Miyakogusa Predicted Gene
- Lj6g3v2006110.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v2006110.2 tr|G7IK78|G7IK78_MEDTR ATP-dependent RNA helicase
dhx8 OS=Medicago truncatula GN=MTR_2g015320 PE=4 S,89.7,0,seg,NULL;
P-loop containing nucleoside triphosphate hydrolases,NULL;
ATP-DEPENDENT RNA HELICASE,NULL,CUFF.60443.2
(698 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G18465.1 | Symbols: | RNA helicase family protein | chr4:101... 1077 0.0
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1... 600 e-172
AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote... 600 e-171
AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |... 598 e-171
AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei... 590 e-168
AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:230... 580 e-165
AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:193... 572 e-163
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c... 518 e-147
AT1G26370.1 | Symbols: | RNA helicase family protein | chr1:912... 511 e-145
AT1G27900.1 | Symbols: | RNA helicase family protein | chr1:971... 431 e-121
AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosph... 384 e-107
AT5G10370.1 | Symbols: | helicase domain-containing protein / I... 284 1e-76
AT4G01020.1 | Symbols: | helicase domain-containing protein / I... 280 2e-75
AT5G14900.1 | Symbols: | helicase associated (HA2) domain-conta... 222 6e-58
AT2G35920.1 | Symbols: | RNA helicase family protein | chr2:150... 192 6e-49
AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 181 2e-45
AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 181 2e-45
AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protei... 176 5e-44
AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 174 2e-43
AT1G58060.1 | Symbols: | RNA helicase family protein | chr1:214... 165 8e-41
AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 162 1e-39
AT1G58050.1 | Symbols: | RNA helicase family protein | chr1:214... 155 6e-38
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204... 132 8e-31
AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase famil... 132 8e-31
AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu... 130 4e-30
>AT4G18465.1 | Symbols: | RNA helicase family protein |
chr4:10197056-10201611 FORWARD LENGTH=695
Length = 695
Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/695 (73%), Positives = 599/695 (86%), Gaps = 7/695 (1%)
Query: 1 MQFWKPGTEKPEARVVDDGEGGVLFIPGPNXXXXXXXXGYGYASIEKQRLRLPVYKYRTA 60
M FWKPGTEKP R +DGEGG++F+ N YGYA+IEKQR RLPVYKYRT
Sbjct: 1 MAFWKPGTEKP--RFEEDGEGGIVFMS--NNLASSSSSSYGYANIEKQRQRLPVYKYRTE 56
Query: 61 ILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACTQPRRLAVQAVASRVAQ 120
ILYLVE HATTIIVGETGSGKTTQIPQ+LKEAGWA GGR+IACTQPRRLAVQAV++RVA+
Sbjct: 57 ILYLVENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQAVSARVAE 116
Query: 121 EMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLLTKYSVIMVDEAHERS 180
EMGV LG+EVGYTIRFED T VT +KFLTDGVL+REMM DPLLTKYSVIM+DEAHERS
Sbjct: 117 EMGVNLGEEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMMEDPLLTKYSVIMIDEAHERS 176
Query: 181 ISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXXXXXXXXXXXXXHGLKVEPAI 240
ISTDILLGLLKKIQRRRPELRLII+SATIEAK+M++FF G K+EPAI
Sbjct: 177 ISTDILLGLLKKIQRRRPELRLIISSATIEAKTMSNFFNSSKKRHAPEGSTPGPKLEPAI 236
Query: 241 LSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPGDILLFLTGQDDIDAAVQLLN 300
LSVEGRGF+V+I+Y EEPV DY+++ VST+LLI+EREPPGD+L+FLTGQ+DI+ A++LL
Sbjct: 237 LSVEGRGFSVKIHYVEEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQEDIETAIKLLE 296
Query: 301 DQ--NNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKVVISTNIAETSLTLEGIVYV 358
++ +N K+SSGL+ LPLYSGL R++QEL+F+ PRGKRKV++STNIAETSLTLEG+VYV
Sbjct: 297 EEAHSNQKNSSGLLPLPLYSGLSRSEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYV 356
Query: 359 VDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPGKCYRLYTEEYFLNHMAN 418
+DSGFSKQ+FYNPISDIE+LVVAPI PGKCYRLYTE+YFLN M
Sbjct: 357 IDSGFSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLNQMPG 416
Query: 419 EGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRAVEVLYSLGVMDDDAKLT 478
EGIPE+QRSNLVS VIQLKALGIDNILGFDWPA PS EAMIRA+EVLYSL ++DDDAKLT
Sbjct: 417 EGIPEMQRSNLVSTVIQLKALGIDNILGFDWPAPPSSEAMIRALEVLYSLQILDDDAKLT 476
Query: 479 SPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLSVQSIWIAGRGIQKESDEAKL 538
SPTGFQVAE+PLDPMISKM++ASS+LGCS EIITIAAVLSVQS+WI RG+QKE DEAKL
Sbjct: 477 SPTGFQVAELPLDPMISKMILASSELGCSHEIITIAAVLSVQSVWIIARGVQKEQDEAKL 536
Query: 539 RFAAAEGDHVTFLNLYKGFHQSGKSSQWCHKNFVNYHAMKKVLEVREQLRRIAQRIGLVL 598
RFAAAEGDHVTFLN+YKGF +S K +QWC+KNF+NY +MKKV+E+R+QL+RIA+R+G+ L
Sbjct: 537 RFAAAEGDHVTFLNVYKGFLESKKPTQWCYKNFLNYQSMKKVVEIRDQLKRIARRLGITL 596
Query: 599 KSCESDIQVVRKAVTAGFFANACNLEAYSHNGMYKTLRGSQEVYIHPSSVLFRVNPKWVI 658
KSC+ D++ VRKAVTAGFFANAC LE +S NG+YKT+RGS+EVYIHPSSVLFRVNPKWV+
Sbjct: 597 KSCDGDMEAVRKAVTAGFFANACRLEPHS-NGVYKTIRGSEEVYIHPSSVLFRVNPKWVV 655
Query: 659 YTSLVSTDRQYMRNVMTIDPSWLLEAAPHFYQLQQ 693
Y S+VST+RQYMRNV+TI+PSWL E APHFYQ +Q
Sbjct: 656 YQSIVSTERQYMRNVVTINPSWLTEVAPHFYQNRQ 690
>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
chr1:11742356-11749286 REVERSE LENGTH=1034
Length = 1034
Score = 600 bits (1548), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/652 (45%), Positives = 436/652 (66%), Gaps = 27/652 (4%)
Query: 45 IEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACT 104
+++ R LP+Y YR +L VE H +IVG+TGSGKTTQIPQ+L EAG+ G+ + CT
Sbjct: 387 LQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGK-VGCT 445
Query: 105 QPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPL 164
QPRR+A +VA+RVAQEMGV+LG EVGY+IRFED T D TV+K++TDG+LLRE++ +P
Sbjct: 446 QPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFEDCT-SDKTVLKYMTDGMLLRELLGEPD 504
Query: 165 LTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXXXXXX 224
L YSV++VDEAHER++STDIL GL+K I R RP+L+L+I+SAT++A+ +D+F
Sbjct: 505 LASYSVVIVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATMDAEKFSDYFDTA--- 561
Query: 225 XXXXXXXHGLKVEPAILSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPGDILL 284
I S GR + V+INY P DY+ AA+ T+L IH REP GDIL+
Sbjct: 562 --------------PIFSFPGRRYPVEINYTSAPEADYMDAAIVTILTIHVREPLGDILV 607
Query: 285 FLTGQDDIDAAVQLLNDQNNGKHSS--GLIILPLYSGLPRADQELVFSTIPRGKRKVVIS 342
F TGQ++I+ A ++L + G + LII P+Y+ LP Q +F P G RKVV++
Sbjct: 608 FFTGQEEIETAEEILKHRIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEGARKVVLA 667
Query: 343 TNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPGK 402
TNIAETSLT++GI YVVD GFSK + YNP + +E+L++ PI PGK
Sbjct: 668 TNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPISKASATQRAGRAGRTSPGK 727
Query: 403 CYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRAV 462
CYRLYT + N + +PE+QR+NL S V+ LK+LGI +++ FD+ P EA+++++
Sbjct: 728 CYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGIHDLINFDFMDPPPAEALVKSL 787
Query: 463 EVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLSV-QS 521
E+L++LG ++ +LT G ++AE PLDPM+SKM++ S + CS+EII+IAA+LS+ S
Sbjct: 788 ELLFALGALNKLGELTK-AGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAMLSIGGS 846
Query: 522 IWIAGRGIQKESDEAKLRFAAAE-GDHVTFLNLYKGFHQSGKSSQWCHKNFVNYHAMKKV 580
I+ + Q +D A++ F GDH+ L +Y + ++ S+QWC++N++ +MK+
Sbjct: 847 IFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKETNFSTQWCYENYIQVRSMKRA 906
Query: 581 LEVREQLRRIAQRIGLVLKSCESDIQVVRKAVTAGFFANACNLEAYSHNGMYKTLRGSQE 640
++R+QL + +R+ + + S +++ VRK++ AGFF + L+ NG Y+T++ Q
Sbjct: 907 RDIRDQLEGLLERVEIDISSNLNELDSVRKSIVAGFFPHTAKLQ---KNGSYRTVKHPQT 963
Query: 641 VYIHPSSVLFRVNPKWVIYTSLVSTDRQYMRNVMTIDPSWLLEAAPHFYQLQ 692
V+IHP+S L +V P+WV+Y LV T ++YMR V + P WL+E APH+YQL+
Sbjct: 964 VHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELAPHYYQLK 1015
>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein |
chr1:11742356-11749286 REVERSE LENGTH=1044
Length = 1044
Score = 600 bits (1547), Expect = e-171, Method: Compositional matrix adjust.
