Miyakogusa Predicted Gene

Lj6g3v2006670.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006670.3 Non Chatacterized Hit- tr|B8B8L7|B8B8L7_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,26.3,2e-18,seg,NULL,CUFF.60507.3
         (490 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44180.1 | Symbols:  | Homeodomain-like transcriptional regul...   290   2e-78
AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460 ...   273   3e-73
AT5G44180.2 | Symbols:  | Homeodomain-like transcriptional regul...   119   4e-27
AT4G12750.1 | Symbols:  | Homeodomain-like transcriptional regul...   105   5e-23
AT5G08630.1 | Symbols:  | DDT domain-containing protein | chr5:2...    55   8e-08

>AT5G44180.1 | Symbols:  | Homeodomain-like transcriptional regulator
            | chr5:17783172-17789872 FORWARD LENGTH=1694
          Length = 1694

 Score =  290 bits (742), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 193/500 (38%), Positives = 257/500 (51%), Gaps = 66/500 (13%)

Query: 1    MWADAQTDKVRLKDDNISKSDLASHIGNKVEAQYTYPAVESNQSPLLDXXXXXXXXEASP 60
            MW + Q DK R K++++ +++  S+   K       PA  + +S   D          S 
Sbjct: 954  MWGEVQLDK-RWKEESLIRANYLSYPTAKPGLNIATPASGNQESSSADVTPISSQDPVSL 1012

Query: 61   GTADKQKGASIAQSLPSEKSSLVQDFCPGTGPDNPQIQVPVQCSK-RSRSQLKSYIAHKA 119
               D         ++ +  S  +Q+  PG      Q Q      + R R+QLK+Y+ +KA
Sbjct: 1013 PQID-------VNNVIAGPSLQLQENVPGVENLQYQQQQGYTADRERLRAQLKAYVGYKA 1065

Query: 120  EETCVYRSLPLGQDRRRNRYWQFAASASSNDPGSGRIFVEQHDGNWRLIDSGEAFDNLLT 179
            EE  VYRSLPLGQDRRRNRYW+F+ASAS NDPG GRIFVE  DG WRLIDS EAFD L+ 
Sbjct: 1066 EELYVYRSLPLGQDRRRNRYWRFSASASRNDPGCGRIFVELQDGRWRLIDSEEAFDYLVK 1125

Query: 180  SLDSRGIRESHLHLMLQKIEKSFKENVLKNTPIIGGSDEVSIEKEAKETHLIPDRHDSSS 239
            SLD RG+RESHLH ML KIE SFKE + +N     G   +S                   
Sbjct: 1126 SLDVRGVRESHLHFMLLKIEASFKEALRRNVAANPGVCSIS------------------- 1166

Query: 240  SALHGLNPDISETSLSFKIE-------------------------ECYNSSILCATKYGI 274
                 L+ D +E S +FKIE                            + S L A KYG 
Sbjct: 1167 ---SSLDSDTAEISTTFKIELGDSNAVERCSVLQRFHSFEKWMWDNMLHPSALSAFKYGA 1223

Query: 275  KRCKALVDICDICLDPYFVEDSHCNSCHRTFSS-NIG-FNFSKHAFQCGDELSKDIC--I 330
            K+   L  IC IC + +FV D  C SC +  +  ++G   F++   Q GD L +     I
Sbjct: 1224 KQSSPLFRICRICAELHFVGDICCPSCGQMHAGPDVGELCFAEQVAQLGDNLRRGDTGFI 1283

Query: 331  LENSXXX--XXXXXXXXXACMEASVLSEGFGTNWTNDIRKQWGVKLSKSSSVEELWQILV 388
            L +S              A +EAS+  EG    WT ++RK WG+KL  SSS E+L+Q+L 
Sbjct: 1284 LRSSILSPLRIRLLKVQLALVEASLPPEGLEAFWTENLRKSWGMKLLSSSSHEDLYQVLT 1343

Query: 389  IFERALRRDFLSSNFSTTDELLGSTSISQSSAHATTDPESVAVLPWVPQTSAALSLRLFE 448
              E AL+RDFLSSNF TT ELLG     Q  A A+     V VLPW+P+T+  ++LRLF+
Sbjct: 1344 TLEAALKRDFLSSNFETTSELLG----LQEGALASDLTCGVNVLPWIPKTAGGVALRLFD 1399

Query: 449  FDSFISYVKLEKVEPCEEKD 468
            FDS I Y   +  +P ++K+
Sbjct: 1400 FDSSIVYTPDQNNDPLKDKE 1419


>AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460
            FORWARD LENGTH=1705
          Length = 1705

 Score =  273 bits (697), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 270/518 (52%), Gaps = 83/518 (16%)

Query: 1    MWADAQTDKVRLKDDNISKSDLASHIGNKVEAQYTYPAVESN--QSPLLDXXXXXXXXEA 58
            MWA+AQ D   ++D  + K DL +   +K E+    P ++S+  +    D        E 
Sbjct: 988  MWAEAQLDNSCMRD--VLKLDLQNLASSKTESTIGLPIIQSSTRERDSFDRDPSQLLDET 1045

