Miyakogusa Predicted Gene

Lj6g3v2019730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2019730.1 Non Chatacterized Hit- tr|I1JZZ5|I1JZZ5_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,36.91,8e-19,HLH,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-binding domain,Helix-loop-helix domain; coile,CUFF.60532.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   137   3e-33
AT1G10585.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    70   7e-13
AT5G51780.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    52   2e-07
AT1G62975.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    49   2e-06
AT1G10586.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    47   8e-06

>AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:11215259-11216212 FORWARD
           LENGTH=190
          Length = 190

 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 10/180 (5%)

Query: 3   NNPSSSRVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQVN 62
           N   S  VDRK +E+NRR QM++LY +L SL+ H +S E ++LPDQL+EA NYIK+LQVN
Sbjct: 7   NTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTEPLTLPDQLDEAANYIKKLQVN 66

Query: 63  LEKMKEKKNTLLG---IERPNVMSLKEGPSMGL-----KSPKIEIQQMGSALDVVLITGS 114
           +EK +E+K  L+    +E+ N +      S        K PKIEIQ+ GS   + L+T  
Sbjct: 67  VEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSL 126

Query: 115 DCQFMFNETIRVLHEE-GVDVVNASYKVIEGSAFHSIHCLVTGSANVAE-RISERLNKFI 172
           + +FMF E IRVL EE G ++ +A Y +++ + FH++HC V      A  +I ERL K +
Sbjct: 127 EHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYGARSQIPERLEKIV 186


>AT1G10585.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:3494115-3495104 REVERSE
           LENGTH=181
          Length = 181

 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 14/182 (7%)

Query: 2   DNNPSSSRVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQV 61
           + N SS R  R + E++RR +M+ L+  L+S   H +    + +P  +++AT+Y+ +L+ 
Sbjct: 9   EGNSSSLREQRNLREKDRRMRMKHLFSILSS---HVSPTRKLPVPHLIDQATSYMIQLKE 65

Query: 62  NLEKMKEKKNTLLGIERPNVMSLKEGPSMGLKSPKIEIQQMGSALDVVLITGSDCQ-FMF 120
           N+  +KEKK TLL  E  N   L EG  +    PK+ I+   S +++ LI   + +  M 
Sbjct: 66  NVNYLKEKKRTLLQGELGN---LYEGSFL---LPKLSIRSRDSTIEMNLIMDLNMKRVML 119

Query: 121 NETIRVLHEEGVDVVNASYKVIEGSAFHSI--HCLVTGSANVAERISERLNKFIYGSSYI 178
           +E + +  EEG  V++A+ + +     ++I    +++       RI ER+ K IYG  YI
Sbjct: 120 HELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERVRKIIYG--YI 177

Query: 179 TF 180
            F
Sbjct: 178 YF 179


>AT5G51780.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:21034879-21036446 FORWARD
           LENGTH=174
          Length = 174

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 16  ERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQVNLEKMKEKKNTLLG 75
           ER RR +M +LY  L SL+     K   S  DQ+ EA NYIK LQ  ++++  +++ L+ 
Sbjct: 10  ERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLMV 69

Query: 76  IERPNVMS-----LKEGPSMGLKSPKIEIQQMGSALDVVLITGSDC---QFMFNETIRVL 127
           + R +++       KE   M      + ++Q    ++++L   S C   Q  F+  ++VL
Sbjct: 70  LSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIML--SSRCCGGQPRFSSVLQVL 127

Query: 128 HEEGVDVVNASYKVIEGSAFHSIHCLVTGSA 158
            E G+ ++N+   +++    ++I   V   A
Sbjct: 128 SEYGLCLLNSISSIVDDRLVYTIQAEVNDMA 158


>AT1G62975.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:23328901-23330522 FORWARD
           LENGTH=259
          Length = 259

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 45/70 (64%)

Query: 2   DNNPSSSRVDRKVIERNRRNQMRTLYRKLNSLVLHQTSKEAISLPDQLEEATNYIKRLQV 61
           D++  S ++  + IER RR ++ +L+++L +L+  Q  +   S  D + +A NYIK LQ+
Sbjct: 68  DDDRESKKMKHRDIERQRRQEVSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQI 127

Query: 62  NLEKMKEKKN 71
            ++++ EK+N
Sbjct: 128 KIKELNEKRN 137


>AT1G10586.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:3497131-3499396 REVERSE
           LENGTH=174
          Length = 174

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 26/181 (14%)

Query: 2   DNNPSSSRVDRKVIERNRRNQMRTLYRKLNS-------LVLHQTSKEAISLPDQLEEATN 54
           + + SS R  R + E+ RR +M+ L+  L+S       L + Q   +A+S   QL+E  N
Sbjct: 9   EGSASSLREQRNLREKERRMRMKHLFSILSSHVSPTRRLPVPQLIDQAVSYMIQLKEKVN 68

Query: 55  YIKRLQVNLEKMKEKKNTLLGIERPNVMSLKEGPSMGLKSPKIEIQQMGSALDVVLITGS 114
           Y          + E K  +LG E   V +  EG S+    PK+ I+ + S +++ L+   
Sbjct: 69  Y----------LNEMKRRMLGGE---VKNRSEGSSL---LPKLSIRSLDSIIEMNLVMDL 112

Query: 115 DCQ-FMFNETIRVLHEEGVDVVNASYKVIEGSAFHSI--HCLVTGSANVAERISERLNKF 171
           + +  M ++ + V  EEG  V++A+ + +    F++I    ++        RI ERL   
Sbjct: 113 NMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERLRDI 172

Query: 172 I 172
           I
Sbjct: 173 I 173