Miyakogusa Predicted Gene

Lj6g3v2006970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006970.1 Non Chatacterized Hit- tr|I3T3J6|I3T3J6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,63.04,3e-17,seg,NULL; coiled-coil,NULL,CUFF.60502.1
         (292 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28400.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    52   5e-07

>AT1G28400.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 22 plant structures; EXPRESSED
          DURING: 13 growth stages; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT2G33850.1);
          Has 45374 Blast hits to 18870 proteins in 668 species:
          Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi -
          1038; Plants - 174; Viruses - 64; Other Eukaryotes -
          41375 (source: NCBI BLink). | chr1:9972732-9973739
          REVERSE LENGTH=335
          Length = 335

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 9/86 (10%)

Query: 4  FSNYISFLFF--TALLLPLQIIARESQFFSKVTHFNNNNNVKEAELP-----NPNKDEQV 56
          FS   S LFF  T +LL  QI AR+S FF K    +  +    + +P         +E V
Sbjct: 3  FSTRGSLLFFFTTLVLLSTQIHARDSYFFGKFHRESPKDQNPNSFIPLETSEKTTVEESV 62

Query: 57 TNKPEQQ--PAFIPETENSYGLYGHD 80
           NK EQ+  P F+PE+ N YGLYGH+
Sbjct: 63 LNKKEQEQDPTFVPESGNGYGLYGHE 88