Identities = 295/652 (45%), Positives = 436/652 (66%), Gaps = 27/652 (4%)
Query: 45 IEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACT 104
+++ R LP+Y YR +L VE H +IVG+TGSGKTTQIPQ+L EAG+ G+ + CT
Sbjct: 397 LQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGK-VGCT 455
Query: 105 QPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPL 164
QPRR+A +VA+RVAQEMGV+LG EVGY+IRFED T D TV+K++TDG+LLRE++ +P
Sbjct: 456 QPRRVAAMSVAARVAQEMGVKLGHEVGYSIRFEDCT-SDKTVLKYMTDGMLLRELLGEPD 514
Query: 165 LTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXXXXXX 224
L YSV++VDEAHER++STDIL GL+K I R RP+L+L+I+SAT++A+ +D+F
Sbjct: 515 LASYSVVIVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATMDAEKFSDYFDTA--- 571
Query: 225 XXXXXXXHGLKVEPAILSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPGDILL 284
I S GR + V+INY P DY+ AA+ T+L IH REP GDIL+
Sbjct: 572 --------------PIFSFPGRRYPVEINYTSAPEADYMDAAIVTILTIHVREPLGDILV 617
Query: 285 FLTGQDDIDAAVQLLNDQNNGKHSS--GLIILPLYSGLPRADQELVFSTIPRGKRKVVIS 342
F TGQ++I+ A ++L + G + LII P+Y+ LP Q +F P G RKVV++
Sbjct: 618 FFTGQEEIETAEEILKHRIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEGARKVVLA 677
Query: 343 TNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPGK 402
TNIAETSLT++GI YVVD GFSK + YNP + +E+L++ PI PGK
Sbjct: 678 TNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPISKASATQRAGRAGRTSPGK 737
Query: 403 CYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRAV 462
CYRLYT + N + +PE+QR+NL S V+ LK+LGI +++ FD+ P EA+++++
Sbjct: 738 CYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGIHDLINFDFMDPPPAEALVKSL 797
Query: 463 EVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLSV-QS 521
E+L++LG ++ +LT G ++AE PLDPM+SKM++ S + CS+EII+IAA+LS+ S
Sbjct: 798 ELLFALGALNKLGELTK-AGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAMLSIGGS 856
Query: 522 IWIAGRGIQKESDEAKLRFAAAE-GDHVTFLNLYKGFHQSGKSSQWCHKNFVNYHAMKKV 580
I+ + Q +D A++ F GDH+ L +Y + ++ S+QWC++N++ +MK+
Sbjct: 857 IFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKETNFSTQWCYENYIQVRSMKRA 916
Query: 581 LEVREQLRRIAQRIGLVLKSCESDIQVVRKAVTAGFFANACNLEAYSHNGMYKTLRGSQE 640
++R+QL + +R+ + + S +++ VRK++ AGFF + L+ NG Y+T++ Q
Sbjct: 917 RDIRDQLEGLLERVEIDISSNLNELDSVRKSIVAGFFPHTAKLQ---KNGSYRTVKHPQT 973
Query: 641 VYIHPSSVLFRVNPKWVIYTSLVSTDRQYMRNVMTIDPSWLLEAAPHFYQLQ 692
V+IHP+S L +V P+WV+Y LV T ++YMR V + P WL+E APH+YQL+
Sbjct: 974 VHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELAPHYYQLK 1025
>AT3G26560.1 | Symbols: | ATP-dependent RNA helicase, putative |
chr3:9750122-9753719 REVERSE LENGTH=1168
Length = 1168
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 303/654 (46%), Positives = 427/654 (65%), Gaps = 25/654 (3%)
Query: 44 SIEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIAC 103
SI++QR LP+YK + ++ V + +++GETGSGKTTQ+ Q+L EAG+ + G+ I C
Sbjct: 507 SIQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGK-IGC 565
Query: 104 TQPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADP 163
TQPRR+A +VA RVA+E G +LG+EVGY IRFED T PD TVIK++TDG+LLRE++ D
Sbjct: 566 TQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD-TVIKYMTDGMLLREILIDE 624
Query: 164 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXXXXX 223
L++YSVIM+DEAHER+I TD+L GLLKK+ +RR +LRLI+ SAT++A+ + +F
Sbjct: 625 NLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKFSGYFFNCN- 683
Query: 224 XXXXXXXXHGLKVEPAILSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPGDIL 283
I ++ GR F V+I Y ++P DY+ AA+ TVL IH EP GDIL
Sbjct: 684 ----------------IFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPEGDIL 727
Query: 284 LFLTGQDDIDAAVQLLNDQNNG--KHSSGLIILPLYSGLPRADQELVFSTIPRGKRKVVI 341
+FLTGQ++ID+A Q L ++ G K+ LIILP+YS LP Q +F P GKRKVV+
Sbjct: 728 VFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGKRKVVV 787
Query: 342 STNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPG 401
+TNIAE SLT++GI YVVD GF+KQ YNP +E+LV+ PI PG
Sbjct: 788 ATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGRTGPG 847
Query: 402 KCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRA 461
KCYRLYTE + N M IPEIQR NL + +KA+GI+++L FD+ P P+A+I A
Sbjct: 848 KCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQPQALISA 907
Query: 462 VEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLSVQS 521
+E LYSLG +D++ LT G ++AE PL+P +SKM++AS LGCS+EI+T+ A++ +
Sbjct: 908 MEQLYSLGALDEEGLLTK-LGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGN 966
Query: 522 IWIAGRGIQKESDEAKLRFAAAEGDHVTFLNLYKGFHQSGKSSQWCHKNFVNYHAMKKVL 581
I+ R Q ++D+ + +F EGDH+T L +Y+ + S WC +NF+ ++++
Sbjct: 967 IFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFIQSRSLRRAQ 1026
Query: 582 EVREQLRRIAQRIGLVLKSCESDIQVVRKAVTAGFFANACNLEAYSHNGMYKTLRGSQEV 641
+VR+QL I + L + + + +RKA+TAGFF + + Y+TL +Q V
Sbjct: 1027 DVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEG---YRTLVENQPV 1083
Query: 642 YIHPSSVLFRVNPKWVIYTSLVSTDRQYMRNVMTIDPSWLLEAAPHFYQLQQPN 695
YIHPSS LF+ P WVIY LV T ++YMR V IDP WL+E AP F+++ P
Sbjct: 1084 YIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPT 1137
>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
chr2:14872728-14879615 FORWARD LENGTH=1044
Length = 1044
Score = 590 bits (1521), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/656 (44%), Positives = 433/656 (66%), Gaps = 27/656 (4%)
