Miyakogusa Predicted Gene

Lj6g3v2043260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2043260.1 tr|B5TR43|B5TR43_MALDO F-box protein FB1 OS=Malus
domestica PE=2 SV=1,29.51,2e-17,seg,NULL; F_box_assoc_1: F-box protein
interaction domain,F-box associated interaction
domain,gene.g67346.t1.1
         (336 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52320.1 | Symbols:  | F-box and associated interaction domai...    51   1e-06

>AT3G52320.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:19403020-19404192
           REVERSE LENGTH=390
          Length = 390

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 28/225 (12%)

Query: 73  SCSNGLVCLYSDFHCGREIALCNPTTRDVKFLPISNLVTEVKDGMVLGVGMGHDYYKIDD 132
           + + GL+C    +  GR + +CNP+TR +  LPI    T V +        GHD +  D+
Sbjct: 125 NAARGLLC----YRTGRRVKVCNPSTRQIVELPIMRSKTNVWN------WFGHDPFH-DE 173

Query: 133 YKVVRMWISYLECRCKKYIV--EEYCLST---KSWRIIDSANPYCCDFEASCFAMHFDGF 187
           YKV+ +   + E   ++ +V  E   L      SWR   S +     F      M  DG 
Sbjct: 174 YKVLSL---FWEVTKEQTVVRSEHQVLVLGVGASWRNTKSHHTPHRPFHPYSRGMTIDGV 230

Query: 188 YFWWAKLQDSSPVVVALDVGGGYFRKVHLPKRADIGSESGRYLGVLNGFVSLVCRDDRHS 247
            ++ A+   +  V+++ D+    F  + LP      +    Y G +       C+  R +
Sbjct: 231 LYYSARTDANRCVLMSFDLSSEEFNLIELPFENWSRTIHMNYQGKVA-----TCQYMRLA 285

Query: 248 NNDNLDIWVIDGAVFNSCTSWTKLRTLNLAPCTPLTFWKGKELLV 292
           ++  +D+ V++ A     + W+  +T  L P + + F  G  L+V
Sbjct: 286 SDGFVDVCVLEDA---DKSQWSNKKTFVL-PISQMNFVHGDRLVV 326