Query: 59   SP--GTADKQKGASIAQSLPSEKSSLVQDFCPGTGPDNPQIQVPVQCSKRSRSQLKSYIA 116
             P    ++    +S  ++L ++ +++ Q+                  SKRSRSQLKSYI 
Sbjct: 1046 KPLEDLSNDLHKSSAERALINQDANISQENY---------------ASKRSRSQLKSYIG 1090

Query: 117  HKAEETCVYRSLPLGQDRRRNRYWQFAASASSNDPGSGRIFVEQHDGNWRLIDSGEAFDN 176
            HKAEE   YRSLPLGQDRR NRYW FA S S +DP S  +FVE HDG W LIDS EAFD 
Sbjct: 1091 HKAEEVYPYRSLPLGQDRRHNRYWHFAVSVSKSDPCSRLLFVELHDGKWLLIDSEEAFDI 1150

Query: 177  LLTSLDSRGIRESHLHLMLQKIEKSFKENVLKNTPIIGGSDEVSIEKEAKETHLIPDRHD 236
            L+ SLD RGIRESHL +MLQKIE SFKEN  K+  +   +    + +++   H   D   
Sbjct: 1151 LVASLDMRGIRESHLRIMLQKIEGSFKENACKDIKL---ARNPFLTEKSVVNHSPTDSVS 1207

Query: 237  SSSSALHGLNPDISETSLSFKIE------------------------ECYNSSILCATKY 272
             SSSA+ G N D  ETS S +++                        E Y+S   CA KY
Sbjct: 1208 PSSSAISGSNSDSMETSTSIRVDLGRNDTENKNLSKRFHDFQRWMWTETYSSLPSCARKY 1267

Query: 273  GIKRCKALVDICDICLDPYFVEDSHCNSCHRTF----SSNI---GFNFSKHAFQCGDELS 325
            G KR + L+  CD C+  Y  E + C+SCH+      SS I   G   S   F  G  L 
Sbjct: 1268 GKKRSE-LLATCDACVASYLSEYTFCSSCHQRLDVVDSSEILDSGLAVSPLPF--GVRLL 1324

Query: 326  KDICILENSXXXXXXXXXXXXACMEASVLSEGFGTNWTNDIRKQWGVKLSKSSSVEELWQ 385
            K + +                  +EASV  E   + WT D RK+WG +L+ SSS  EL Q
Sbjct: 1325 KPLLVF-----------------LEASVPDEALESFWTEDQRKKWGFRLNTSSSPGELLQ 1367

Query: 386  ILVIFERALRRDFLSSNFSTTDELLGSTSISQSSAHATTDPE-SVAVLPWVPQTSAALSL 444
            +L   E A++++ LSSNF +  ELLG       +A+A  D + SV VLPW+P+T +A++L
Sbjct: 1368 VLTSLESAIKKESLSSNFMSAKELLG-------AANAEADDQGSVDVLPWIPKTVSAVAL 1420

Query: 445  RLFEFDSFISYVKLEKVEPCEEKDGNVCTLPSRYTPFK 482
            RL E D+ I YVK EK E   E +    +L  R +PFK
Sbjct: 1421 RLSELDASIIYVKPEKPEVIPEDENEQISLFPRDSPFK 1458


>AT5G44180.2 | Symbols:  | Homeodomain-like transcriptional regulator
            | chr5:17783172-17789872 FORWARD LENGTH=1507
          Length = 1507

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 99/176 (56%), Gaps = 13/176 (7%)

Query: 1    MWADAQTDKVRLKDDNISKSDLASHIGNKVEAQYTYPAVESNQSPLLDXXXXXXXXEASP 60
            MW + Q DK R K++++ +++  S+   K       PA  + +S   D          S 
Sbjct: 954  MWGEVQLDK-RWKEESLIRANYLSYPTAKPGLNIATPASGNQESSSADVTPISSQDPVSL 1012

Query: 61   GTADKQKGASIAQSLPSEKSSLVQDFCPGTGPDNPQIQVPVQCS---KRSRSQLKSYIAH 117
               D         ++ +  S  +Q+  PG   +N Q Q     +   +R R+QLK+Y+ +
Sbjct: 1013 PQID-------VNNVIAGPSLQLQENVPGV--ENLQYQQQQGYTADRERLRAQLKAYVGY 1063

Query: 118  KAEETCVYRSLPLGQDRRRNRYWQFAASASSNDPGSGRIFVEQHDGNWRLIDSGEA 173
            KAEE  VYRSLPLGQDRRRNRYW+F+ASAS NDPG GRIFVE  DG WRLIDS EA
Sbjct: 1064 KAEELYVYRSLPLGQDRRRNRYWRFSASASRNDPGCGRIFVELQDGRWRLIDSEEA 1119



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 4/119 (3%)