Query: 41 GYASIEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRL 100
+ +++ R LP+Y YR +L V+ H IIVGETGSGKTTQIPQ+L EAG+ G+
Sbjct: 393 AFHMLQEDRKALPIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHEAGYTKLGK- 451
Query: 101 IACTQPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMM 160
+ CTQPRR+A +VA+RVAQEMG +LG EVGY+IRFED T + T++K++TDG+LLRE++
Sbjct: 452 VGCTQPRRVAAMSVAARVAQEMGGKLGHEVGYSIRFEDCTS-EKTILKYMTDGMLLRELL 510
Query: 161 ADPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXX 220
+P L YSVI+VDEAHER++ TDIL GL+K I R RP+L+L+I+SAT++A+ +DFF
Sbjct: 511 GEPDLGSYSVIIVDEAHERTLRTDILFGLVKDIARARPDLKLLISSATMDAEKFSDFFD- 569
Query: 221 XXXXXXXXXXXHGLKVEPAILSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPG 280
+ I GR + V I + P DY+ AA++TVL IH +EP G
Sbjct: 570 ----------------QAPIFRFPGRRYPVDICFTTAPEADYMDAAITTVLTIHVKEPLG 613
Query: 281 DILLFLTGQDDIDAAVQLLNDQNNGKHSS--GLIILPLYSGLPRADQELVFSTIPRGKRK 338
D+L+FL GQ++I+A + L + G + LII P+Y+ LP Q +F P G RK
Sbjct: 614 DVLVFLPGQEEIEAVEENLKHKIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEGARK 673
Query: 339 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXX 398
VV++TNIAETSLT++GI YVVD GFSK + YNP + +E+L+V PI
Sbjct: 674 VVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLVTPISKASATQRTGRAGRT 733
Query: 399 XPGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAM 458
PGKCYRLYT + N + + +PEIQR+NL S V+ LK+LGI N+L FD+ P EA+
Sbjct: 734 SPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVLSLKSLGIHNLLNFDFMDPPPSEAL 793
Query: 459 IRAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLS 518
I+++E+L++LG ++ +LT G ++AE PLDPM+SKM++ S + CS+EII+IAA+LS
Sbjct: 794 IKSLELLFALGALNQLGELTK-AGRRMAEFPLDPMLSKMIVVSDKYKCSDEIISIAAMLS 852
Query: 519 V-QSIWIAGRGIQKESDEAKLRFAAAE-GDHVTFLNLYKGFHQSGKSSQWCHKNFVNYHA 576
+ SI+ + Q +D A F GDH+ FL +Y + ++ S+QWC++N++ +
Sbjct: 853 IGPSIFYRPKDKQVHADNAMKNFHVGNVGDHIAFLKIYNSWKETNYSTQWCYENYIQVRS 912
Query: 577 MKKVLEVREQLRRIAQRIGLVLKSCESDIQVVRKAVTAGFFANACNLEAYSHNGMYKTLR 636
MK+ ++R+QL + +R+ + + S +++ +RK++ AGFF + L+ NG Y+T++
Sbjct: 913 MKRARDIRDQLEGLLERVEIDVSSNANELDSIRKSIVAGFFPHTAKLQK---NGSYRTVK 969
Query: 637 GSQEVYIHPSSVLFRVNPKWVIYTSLVSTDRQYMRNVMTIDPSWLLEAAPHFYQLQ 692
Q V+IHP+S L +V P+WV+Y LV T ++YMR V + P WL+E APH+YQL+
Sbjct: 970 HPQTVHIHPASGLSQVLPRWVVYHQLVLTSKEYMRQVTELKPEWLIEIAPHYYQLK 1025
>AT3G62310.1 | Symbols: | RNA helicase family protein |
chr3:23057516-23060561 REVERSE LENGTH=726
Length = 726
Score = 580 bits (1495), Expect = e-165, Method: Compositional matrix adjust.
Identities = 306/675 (45%), Positives = 431/675 (63%), Gaps = 46/675 (6%)
Query: 42 YASIEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEA--GWASGGR 99
Y I ++R LPV+ + L + + T I+VGETGSGKTTQIPQF+ +A S R
Sbjct: 51 YYDILEKRRTLPVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKR 110
Query: 100 ---LIACTQPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLL 156
L+ CTQPRR+A +V+ RVA+EM V +G+EVGY+IRFED + P TV+K+LTDG+LL
Sbjct: 111 RKWLVGCTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPR-TVLKYLTDGMLL 169
Query: 157 REMMADPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMAD 216
RE MADPLL +Y VI++DEAHER+++TD+L GLLK++ + RP+L+L++ SAT+EA+ D
Sbjct: 170 REAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQD 229
Query: 217 FFXXXXXXXXXXXXXHGLKVEPAILSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHER 276
+F ++ V GR V+I Y +EP +DY++AA+ TV+ IH
Sbjct: 230 YFSGA-----------------PLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMC 272
Query: 277 EPPGDILLFLTGQDDIDAAVQLLNDQ--NNGKHSSGLIILPLYSGLPRADQELVFSTIPR 334
EPPGDIL+FLTG+++I+ A + +N + N G + ++PLYS LP A Q+ +F P
Sbjct: 273 EPPGDILVFLTGEEEIEDACRKINKEVGNLGDQVGPIKVVPLYSTLPPAMQQKIFDPAPE 332
Query: 335 G-------KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXX 387
RK+V+STNIAETSLT++GIVYV+D GF+KQ+ YNP +E+L+V+PI
Sbjct: 333 PVTEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKAS 392
Query: 388 XXXXXXXXXXXXPGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGF 447
PGKC+RLYTE+ F N + + PEI RSNL + V+ LK LGID+++ F
Sbjct: 393 AHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF 452
Query: 448 DWPASPSPEAMIRAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCS 507
D+ P+PE ++RA+EVL LG +DDD LT TG ++E PLDP ++KM+I S + CS
Sbjct: 453 DFMDPPAPETLMRALEVLNYLGALDDDGNLTK-TGEIMSEFPLDPQMAKMLIVSPEFNCS 511
Query: 508 EEIITIAAVLSVQSIWIAGRGIQKESDEAKLRFAAAEGDHVTFLNLYKGFHQSGKSSQWC 567
EI++++A+LSV + +I R QK +DEAK RF EGDH+T LN+Y F Q+ + WC
Sbjct: 512 NEILSVSAMLSVPNCFIRPREAQKAADEAKARFGHIEGDHLTLLNVYHAFKQNNEDPNWC 571
Query: 568 HKNFVNYHAMKKVLEVREQLRRIAQRIGLVLKSCESDIQV------VRKAVTAGFFANAC 621
++NF+N AMK VR+QL RI R LK C +D +RKA+ AG+F
Sbjct: 572 YENFINNRAMKSADNVRQQLVRIMSRFN--LKMCSTDFNSRDYYINIRKAMLAGYFMQVA 629
Query: 622 NLEAYSHNGMYKTLRGSQEVYIHPSSVLFRVNPKWVIYTSLVSTDRQYMRNVMTIDPSWL 681
+LE H Y T++ +Q V++HPS+ L P+WVIY V T R ++R V I WL
Sbjct: 630 HLERTGH---YLTVKDNQVVHLHPSNCLDH-KPEWVIYNEYVLTSRNFIRTVTDIRGEWL 685
Query: 682 LEAAPHFYQLQQ-PN 695
++ A H+Y L PN
Sbjct: 686 VDVASHYYDLSNFPN 700
>AT2G47250.1 | Symbols: | RNA helicase family protein |
chr2:19399923-19402981 REVERSE LENGTH=729
Length = 729
Score = 572 bits (1475), Expect = e-163, Method: Compositional matrix adjust.
