLKMGDKTLTV 372
++ + L V
Sbjct: 71 QSYEINGRQLRV 82
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 26/196 (13%)
Query: 180 RVYIGGLPPLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFLEMRTVEEA 239
++++G LP + Q++A F T + + N + + F F+ M TVEEA
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTV------EISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 240 SNAMSLDGIVFEGVSVRVRRPTDYNPTLAAALGPCQPSPYLNLSAVXXXXXXXXXXXXXX 299
A+ F V RR T + QP Y
Sbjct: 168 EKAVEK----FNSFEVNGRRLTVNRAAPRGSRPERQPRVY----------------DAAF 207
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
RI+VG LP+ ++ L G + +V D+ETG S+G+GF + ++A A+
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 360 LNGLKMGDKTLTVRRA 375
L+G + + + V A
Sbjct: 268 LDGQNLEGRAIKVNVA 283
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 410 IPGVERVPTTIDESATKVLCLTEAITTDELMDNEEY--EEIVEDMRDECGKFGTLMNVVI 467
IPGV +P D CL D + E+ E+I ED+++EC KFG L ++ +
Sbjct: 449 IPGV--IPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFV 506
Query: 468 PRPNPSGEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYY 514
+ + +G V+L + + A+ A+ AL+GR F G M+TA Y
Sbjct: 507 DKNS--------VGFVYLRFENAQAAIGAQRALHGRWFAGKMITATY 545
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 410 IPGVERVPTTIDESATKVLCLTEAITTDELMDNEEY--EEIVEDMRDECGKFGTLMNVVI 467
IPGV +P D CL D + E+ E+I ED+++EC KFG L ++ +
Sbjct: 498 IPGV--IPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFV 555
Query: 468 PRPNPSGEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYY 514
+ + +G V+L + + A+ A+ AL+GR F G M+TA Y
Sbjct: 556 DKNS--------VGFVYLRFENAQAAIGAQRALHGRWFAGKMITATY 594
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 410 IPGVERVPTTIDESATKVLCLTEAITTDELMDNEEY--EEIVEDMRDECGKFGTLMNVVI 467
IPGV +P D CL D + E+ E+I ED+++EC KFG L ++ +
Sbjct: 487 IPGV--IPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFV 544
Query: 468 PRPNPSGEQTPGIGKVFLEYSDTAASFAAKSALNGRKFGGNMVTAYY 514
+ + +G V+L + + A+ A+ AL+GR F G M+TA Y
Sbjct: 545 DKNS--------VGFVYLRFENAQAAIGAQRALHGRWFAGKMITATY 583
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGG+P +++ +E FG L+ ++RD TG S+G+GF Y+ + D A
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 360 LNGLKMGDKTLTVRRA 375
N +++ + +++A
Sbjct: 191 GNRIELSGTQVEIKKA 206
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGG+P E+++++ +G + ++RD ET S+G+GF I+ V D +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 360 LNGLKMGDKTLTVRRA 375
N + M D + +++A
Sbjct: 170 GNMIDMADTQVEIKKA 185
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+F+GGLP EE +R+L + G + L++D+++G+SKGY F ++ V A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 361 NGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQ--KVALEVVGLNIPGVERVPT 418
+ + KT+ R ++ S+T+ +N T + +E VG PGVE +
Sbjct: 178 HSKEFKGKTI---RCSL---SETKNRLFIGNIPKNWTEDEFRKVIEDVG---PGVENIEL 228
Query: 419 TIDESAT 425
D + T
Sbjct: 229 IKDPTNT 235
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+F+GGLP EE +R+L + G + L++D+++G+SKGY F ++ V A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 361 NGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQ--KVALEVVGLNIPGVERVPT 418
+ + KT+ R ++ S+T+ +N T + +E VG PGVE +
Sbjct: 178 HSKEFKGKTI---RCSL---SETKNRLFIGNIPKNWTEDEFRKVIEDVG---PGVENIEL 228
Query: 419 TIDESAT 425
D + T
Sbjct: 229 IKDPTNT 235
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
R F+GGL + ++ +R+ + +G L +V DK +G S+G+GF + + D A A+
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 360 LNGLKMGDKTLTVRRA 375
+NG+ + +T+TV +A
Sbjct: 68 MNGMDLDGRTITVDKA 83
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
++VGG+P+ E + + +G + +L+RDK TG SKG+ F Y+D T +A +L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 361 NGLKMGDKTLTV 372
NG + +T+ V
Sbjct: 98 NGALVLGRTIKV 109
>AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1323700-1325486 FORWARD LENGTH=222
Length = 222
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+++G +P+ F E +I FG ++ + R+K+TG SK +GF ++DP V ++A ++
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 361 NGLKMGDKTLTV 372
N + + L V
Sbjct: 122 NDYLLMEHMLKV 133
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGG+P E+++++ +G + ++RD ET S+G+GF I+ V D +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 360 LNGLKMGDKTLTVRR 374
N + M D +++ +
Sbjct: 170 GNMIDMADTQVSLYK 184
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
R+FV GLPY EE++ E FG + LV DK+T + +G F +Y P MA
