Miyakogusa Predicted Gene

Lj6g3v2043170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2043170.1 Non Chatacterized Hit- tr|Q67YU2|Q67YU2_ARATH
Putative uncharacterized protein At4g21720
OS=Arabidop,62.32,1e-17,seg,NULL,CUFF.60567.1
         (148 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21720.1 | Symbols:  | unknown protein; Has 2692 Blast hits t...   162   9e-41
AT4G21720.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    91   4e-19

>AT4G21720.1 | Symbols:  | unknown protein; Has 2692 Blast hits to
           975 proteins in 186 species: Archae - 4; Bacteria - 460;
           Metazoa - 658; Fungi - 93; Plants - 1089; Viruses - 100;
           Other Eukaryotes - 288 (source: NCBI BLink). |
           chr4:11542561-11544274 FORWARD LENGTH=139
          Length = 139

 Score =  162 bits (409), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 87/102 (85%)

Query: 14  MMPQQWASPCGNQCTHKYAALTQIPWRVFCKKGCNSDGETWEECLEECDHICYKDPVLKD 73
           M+PQQW  PCG++CT+KY+A TQ+PWRVFCKKGC++D ++WE+C+ +C  ICYKDPVLKD
Sbjct: 1   MIPQQWTPPCGSKCTNKYSAFTQLPWRVFCKKGCDADSDSWEDCVGDCSEICYKDPVLKD 60

Query: 74  QKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQEKAEKI 115
           + W+A IDRSPG A YSEECFHACV+GCGYKF+V+ E   K+
Sbjct: 61  RPWTAVIDRSPGDAKYSEECFHACVAGCGYKFDVEAEIVNKV 102


>AT4G21720.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: leaf whorl,
           sepal, male gametophyte, root, flower; EXPRESSED DURING:
           M germinated pollen stage, 4 anthesis, petal
           differentiation and expansion stage. |
           chr4:11543762-11544274 FORWARD LENGTH=107
          Length = 107

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 47/58 (81%)

Query: 58  LEECDHICYKDPVLKDQKWSAYIDRSPGAASYSEECFHACVSGCGYKFEVQQEKAEKI 115
           + +C  ICYKDPVLKD+ W+A IDRSPG A YSEECFHACV+GCGYKF+V+ E   K+
Sbjct: 13  VGDCSEICYKDPVLKDRPWTAVIDRSPGDAKYSEECFHACVAGCGYKFDVEAEIVNKV 70