Identities = 304/675 (45%), Positives = 430/675 (63%), Gaps = 46/675 (6%)
Query: 42 YASIEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASG---G 98
Y I ++R LPV+ + L + ++ T I+VGETGSGKTTQIPQF+ +A A G
Sbjct: 55 YFEILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKG 114
Query: 99 R--LIACTQPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLL 156
R L+ CTQPRR+A +V+ RVA EM V +G+EVGY+IRFED T T++K+LTDG+LL
Sbjct: 115 RKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTS-SRTMLKYLTDGMLL 173
Query: 157 REMMADPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMAD 216
RE MADPLL +Y VI++DEAHER+++TD+L GLLK++ R RP+L+L++ SAT+EA+ +
Sbjct: 174 REAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQE 233
Query: 217 FFXXXXXXXXXXXXXHGLKVEPAILSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHER 276
+F ++ V GR V+I Y +EP +DY++AA+ TV+ IH
Sbjct: 234 YFSGA-----------------PLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMC 276
Query: 277 EPPGDILLFLTGQDDIDAAVQLLNDQ--NNGKHSSGLIILPLYSGLPRADQELVFSTIP- 333
EPPGDIL+FLTG+++I+ A + +N + N G + ++PLYS LP A Q+ +F P
Sbjct: 277 EPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPV 336
Query: 334 ------RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXX 387
RK+V+STNIAETSLT++GIVYV+D GF+KQ+ YNP +E+L+V+PI
Sbjct: 337 PLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKAS 396
Query: 388 XXXXXXXXXXXXPGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGF 447
PGKC+RLYTE+ F N + + PEI RSNL + V+ LK LGID+++ F
Sbjct: 397 AHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHF 456
Query: 448 DWPASPSPEAMIRAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCS 507
D+ P+PE ++RA+EVL LG +DD+ LT TG ++E PLDP +SKM+I S + CS
Sbjct: 457 DFMDPPAPETLMRALEVLNYLGALDDEGNLTK-TGEIMSEFPLDPQMSKMLIVSPEFNCS 515
Query: 508 EEIITIAAVLSVQSIWIAGRGIQKESDEAKLRFAAAEGDHVTFLNLYKGFHQSGKSSQWC 567
EI++++A+LSV + ++ R QK +DEAK RF +GDH+T LN+Y + Q+ + WC
Sbjct: 516 NEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPNWC 575
Query: 568 HKNFVNYHAMKKVLEVREQLRRIAQRIGLVLKSCESDIQV------VRKAVTAGFFANAC 621
+NFVN AMK VR+QL RI R LK C +D +RKA+ AG+F
Sbjct: 576 FENFVNNRAMKSADNVRQQLVRIMSRFN--LKMCSTDFNSRDYYVNIRKAMLAGYFMQVA 633
Query: 622 NLEAYSHNGMYKTLRGSQEVYIHPSSVLFRVNPKWVIYTSLVSTDRQYMRNVMTIDPSWL 681
+LE H Y T++ +Q V++HPS+ L P+WVIY V T R ++R V I WL
Sbjct: 634 HLERTGH---YLTVKDNQVVHLHPSNCLDH-KPEWVIYNEYVLTTRNFIRTVTDIRGEWL 689
Query: 682 LEAAPHFYQLQQ-PN 695
++ A H+Y L PN
Sbjct: 690 VDVAQHYYDLSNFPN 704
>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
chr5:4122747-4128660 FORWARD LENGTH=1255
Length = 1255
Score = 518 bits (1333), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/660 (39%), Positives = 409/660 (61%), Gaps = 31/660 (4%)
Query: 44 SIEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIAC 103
++ +QR LP++ R +L ++ + ++VGETGSGKTTQ+ Q+L E G+ G ++ C
Sbjct: 550 TMAEQRQYLPIFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTING-IVGC 608
Query: 104 TQPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADP 163
TQPRR+A +VA RV++EM +LGD++GY IRFED+T P+ TVIK++TDGVLLRE + D
Sbjct: 609 TQPRRVAAMSVAKRVSEEMETELGDKIGYAIRFEDVTGPN-TVIKYMTDGVLLRETLKDS 667
Query: 164 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXXXXX 223
L KY V+++DEAHERS++TD+L G+LKK+ RR + +LI+ SAT+ A+ ++FF
Sbjct: 668 DLDKYRVVVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNFFGSV-- 725
Query: 224 XXXXXXXXHGLKVEPAILSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPGDIL 283
I ++ GR F V I Y++ P +DYV+AAV + IH PPGDIL
Sbjct: 726 ---------------PIFNIPGRTFPVNILYSKTPCEDYVEAAVKQAMTIHITSPPGDIL 770
Query: 284 LFLTGQDDIDAAVQLLNDQ------NNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKR 337
+F+TGQD+I+AA L ++ ++ + + L+ILP+YS LP Q +F G R
Sbjct: 771 IFMTGQDEIEAACFSLKERMEQLVSSSSREITNLLILPIYSQLPADLQAKIFQKPEDGAR 830
Query: 338 KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXX 397
K +++TNIAETSLT++GI YV+D+G+ K + +NP ++ L V PI
Sbjct: 831 KCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDALQVFPISRAASDQRAGRAGR 890
Query: 398 XXPGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEA 457
PG CYRLYTE +LN M +PEIQR+NL + V+ LK+L IDN+L FD+ P E
Sbjct: 891 TGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQEN 950
Query: 458 MIRAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVL 517
++ ++ L+ LG +++ LT G+++ E PLDP ++KM++ +L C +E++TI ++L
Sbjct: 951 ILNSMYQLWVLGALNNVGGLTD-LGWKMVEFPLDPPLAKMLLMGERLDCIDEVLTIVSML 1009
Query: 518 SVQSIWIAGRGIQKESDEAKLRFAAAEGDHVTFLNLYKGFHQSGKSSQWCHKNFVNYHAM 577
SV S++ + +ESD A+ +F E DH+T LN+Y+ + + WC+ +++ +
Sbjct: 1010 SVPSVFFRPKERAEESDAAREKFFVPESDHLTLLNVYQQWKEHDYRGDWCNDHYLQVKGL 1069
Query: 578 KKVLEVREQLRRIAQRIGLVLKSCESDIQVVRKAVTAGFFANACNLEAYSHNGMYKTLRG 637
+K EVR QL I +++ + L+SC D +VRKA+ + +F N+ L+ G Y R
Sbjct: 1070 RKAREVRSQLLDILKQLKIELRSCGPDWDIVRKAICSAYFHNSARLKGV---GEYVNCRT 1126
Query: 638 SQEVYIHPSSVLFRV--NPKWVIYTSLVSTDRQYMRNVMTIDPSWLLEAAPHFYQLQQPN 695
++HPSS L+ + P +V+Y L+ T ++YM+ +++P WL E P F+ ++ +
Sbjct: 1127 GMPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATSVEPHWLAELGPMFFSVKDSD 1186
>AT1G26370.1 | Symbols: | RNA helicase family protein |
chr1:9122030-9125368 REVERSE LENGTH=717
Length = 717
Score = 511 bits (1315), Expect = e-145, Method: Compositional matrix adjust.