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 360 LNGLKMGDKTLTV 372
L+ L +TL +
Sbjct: 288 LDKLPFQGRTLHI 300
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+++G LP ++ + L +FG + +++D+ TG SKGYGF Y D + + A ++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 361 NGLKMGDKTLTVRRATVS 378
NG + +TL VR A S
Sbjct: 542 NGYRFEGRTLAVRIAGKS 559
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+++G LP ++ + L +FG + +++D+ TG SKGYGF Y D + + A ++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 361 NGLKMGDKTLTVRRATVS 378
NG + +TL VR A S
Sbjct: 542 NGYRFEGRTLAVRIAGKS 559
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+++G LP ++ + L +FG + +++D+ TG SKGYGF Y D + + A ++
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 361 NGLKMGDKTLTVRRATVS 378
NG + +TL VR A S
Sbjct: 542 NGYRFEGRTLAVRIAGKS 559
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACA 358
++FVGGL + E +R+ + +G + ++ DK TG SKGYGF ++DP ACA
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
+F+GGLP EE +R+L + G + L++D+++G+SKGY F ++ V A L
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 157
Query: 361 NGLKMGDKTL 370
+ + KT+
Sbjct: 158 HSKEFKGKTI 167
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
++FVGG+ + E+++RE +G + ++RDK TG +G+GF I+ DP+V D
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 360 LNGLKMGDKTLTVRRATVSGHSKTEQE 386
+ + + + V+RA S+ EQ+
Sbjct: 67 KHSIDT--REVDVKRAM----SREEQQ 87
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGGLP E++++ +G + ++ D TG S+G+GF +Q D +
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 360 LNGLKMGDKTLTVRRA 375
++GDK + ++RA
Sbjct: 218 GKVHELGDKQVEIKRA 233
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACASL 360
++V LP E+++R+ FG + S ++RD ++GNS+ +GF ++ A +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 361 NGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERVPTTI 420
NG+ +GD L V RA + E F Q ER+
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQ----------------------ERI-NRF 326
Query: 421 DESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPSGEQTPGI 480
++S L L D+ +D+E+ +E M E G T V++ NP G + G
Sbjct: 327 EKSQGANLYLK---NLDDSVDDEKLKE----MFSEYGNV-TSSKVML---NPQG-MSRGF 374
Query: 481 GKVFLEYSDTAASFAAKSALNGRKFG 506
G F+ YS+ + A S +NG+ G
Sbjct: 375 G--FVAYSNPEEALRALSEMNGKMIG 398
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMAC 357
+I+VGGLP+ E +R + FG + ++V D+ETG S+GYGF ++D AC
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRAC 110
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
R FVGGL + +E ++ FG + ++ D+E+G S+G+GF ++D A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 360 LNGLKMGDKTLTVRRATVSG 379
+NG ++ + +TV A G
Sbjct: 67 MNGKELDGRVITVNEAQSRG 86
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 39/58 (67%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMAC 357
++F+GG+ + EE+++E +FG + +++D+ TG ++G+GF ++ DPAV ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 39/58 (67%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMAC 357
++F+GG+ + EE+++E +FG + +++D+ TG ++G+GF ++ DPAV ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
R FVGGL + +E ++ FG + ++ D+E+G S+G+GF ++D A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 360 LNGLKMGDKTLTVRRA 375
+NG ++ + +TV A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
R FVGGL + +E ++ FG + ++ D+E+G S+G+GF ++D A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 360 LNGLKMGDKTLTVRRA 375
+NG ++ + +TV A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 41/213 (19%)
Query: 174 ATRHARRVYIGGLP-PLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHE---KKFA 229
++ ARRVYIG +P +TNEQ H GA + V +Y + ++F
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEH----------GAVEKVQVMYDKYSGRSRRFG 120
Query: 230 FLEMRTVEEASNAM-SLDGIVFEGVSVRV---RRPTDYNPTLAAALGPCQP---SPYLNL 282
F M++VE+A+ + L+G EG ++V +P +P L+ SPY
Sbjct: 121 FATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPY--- 177
Query: 283 SAVXXXXXXXXXXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGY 342
+++VG L +E + L G + S + R T S G+
Sbjct: 178 -----------------KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGF 220
Query: 343 GFCIYQDPAVTDMACASLNGLKMGDKTLTVRRA 375
GF + + A +LN + + + V +A
Sbjct: 221 GFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 41/213 (19%)
Query: 174 ATRHARRVYIGGLP-PLTNEQSIATFFSHVMTAIGGNSAGAGDSVVNVYINHE---KKFA 229
++ ARRVYIG +P +TNEQ H GA + V +Y + ++F
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEH----------GAVEKVQVMYDKYSGRSRRFG 120