Query: 350  EASVLSEGFGTNWTNDIRKQWGVKLSKSSSVEELWQILVIFERALRRDFLSSNFSTTDEL 409
            EAS+  EG    WT ++RK WG+KL  SSS E+L+Q+L   E AL+RDFLSSNF TT EL
Sbjct: 1118 EASLPPEGLEAFWTENLRKSWGMKLLSSSSHEDLYQVLTTLEAALKRDFLSSNFETTSEL 1177

Query: 410  LGSTSISQSSAHATTDPESVAVLPWVPQTSAALSLRLFEFDSFISYVKLEKVEPCEEKD 468
            LG     Q  A A+     V VLPW+P+T+  ++LRLF+FDS I Y   +  +P ++K+
Sbjct: 1178 LG----LQEGALASDLTCGVNVLPWIPKTAGGVALRLFDFDSSIVYTPDQNNDPLKDKE 1232


>AT4G12750.1 | Symbols:  | Homeodomain-like transcriptional regulator
            | chr4:7498009-7503920 REVERSE LENGTH=1131
          Length = 1131

 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 166/381 (43%), Gaps = 43/381 (11%)

Query: 116  AHKAEETCVYRSLPLGQDRRRNRYWQFAASASSNDPGSGRIFVEQ-HDGNWRLIDSGEAF 174
             ++A      +S+ LG DRR NRYW F  + ++NDPG   +F E   DG+W +I++ EA 
Sbjct: 758  GNRANNVHPMQSVYLGSDRRFNRYWLFLGTCNANDPGHRCVFFESSEDGHWEVINNKEAL 817

Query: 175  DNLLTSLDSRGIRESHLHLMLQKIEKSFKENVLKN----------TPII--GGSDEVS-I 221
              LL+ LD RG RE+ L   L+K E    + +L            T I+    S  VS I
Sbjct: 818  RALLSVLDDRGRREARLIESLEKRESFLCQAMLSRQVTQSETAHFTDIVREDSSSPVSDI 877

Query: 222  EKEAKETHLIPDRHDSSSSALHGLNPDISETSLSFKIEECYNSSILCATKYGIK----RC 277
            +       +  D+  S  +A+        E SL + + + ++  I     + +     R 
Sbjct: 878  DNNLCLNEIANDQFSSQHAAIVFEIGSKREKSLLWSLIQEFDDWIWANFNFNLNSVKHRR 937

Query: 278  KALVDI---CDICLDPYFVEDSHCNSCHRTFSSNIGF--NFSKHAFQCGDELSKDICILE 332
            ++ +D    C  C D Y+ ++ HC  CH TF  +I     ++ HA  C  +   D     
Sbjct: 938  RSYLDSLTRCKSCHDLYWRDEKHCKICHATFEVDIDLEERYAIHAATCMRKEECDTFPDH 997

Query: 333  NSXXXXXXXXXXXXACMEASVLSEGFGTNWTNDIRKQWGVKLSKSSSVEELWQILVIFER 392
                            +E+++  +     W     + W  +L +SSSV E+ Q++  F  
Sbjct: 998  KVLSSQLQSLKAAVYAIESAMPEDALIGAWRKSAHRLWAKRLRRSSSVSEITQVIGDFVG 1057

Query: 393  ALRRDFLSSNFSTTDELLGSTSISQSSAHATTDPESVAVLPWVPQTSAALSLRLFEFDSF 452
            A+  ++L         L+G               E +   P +PQT++A++L L + D+ 
Sbjct: 1058 AINEEWLWHCSDQGQTLMG---------------EIINCFPSMPQTTSAIALWLVKLDTL 1102

Query: 453  IS-YVKLEKVEPCEEKDGNVC 472
            I+ YV  EK  P  E+D  +C
Sbjct: 1103 IAPYV--EKAPP--ERDQPLC 1119


>AT5G08630.1 | Symbols:  | DDT domain-containing protein |
           chr5:2798575-2802138 REVERSE LENGTH=723
          Length = 723

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 105 KRSRSQLKSYIAHKAEETCVYRSLPLGQDRRRNRYWQFAASASSNDPGSGRIFVEQHDG- 163
           +R   Q + Y   + E+  + R+ PLG+DR  NRYW F +        +GRIFVE  D  
Sbjct: 584 RRGPEQRRQYYEREMEKIVI-RTNPLGKDRDYNRYWWFRS--------NGRIFVENSDSE 634

Query: 164 NWRLIDSGEAFDNLLTSLDSRGIRESHLHLMLQKIEKSFKENVLKNTPIIGGSDEVSIEK 223
            W    + E  D L+ SL+ +G RE  L+  L+         + K T  I  + E+    
Sbjct: 635 EWGYYTAKEELDALMGSLNRKGERELSLYTQLEIFYDRICSTLQKRTKDIAHNIEMEEAV 694

Query: 224 EAKETHLIPDRHDSSSSAL 242
             + T +    H++ +SA 
Sbjct: 695 VRRSTRVRAPLHENPASAF 713