Identities = 281/703 (39%), Positives = 413/703 (58%), Gaps = 79/703 (11%)
Query: 45 IEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACT 104
I + R LP+ ++ V+ + IIVGETGSGKTTQ+PQFL AG+ G++I T
Sbjct: 34 IAEHRRSLPIASVEKRLVEEVQKNDILIIVGETGSGKTTQLPQFLYNAGFCREGKMIGIT 93
Query: 105 QPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPL 164
QPRR+A VA RVA+E VQLG +VGY+IRF+D T T +K++TDG+LLRE + DP
Sbjct: 94 QPRRIAAVTVAKRVAEECEVQLGQKVGYSIRFDDTTSGS-TRLKYMTDGLLLREALLDPH 152
Query: 165 LTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPE------------------------- 199
L++YSVI+VDEAH+RS+ TD+LL LLKKIQR R +
Sbjct: 153 LSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQVQTTTRDANGP 212
Query: 200 ----------------LRLIIASATIEAKSMADFFXXXXXXXXXXXXXHGLKVEPAILSV 243
L+LII SA+++A+ +++F G K + V
Sbjct: 213 QQNGVLKGYQGRKLSPLKLIIMSASLDARVFSEYFG-------------GAKA----VHV 255
Query: 244 EGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPGDILLFLTGQDDIDAAVQLLND-- 301
+GR F V I Y P DYV A + T+ IH E PGDIL+FLTGQD+I++ +L+ +
Sbjct: 256 QGRQFPVDILYTVHPESDYVDATLVTIFQIHFEEKPGDILVFLTGQDEIESVERLVQERL 315
Query: 302 QNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKVVISTNIAETSLTLEGIVYVVDS 361
QN + L+ L ++S LP Q VF+ P G RKV+++TNIAETS+T+ GI YV+D
Sbjct: 316 QNIPEDKRKLLPLAIFSALPSEQQMKVFAPAPTGFRKVILATNIAETSITIPGIRYVIDP 375
Query: 362 GFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPGKCYRLYTEEYFLNHMANEGI 421
GF K R Y+P +E+L V P PGK +RLY E F + +
Sbjct: 376 GFVKARSYDPSKGMESLDVVPASKAQTLQRSGRAGREGPGKSFRLYPEREF-EKLEDSTK 434
Query: 422 PEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRAVEVLYSLGVMDDDAKLTSPT 481
PEI+R NL + ++QLKALGID+I+GFD+ PS A+I+A+ L+SLG + DD KL +P
Sbjct: 435 PEIKRCNLSNIILQLKALGIDDIVGFDFIDKPSRGAIIKALAELHSLGALADDGKLENPV 494
Query: 482 GFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLSVQSIWIAGRGIQKESDEAKLRFA 541
G+Q++ +PL+P+ SK +I ++Q C EE++ AVLSV+SI+ R ++E+ +K FA
Sbjct: 495 GYQMSRLPLEPVYSKALILANQFNCLEEMLITVAVLSVESIFYDPREKREEARTSKNHFA 554
Query: 542 AAEGDHVTFLNLYK---GFHQSGKSS-----------QWCHKNFVNYHAMKKVLEVREQL 587
+ EGDH+T+L++Y+ F + K++ +WC +N+VN ++K ++ Q+
Sbjct: 555 SVEGDHLTYLSVYRESDEFLEKRKAAGSGNNIDKIMKKWCKENYVNSRSLKHARDIYRQI 614
Query: 588 RRIAQRIGLVLKSCESDIQVVRKAVTAGFFANACNLEAYSHNGMYKTLRGSQEVYIHPSS 647
R ++IG + SC +D+ R+ + A FF A + +G Y+ L + V+IHP+S
Sbjct: 615 REHVEQIGFNVSSCGNDMLAFRRCLAASFFLKAAQRQL---DGTYRALESGEVVHIHPTS 671
Query: 648 VLFRVNPKWVIYTSLVSTDRQYMRNVMTIDPSWLLEAAPHFYQ 690
VLFR P+ VI+ L+ T ++Y++N+ ID WL E APH +Q
Sbjct: 672 VLFRAKPECVIFNELMQTSKKYIKNLTIIDSLWLSELAPHHFQ 714
>AT1G27900.1 | Symbols: | RNA helicase family protein |
chr1:9715615-9720346 REVERSE LENGTH=700
Length = 700
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/671 (38%), Positives = 394/671 (58%), Gaps = 50/671 (7%)
Query: 52 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACTQPRRLAV 111
LP+ ++ I+ VE ++ +I+GETGSGK+TQ+ Q L G+ G +IA TQPRR+A
Sbjct: 4 LPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYTKSG-VIAITQPRRVAA 62
Query: 112 QAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLLTKYSVI 171
+VA RVAQE+ V LG++VGY IRFED T T IK+LTDGVLLRE +++P+L YSVI
Sbjct: 63 VSVARRVAQELDVPLGEDVGYAIRFEDRTTSK-TRIKYLTDGVLLRESLSNPMLDDYSVI 121
Query: 172 MVDEAHERSISTDILLGLLKKIQR-RRPELRLIIASATIEAKSMADFFXXXXXXXXXXXX 230
++DEAHERS++TDILLGL+K++ R R +++I SAT++ + +++FF
Sbjct: 122 ILDEAHERSLNTDILLGLVKRLVRIRASNFKVLITSATLDGEKVSEFFSGC--------- 172
Query: 231 XHGLKVEPAILSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPGDILLFLTGQD 290
+L+V G+ + V+I Y++E Y+++++ + IH REP GDIL+F+TGQD
Sbjct: 173 --------PVLNVPGKLYPVEILYSKERPVSYIESSLKVAIDIHVREPEGDILIFMTGQD 224
Query: 291 DIDAAVQLLNDQNNGKHSSGL---IILPLYSGLPRADQELVFSTIPRGKRKVVISTNIAE 347
DI+ V L ++ II PL+ LP Q VFS P R+ ++STNIAE
Sbjct: 225 DIEKLVSRLEEKVRSLAEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAE 284
Query: 348 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPGKCYRLY 407
TSLT++G+VYV+DSG+ KQR YNP S + +L V I PGKCYRLY
Sbjct: 285 TSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQISKVQANQRAGRAGRTRPGKCYRLY 344
Query: 408 TEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGID--NILGFDWPASPSPEAMIRAVEVL 465
+ + + IPEIQR++L V+ LK+L + +IL FD+ +PS E++ A++ L
Sbjct: 345 PLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDLPDIDILKFDFLDAPSSESLEDALKQL 404
Query: 466 YSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLSVQSIWIA 525
Y + +D++ +T G ++++PL+P +S+ +I +++ GC + +T+ A+LS ++ +
Sbjct: 405 YFIDAIDENGAITR-IGRTMSDLPLEPSLSRTLIEANETGCLSQALTVVAMLSAETTLLP 463
Query: 526 GRG-----IQKESDEAKLRFAAAEGDHVTFLNLYKGFHQSGKSSQWCHKNFVNYHAMKKV 580
R +K +++ L + GDH+ L +++ + ++ WC +N + M V
Sbjct: 464 ARSKPSEKKRKHDEDSNLPNGSGYGDHIQLLQIFESWDRTNYDPVWCKENGMQVRGMVFV 523
Query: 581 LEVREQLRRIAQRIGL---------VLKSCESDIQVVRKAVTAGFFANACNLEAYSHNGM 631
+VR QL +I Q+I S D + +RKA+ G AN HNG
Sbjct: 524 KDVRRQLCQIMQKISKDRLEVGADGRKSSSRDDYRKLRKALCVG-NANQIAERMLRHNG- 581
Query: 632 YKTLR-GSQEVYIHPSSVLFRVN----PKWVIYTSLVSTDRQYMRNVMTIDPSWLLEAAP 686
Y+TL SQ V +HPSSVL N P +V+Y L+ST R +MRNV +D +W+ AP
Sbjct: 582 YRTLSFQSQLVQVHPSSVLSADNDGMMPNYVVYHELISTTRPFMRNVCAVDMAWV---AP 638
Query: 687 HFYQLQQPNLR 697
++++ N+R
Sbjct: 639 IKRKIEKLNVR 649
>AT4G16680.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:9388613-9390774
REVERSE LENGTH=656
Length = 656
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/432 (46%), Positives = 284/432 (65%), Gaps = 25/432 (5%)
Query: 52 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACTQPRRLAV 111
LP++ YR +L L+E + +IVGETGSGKTTQIPQ+L+EAG+ G+ I CTQPRR+A
Sbjct: 215 LPIHGYREELLKLIEENQVLVIVGETGSGKTTQIPQYLQEAGYTKRGK-IGCTQPRRVAA 273
Query: 112 QAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLLTKYSVI 171
