Miyakogusa Predicted Gene

Lj6g3v2006420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006420.1 tr|A9SHW2|A9SHW2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_79634
,50.52,6e-18,OPA3,Optic atrophy 3-like; SUBFAMILY NOT NAMED,NULL;
OPTIC ATROPHY 3 PROTEIN (OPA3),Optic atrophy 3-,CUFF.60463.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28510.1 | Symbols:  | Optic atrophy 3 protein (OPA3) | chr1:...   200   4e-52
AT3G58150.1 | Symbols:  | Optic atrophy 3 protein (OPA3) | chr3:...   153   7e-38

>AT1G28510.1 | Symbols:  | Optic atrophy 3 protein (OPA3) |
           chr1:10024036-10025939 FORWARD LENGTH=171
          Length = 171

 Score =  200 bits (508), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/153 (63%), Positives = 125/153 (81%), Gaps = 2/153 (1%)

Query: 17  SKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQA 76
           SKP+AS+LK QA +HP+FRQ IIN AQ NH+++T+MQRRIYGHATDVEIRPL+EEKAVQA
Sbjct: 17  SKPLASQLKHQAKVHPKFRQSIINFAQRNHRITTQMQRRIYGHATDVEIRPLDEEKAVQA 76

Query: 77  AVDLIGELFVFSVAGVLVVFEVQRSARSEARKEEIRKQELGAMKQKSEDLAQEVELLKHR 136
           AVDLIGE+F+F V G +VVFEVQRS+RSEARKEE RKQEL  ++ K E+L ++V  LK +
Sbjct: 77  AVDLIGEIFLFGVGGAVVVFEVQRSSRSEARKEEARKQELEELRIKDEELEKQVADLKSK 136

Query: 137 LQEIEQMARGRGLAGVLNFR--QGNTENAKTEK 167
           L+E+EQ+A+ RGL+G+   +   G T + K +K
Sbjct: 137 LEELEQLAKARGLSGIFQLKPQPGTTASGKPDK 169


>AT3G58150.1 | Symbols:  | Optic atrophy 3 protein (OPA3) |
           chr3:21532947-21534072 REVERSE LENGTH=194
          Length = 194

 Score =  153 bits (386), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 110/156 (70%), Gaps = 17/156 (10%)

Query: 17  SKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQA 76
            KP+A++LK++A ++P+FRQ IIN+AQANH+ +TK+QRR  G  TD  IRPLNEE+AVQA
Sbjct: 28  CKPIANQLKKEAGVNPKFRQFIINIAQANHRFTTKLQRRASGRITDAVIRPLNEERAVQA 87

Query: 77  AVDLIGELFVFSVAGVLVVFEVQRSARSEARKEEIRKQELGAMKQKSEDLAQEVELLKHR 136
           A DL+GELF F+VAG  +V+EVQR+AR EA+KEE R+QEL   ++K E +  E+E +K R
Sbjct: 88  AADLLGELFAFTVAGAALVYEVQRNARGEAKKEEKRQQELAEFRRKHEKMENEIEEMKQR 147

Query: 137 L----QEI-------------EQMARGRGLAGVLNF 155
                +E+             E++++ RGLA + N+
Sbjct: 148 CCLLHEELSKPINEQPSKPLNEEVSKPRGLAWLYNY 183