Query: 230 FLEMRTVEEASNAM-SLDGIVFEGVSVRV---RRPTDYNPTLAAALGPCQP---SPYLNL 282
F M++VE+A+ + L+G EG ++V +P +P L+ SPY
Sbjct: 121 FATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPY--- 177
Query: 283 SAVXXXXXXXXXXXXXXRIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGY 342
+++VG L +E + L G + S + R T S G+
Sbjct: 178 -----------------KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGF 220
Query: 343 GFCIYQDPAVTDMACASLNGLKMGDKTLTVRRA 375
GF + + A +LN + + + V +A
Sbjct: 221 GFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
RIFVGGL + E Q+ +G + ++ ++TG +G+GF + D D A
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 360 LNGLKMGDKTLTVRRA 375
++G ++G+K ++V +A
Sbjct: 73 MHGRELGNKVISVNKA 88
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
RIFVGGL + E Q+ +G + ++ ++TG +G+GF + D D A
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 360 LNGLKMGDKTLTVRRA 375
++G ++G+K ++V +A
Sbjct: 73 MHGRELGNKVISVNKA 88
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
R+F G L ++ + + F ++RDK TG +KGYGF + +PA A
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 360 LNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVV 406
+NG +G++ + +R++ S +T+QE Q + QK + +
Sbjct: 198 MNGKYVGNRPIKLRKS--SWKERTDQEAAERQKHHSNKKQKTVKKSI 242
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 38/55 (69%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
++F+GG+ + +E+++R+ +FG + +++D+ TG ++G+GF ++ DP V +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 38/55 (69%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
++F+GG+ + +E+++R+ +FG + +++D+ TG ++G+GF ++ DP V +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 38/55 (69%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTD 354
++F+GG+ + +E+++R+ +FG + +++D+ TG ++G+GF ++ DP V +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 83/211 (39%), Gaps = 29/211 (13%)
Query: 301 IFVGGLPYYFAEEQIRELLQAFGP-LRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+FVG L + + E P ++S +V D TG SKGYGF + D A
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 360 LNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERVPTT 419
+NG ++ + V AT +Q+H + Q V L G G +
Sbjct: 264 MNGAYCSNRQMRVGIATPKRAIANQQQH---------SSQAVIL-AGGHGSNGSMGYGSQ 313
Query: 420 IDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPSGEQTPG 479
D +T I D I ED+R +FG +++V IP G
Sbjct: 314 SDGESTNATIFVGGIDPD---------VIDEDLRQPFSQFGEVVSVKIP---------VG 355
Query: 480 IGKVFLEYSDTAASFAAKSALNGRKFGGNMV 510
G F++++D ++ A +LNG G N V
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTV 386
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMAC 357
++FVGGL + E +R +G + ++ DK TG SKGYGF ++DP AC
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMAC 357
++FVGGL + E +R +G + ++ DK TG SKGYGF ++DP AC
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+IFVGGL + + +R + FG + ++ DK TG SKGYGF +++ AC +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 360 LN 361
+N
Sbjct: 83 MN 84
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 43/211 (20%)
Query: 301 IFVGGLPYYFAEEQIRELLQA-FGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
+FVG L + + E +A + ++ +V D+ TG SKGYGF + D + A
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 360 LNGLKMGDKTLTVRRATVSGHSKTEQEHIFAQAQQNITMQKVALEVVGLNIPGVERVPTT 419
+NG + + R + + K +TMQ + + N + TT
Sbjct: 235 MNGQYCSSRPM---RTGPAANKKP------------LTMQPASYQNTQGNSGESDPTNTT 279
Query: 420 IDESATKVLCLTEAITTDELMDNEEYEEIVEDMRDECGKFGTLMNVVIPRPNPSGEQTPG 479
I V + +++T D D++ G+FG L++V IP G
Sbjct: 280 I-----FVGAVDQSVTED-------------DLKSVFGQFGELVHVKIPAGKRCG----- 316
Query: 480 IGKVFLEYSDTAASFAAKSALNGRKFGGNMV 510
F++Y++ A + A S LNG + GG +
Sbjct: 317 ----FVQYANRACAEQALSVLNGTQLGGQSI 343
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
R FVGGL + + + +G + ++ D+ETG S+G+GF ++D A
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 360 LNGLKMGDKTLTVRRA 375
+NG + +++TV A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
++F+GG+ Y E+ +RE +G + ++ D+ETG S+G+GF + A +
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 360 LNGLKMGDKTLTVRRA 375
L+G + + + V A
Sbjct: 101 LDGRDLHGRVVKVNYA 116
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 300 RIFVGGLPYYFAEEQIRELLQAFGPLRSFDLVRDKETGNSKGYGFCIYQDPAVTDMACAS 359
RIFVGGL + + FG + ++ +++TG S+G+GF + D D +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 360 LNGLKMGDKTLTVRRA 375
++G GD+ ++V RA
Sbjct: 68 MHGRDFGDRVISVNRA 83