+VASRVAQE+GV+LG EVGY+IRFED T + TVIK++TDG+LLRE++ +P L YSVI
Sbjct: 274 MSVASRVAQEVGVKLGHEVGYSIRFEDCTS-EKTVIKYMTDGMLLRELLIEPKLDSYSVI 332
Query: 172 MVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXXXXXXXXXXXXX 231
++DEAHER++STDIL L+K + + RP+LRLII+SAT+EAK +++F
Sbjct: 333 IIDEAHERTLSTDILFALVKDVAKVRPDLRLIISSATLEAKKFSEYFDSAR--------- 383
Query: 232 HGLKVEPAILSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPGDILLFLTGQDD 291
I + GR + V+ + + P DY++ + TV+ IH+ E GDIL+FLTGQ++
Sbjct: 384 --------IYLIPGRRYPVEKLFRKCPEPDYLETVIRTVVQIHQTEAIGDILVFLTGQEE 435
Query: 292 IDAAVQLLNDQ--NNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKVVISTNIAETS 349
I+ L + + G S +II P+YS LP Q VF P+G RKVV++TNIAETS
Sbjct: 436 IETVETNLKRRMMDLGTKGSEIIICPIYSNLPTPLQAKVFEPAPKGTRKVVLATNIAETS 495
Query: 350 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPGKCYRLYTE 409
LT++G+ YV+D G+ K YNP + +E+L+V PI PGKC+RLY
Sbjct: 496 LTIDGVKYVIDPGYCKINSYNPRTGMESLLVTPISKASAAQRAGRSGRTGPGKCFRLYN- 554
Query: 410 EYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRAVEVLYSLG 469
+ + IPEIQR+NL S V+ LK+LGI ++ FD+ P A+++A+E+LY+LG
Sbjct: 555 ---IKDLEPTTIPEIQRANLASVVLTLKSLGIQDVFNFDFMDPPPENALLKALELLYALG 611
Query: 470 VMDDDAKLTSPT 481
+D+ ++T T
Sbjct: 612 ALDEIGEITKGT 623
>AT5G10370.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr5:3261245-3267188 FORWARD LENGTH=1775
Length = 1775
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 216/679 (31%), Positives = 349/679 (51%), Gaps = 63/679 (9%)
Query: 52 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACTQPRRLAV 111
LP+Y YR IL + +++GETGSGK+TQ+ QFL ++G A+ ++ CTQPR++A
Sbjct: 306 LPIYAYRRQILKKIHREQIMVLIGETGSGKSTQLVQFLADSGVAASESIV-CTQPRKIAA 364
Query: 112 QAVASRVAQEM-GVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLLTKYSV 170
+A RV +E G + V T F + V+ ++TD LL+ M D L+ S
Sbjct: 365 MTLADRVREESSGCYEENTVSCTPTFSSTEEISSKVV-YMTDNCLLQHYMKDRSLSGISC 423
Query: 171 IMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXXXXXXXXXXXX 230
+++DEAHERS++TD+LL LLKK+ RR +LRL+I SAT +AK ++ +F
Sbjct: 424 VIIDEAHERSLNTDLLLALLKKLLSRRIDLRLVIMSATADAKQLSQYFFSC--------- 474
Query: 231 XHGLKVEPAILSVEGRGFNVQINYAEEPVQD---------YVQAAVSTVLLIHEREPPGD 281
IL V GR F V+I Y+ ++ YV V + IH+ E G
Sbjct: 475 --------GILLVNGRNFPVEIVYSPSDTEENSVVGGIASYVGDVVKMAVEIHKTEKEGT 526
Query: 282 ILLFLTGQDDIDAAVQLLNDQNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKVVI 341
IL FLT Q +++ A + + I LPL+ L +Q VF P G+RKV+
Sbjct: 527 ILAFLTSQAEVEWACERFI-------TPSAIALPLHGKLSFEEQFRVFQNHP-GRRKVIF 578
Query: 342 STNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPG 401
+TNIAETSLT+ G+ YV+DSG K+ Y P + + L V + PG
Sbjct: 579 ATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCRVSQSSARQRAGRAGRTEPG 638
Query: 402 KCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRA 461
+CYRLY++ F + N+ PEI+R +L ++++ ALG++NI F++ +P PEA+ A
Sbjct: 639 RCYRLYSKNDFDSMNLNQE-PEIRRVHLGVALLRMLALGVNNIAEFNFVDAPVPEAIAMA 697
Query: 462 VEVLYSLGVMDDDAKLTSPT--GFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLS- 518
V+ L LG + + + T G + ++ L+P + K+++ + +E I +AAV++
Sbjct: 698 VQNLVQLGAVVEKNGVHELTQEGHCLVKLGLEPKLGKLILGCFRHRMGKEGIVLAAVMAN 757
Query: 519 VQSIW--IAGRGIQKESDEAKLRFAAAEGDHVTFLNLYKGFHQ--SGKSSQWCHKNFVNY 574
SI+ + + ++D K++F GD T L++YK + + ++WC +N +N
Sbjct: 758 ASSIFCRVGNFDDKMKADRLKVQFCNQNGDLFTLLSVYKEWASLPRERRNKWCWENSLNA 817
Query: 575 HAMKKVLEVREQLRRIAQR-IGLVLKS---------CESDIQVVRKAVTAGFFANACNLE 624
+M++ + ++L +R + LV S + D + ++ + A N
Sbjct: 818 KSMRRCEDTVKELEICIERELTLVSPSYWVWNPNEGTKHD-KHLKMVILASLAENVAMYT 876
Query: 625 AYSHNGMYKTLRGSQEVYIHPSSVL--FRVNPKWVIYTSLVSTDRQYMRNVMTID--PSW 680
Y+ G L G Q+V +HPS L F P WV++ L+S QY+ V D +
Sbjct: 877 GYNQLGYEVALTG-QQVQLHPSCSLLAFGQKPSWVVFGELLSIVDQYLVCVTACDFEALY 935
Query: 681 LLEAAPHF--YQLQQPNLR 697
+L+ P F Q+ + LR
Sbjct: 936 MLDPPPPFDVSQMDERRLR 954
>AT4G01020.1 | Symbols: | helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
| chr4:439086-445043 FORWARD LENGTH=1787
Length = 1787
Score = 280 bits (717), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 213/679 (31%), Positives = 349/679 (51%), Gaps = 63/679 (9%)
Query: 52 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACTQPRRLAV 111
LP+Y YR IL + +++GETGSGK+TQ+ QFL ++G A+ ++ CTQPR++A
Sbjct: 303 LPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIV-CTQPRKIAA 361
Query: 112 QAVASRVAQEM-GVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLLTKYSV 170
+ RV +E G + V T F + V+ ++TD LL+ M D L+ S
Sbjct: 362 MTLTDRVREESSGCYEENTVSCTPTFSSTEEISSKVV-YMTDNCLLQHYMKDRSLSGISC 420
Query: 171 IMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXXXXXXXXXXXX 230
+++DEAHERS++TD+LL LL+K+ RR +LRL+I SAT +A ++ +
Sbjct: 421 VIIDEAHERSLNTDLLLALLRKLLSRRIDLRLVIMSATADANQLSQYL------------ 468
Query: 231 XHGLKVEPAILSVEGRGFNVQINYAEEPVQD---------YVQAAVSTVLLIHEREPPGD 281
+ IL V GR F V+I Y+ ++ Y V + IH+ E G
Sbjct: 469 -----FDCGILHVNGRNFPVEIVYSPSGTEENSVVGRIASYAGDVVKMAVEIHKTEKEGT 523
Query: 282 ILLFLTGQDDIDAAVQLLNDQNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKVVI 341
IL FLT Q +++ A + + I LPL+ L +Q +VF P G+RKV+
Sbjct: 524 ILAFLTSQAEVEWACERFV-------APSAIALPLHGKLSFEEQFMVFQNYP-GRRKVIF 575
Query: 342 STNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPG 401
+TNIAETSLT+ G+ YV+DSG K+ Y P + + L V + PG
Sbjct: 576 ATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQSSARQRAGRAGRTEPG 635
Query: 402 KCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRA 461
+CYRLY++ F + N+ PEI+R +L ++++ ALGIDNI F++ +P PEA+ A
Sbjct: 636 RCYRLYSKTDFDSMNLNQE-PEIRRVHLGVALLRMLALGIDNIAAFEFVDAPVPEAIAMA 694
Query: 462 VEVLYSLG-VMDDDAKLT-SPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLS- 518
++ L LG V++ + L + G + ++ L+P + K+++ + +E I +AAV++
Sbjct: 695 IQNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKLGKLILGCFRHRMGKEGIVLAAVMAN 754
Query: 519 VQSIW--IAGRGIQKESDEAKLRFAAAEGDHVTFLNLYKGFHQ--SGKSSQWCHKNFVNY 574
SI+ + + ++D K++F GD T L++YK + + ++WC +N +N
Sbjct: 755 ASSIFCRVGNFDDKMKADRLKVQFCNDNGDLFTLLSVYKEWASLPRDRRNKWCWENSLNA 814
Query: 575 HAMKKVLEVREQLRRIAQR-IGLVLKS---------CESDIQVVRKAVTAGFFANACNLE 624
+M++ + ++L +R + LV S + D + ++ + A N
Sbjct: 815 KSMRRCEDTVKELEICIERELTLVSPSYWVWNPNEGTKHD-KYLKMVILASLAENVAMYT 873
Query: 625 AYSHNGMYKTLRGSQEVYIHPSSVL--FRVNPKWVIYTSLVSTDRQYMRNVMTID--PSW 680
Y G Y+ SQ+V +HPS L F P WV++ L+S QY+ V D +
Sbjct: 874 GYDQLG-YEVALTSQQVQLHPSCSLLAFGQKPSWVVFGELLSIVDQYLVCVTAFDFEALY 932
Query: 681 LLEAAPHF--YQLQQPNLR 697
+L+ P F Q+ + LR
Sbjct: 933 MLDPPPPFDASQMDERRLR 951
>AT5G14900.1 | Symbols: | helicase associated (HA2)
domain-containing protein | chr5:4822676-4823581 REVERSE
LENGTH=301
Length = 301
Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 165/274 (60%), Gaps = 16/274 (5%)
Query: 427 SNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRAVEVLYSLGVMDDDAKLTSPTGFQVA 486
+NL + V+ LK L + N++ FD SP+P+ + RA++ LY LG +DDD LT TG ++
Sbjct: 2 TNLANTVLTLKGLSVKNLVRFDLIDSPAPDTLARALDDLYHLGALDDDCNLTK-TGEMMS 60
Query: 487 EIPLDPMISKMMIASSQLGCSEEIITIAAVLSVQSIWIAGRG-IQKESDEAKLRFAAAEG 545
E PLDP ++KM+I S Q CS EI++I+A+LSV + +I RG QK +DEAK FA +G
Sbjct: 61 EFPLDPQMAKMLIVSPQFNCSNEILSISAMLSVPNCFIRPRGEAQKAADEAKSSFAHIDG 120
Query: 546 DHVTFLNLYKGFHQSGKSSQWCHKNFVNYHAMKKVLEVREQLRRIAQRIGLVLKSCESDI 605
DH+T LNL+ F Q+ + WC F+NY AMK + VREQL RI R +K C D
Sbjct: 121 DHLTLLNLFHAFLQNNQDPNWCCTKFINYRAMKSAVSVREQLVRIMLRFQ--IKLCSPDF 178
Query: 606 QV------VRKAVTAGFFANACNLEAYSHNGMYKTLR--GSQEVYIHPSSVLFRVNPKWV 657
+RKA+ AG+F +LE G Y T R Q V++HPS+ L P+WV
Sbjct: 179 NSRDYYVNIRKALLAGYFMQVAHLE---RTGHYLTFRDKDDQVVHLHPSNCLDH-KPEWV 234
Query: 658 IYTSLVSTDRQYMRNVMTIDPSWLLEAAPHFYQL 691
+Y V T R ++R V I WL++ APH+Y+L
Sbjct: 235 VYNEYVFTSRNFIRTVTHIRGEWLVDVAPHYYKL 268
>AT2G35920.1 | Symbols: | RNA helicase family protein |
chr2:15075674-15080506 FORWARD LENGTH=995
Length = 995
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 130/438 (29%), Positives = 225/438 (51%), Gaps = 22/438 (5%)
Query: 261 DYVQAAVSTVLLIHEREPPGDILLFLTGQDDIDAAVQLLNDQNNGKHSSGLIILPLYSGL 320
D V+A + + + E G IL+FLTG D+I ++ +N N SS ++LPL+ +
Sbjct: 488 DLVEATIEHICRL---EGGGAILVFLTGWDEISKLLEKINMNNFLGDSSKFLVLPLHGSM 544
Query: 321 PRADQELVFSTIPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVV 380
P +Q +F P KRK+V++TNIAE+S+T++ +VYVVD G +K+ Y+ ++ + L+
Sbjct: 545 PTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKVACLLP 604
Query: 381 APIXXXXXXXXXXXXXXXXPGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALG 440
+ I G CYRLY + + + +PEI R+ L + +K+L
Sbjct: 605 SWISKASAHQRRGRAGRVQAGVCYRLYPKVIY-DAFPQYQLPEIIRTPLQELCLHIKSLQ 663
Query: 441 IDNILGFDWPASPSPEAMI--RAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMM 498
+ +I F A P+A+ A+E+L ++G ++D +LT P G + +P+DP I KM+
Sbjct: 664 VGSIGSFLAKALQPPDALAVENAIELLKTIGALNDVEELT-PLGRHLCTLPVDPNIGKML 722
Query: 499 IASSQLGCSEEIITIAAVLSVQSIWIAGRGIQKESDEAKLRFAAAE-GDHVTFLNLYKGF 557
+ + C +TIAA L+ +S ++ ++E+DEAK FA DH+ L Y+G+
Sbjct: 723 LIGAIFQCVNPALTIAAALAYRSPFVLPLNRKEEADEAKRYFAGDSCSDHIALLKAYEGY 782
Query: 558 HQS---GKSSQWCHKNFVNYHAMKKVLEVREQLRRIAQRIGLVLKSCES-------DIQV 607
+ G +C +NF++ ++ + ++R Q + IG V KS + D+++
Sbjct: 783 RDAKRGGNEKDFCWQNFLSPVTLRMMEDMRNQFLDLLSDIGFVDKSKPNAYNQYSYDMEM 842
Query: 608 VRKAVTAGFFANACNLEAYSHNGMYKTLRGSQEVYIHPSSVLFRVN---PKWVIYTSLVS 664
+ + AG + N + + T + +V IHP SV RVN +++Y+ V
Sbjct: 843 ISAVLCAGLYPNVVQCKRRGKRTAFYT-KELGKVDIHPGSVNARVNLFSLPYLVYSEKVK 901
Query: 665 TDRQYMRNVMTIDPSWLL 682
T Y+R+ I LL
Sbjct: 902 TTSVYIRDSTNISDYALL 919
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 109/173 (63%), Gaps = 4/173 (2%)
Query: 49 RLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWAS--GGRL-IACTQ 105
R +LP +K + L V + ++ GETG GKTTQ+PQF+ E +S G I CTQ
Sbjct: 225 REKLPAFKMKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNIICTQ 284
Query: 106 PRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLL 165
PRR++ +VASR++ E G +G+ VGY IR E + D T + F T GVLLR ++ DP L
Sbjct: 285 PRRISAISVASRISAERGESIGESVGYQIRLES-KRSDQTRLLFCTTGVLLRRLIEDPNL 343
Query: 166 TKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFF 218
T S ++VDE HER ++ D LL +L+ + RRP+LRLI+ SATI A + +F
Sbjct: 344 TNVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADMFSTYF 396
>AT1G48650.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989517-17995169 REVERSE LENGTH=1206
Length = 1206
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 240/471 (50%), Gaps = 34/471 (7%)
Query: 236 VEPAILSVEGRGFNVQINYAEEPVQ-DYVQAAVSTVLLIH--EREPPGDILLFLTGQDDI 292
VE A+ + + +G+N + + D + + +L H + E PG +L+F+TG DDI
Sbjct: 532 VEDALEAADFKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGERPGAVLVFMTGWDDI 591
Query: 293 DA------AVQLLNDQNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKVVISTNIA 346
++ A LL D N +++L + + ++Q L+F P G RK+V++TN+A
Sbjct: 592 NSLKNQLEAHSLLGDPNK------VLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMA 645
Query: 347 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPGKCYRL 406
ETS+T+ +VYV+D G +K+ Y+ +++ L+ + I PG+CY L
Sbjct: 646 ETSITINDVVYVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHL 705
Query: 407 YTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMI--RAVEV 464
Y + A+ PE+ R+ L S +Q+K+LG+ +I F A PEA+ AVE
Sbjct: 706 YPRCVY-EAFADYQQPELLRTPLQSLCLQIKSLGLGSISEFLSRALQPPEALSVQNAVEY 764
Query: 465 LYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLSVQSIWI 524
L +G +DDD LT P G ++ +P++P + KM+I + C + ++T+ A LSV+ ++
Sbjct: 765 LKIIGALDDDENLT-PLGKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFL 823
Query: 525 AGRGIQKESDEAKLRFAAAE-GDHVTFLNLYKGFHQSGKSS---QWCHKNFVNYHAMKKV 580
+ ++ A+ +F+ + DH+T + Y G+ + ++ +C KNF++ +K +
Sbjct: 824 MPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQTLKAM 883
Query: 581 LEVREQLRRIAQRIGLV--LKSCES---DIQVVRKAVTAGFFANACNLEAYSHNGMYKTL 635
+R+Q + + L+ ++ C D +VR + AG F C++ + KT+
Sbjct: 884 DSMRKQFFNLLKEASLIDNIEGCSKLSHDEHLVRAIICAGMFPGVCSVVNKEKSITLKTM 943
Query: 636 RGSQEVYIHPSSVLFRVNP----KWVIYTSLVSTDRQYMRNVMTIDPSWLL 682
Q V ++ SSV V P W+++ V + ++R+ + S LL
Sbjct: 944 EDGQ-VLLYSSSVNGNV-PMIPFPWLVFNDKVKVNSVFLRDSTAVSDSVLL 992
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 109/173 (63%), Gaps = 4/173 (2%)
Query: 49 RLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAG--WASGGRL-IACTQ 105
R LP YK + A+L + + ++ GETG GKTTQ+PQ++ E+ A G I CTQ
Sbjct: 296 RKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQ 355
Query: 106 PRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLL 165
PRR++ +V+ RVA E G Q+G+ VGY +R E + D ++ F T GVLLR ++ D L
Sbjct: 356 PRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLL-FCTTGVLLRRLLVDRSL 414
Query: 166 TKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFF 218
+ ++VDE HER ++ D LL +LK + RRP+L+LI+ SAT+ A+ + +F
Sbjct: 415 KGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYF 467
>AT1G48650.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:17989670-17995169 REVERSE LENGTH=1197
Length = 1197
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 240/471 (50%), Gaps = 34/471 (7%)
Query: 236 VEPAILSVEGRGFNVQINYAEEPVQ-DYVQAAVSTVLLIH--EREPPGDILLFLTGQDDI 292
VE A+ + + +G+N + + D + + +L H + E PG +L+F+TG DDI
Sbjct: 532 VEDALEAADFKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGERPGAVLVFMTGWDDI 591
Query: 293 DA------AVQLLNDQNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKVVISTNIA 346
++ A LL D N +++L + + ++Q L+F P G RK+V++TN+A
Sbjct: 592 NSLKNQLEAHSLLGDPNK------VLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMA 645
Query: 347 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPGKCYRL 406
ETS+T+ +VYV+D G +K+ Y+ +++ L+ + I PG+CY L
Sbjct: 646 ETSITINDVVYVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHL 705
Query: 407 YTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMI--RAVEV 464
Y + A+ PE+ R+ L S +Q+K+LG+ +I F A PEA+ AVE
Sbjct: 706 YPRCVY-EAFADYQQPELLRTPLQSLCLQIKSLGLGSISEFLSRALQPPEALSVQNAVEY 764
Query: 465 LYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLSVQSIWI 524
L +G +DDD LT P G ++ +P++P + KM+I + C + ++T+ A LSV+ ++
Sbjct: 765 LKIIGALDDDENLT-PLGKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFL 823
Query: 525 AGRGIQKESDEAKLRFAAAE-GDHVTFLNLYKGFHQSGKSS---QWCHKNFVNYHAMKKV 580
+ ++ A+ +F+ + DH+T + Y G+ + ++ +C KNF++ +K +
Sbjct: 824 MPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQTLKAM 883
Query: 581 LEVREQLRRIAQRIGLV--LKSCES---DIQVVRKAVTAGFFANACNLEAYSHNGMYKTL 635
+R+Q + + L+ ++ C D +VR + AG F C++ + KT+
Sbjct: 884 DSMRKQFFNLLKEASLIDNIEGCSKLSHDEHLVRAIICAGMFPGVCSVVNKEKSITLKTM 943
Query: 636 RGSQEVYIHPSSVLFRVNP----KWVIYTSLVSTDRQYMRNVMTIDPSWLL 682
Q V ++ SSV V P W+++ V + ++R+ + S LL
Sbjct: 944 EDGQ-VLLYSSSVNGNV-PMIPFPWLVFNDKVKVNSVFLRDSTAVSDSVLL 992
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 109/173 (63%), Gaps = 4/173 (2%)
Query: 49 RLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAG--WASGGRL-IACTQ 105
R LP YK + A+L + + ++ GETG GKTTQ+PQ++ E+ A G I CTQ
Sbjct: 296 RKTLPAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQ 355
Query: 106 PRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLL 165
PRR++ +V+ RVA E G Q+G+ VGY +R E + D ++ F T GVLLR ++ D L
Sbjct: 356 PRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLL-FCTTGVLLRRLLVDRSL 414
Query: 166 TKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFF 218
+ ++VDE HER ++ D LL +LK + RRP+L+LI+ SAT+ A+ + +F
Sbjct: 415 KGVTHVVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYF 467
>AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protein |
chr1:12099738-12104108 REVERSE LENGTH=1237
Length = 1237
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 162/286 (56%), Gaps = 43/286 (15%)
Query: 43 ASIEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGW-----ASG 97
A +E+ R LP+ I+ + H II G+TG GKTTQ+PQFL EAG+ +S
Sbjct: 232 AEVEETRKDLPIVMMEQEIMEAINRHPAVIISGQTGCGKTTQVPQFLYEAGFGSKQFSSR 291
Query: 98 GRLIACTQPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLR 157
+I TQPRR+AV A A RVA E+GV+LG EVG+ +R+ D + + IKF+TDG+LLR
Sbjct: 292 SGIIGITQPRRVAVLATAKRVAFELGVRLGKEVGFQVRY-DKKIGENSSIKFMTDGILLR 350
Query: 158 EMMADPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPE------------------ 199
E+ D LL +YSVI++DEAHERS++TDIL+G+L ++ + R E
Sbjct: 351 EIQNDFLLRRYSVIILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQKSLQSGGTVTSE 410
Query: 200 -----LRLIIASATIEAKSMADFFXXXXXXXXXXXXXHGLKVEPAILSVEGRGFNVQINY 254
L+LI+ SAT+ + DF P ++ V R + V I++
Sbjct: 411 CQITPLKLILMSATLRVE---DFVSGKRLFPNI----------PPLIEVPTRQYPVTIHF 457
Query: 255 AEE-PVQDYVQAAVSTVLLIHEREPPGDILLFLTGQDDIDAAVQLL 299
+++ + DY+ A V+ IH++ P G IL+F+TGQ ++D + L
Sbjct: 458 SKKTEIVDYIGEAYKKVMSIHKKLPQGGILVFVTGQREVDYLCEKL 503
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 112/460 (24%), Positives = 197/460 (42%), Gaps = 70/460 (15%)
Query: 301 DQNNGKHSSG-LIILPLYSGLPRADQELVFSTIPRGKRKVVISTNIAETSLTLEGIVYVV 359
+Q K S G L +LPLY+ L A Q VF + + +R VV++TN+AETSLT+ GI YVV
Sbjct: 636 EQVKNKFSPGKLRVLPLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVV 695
Query: 360 DSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXXPGKCYRLYTEEYFLNHMANE 419
D+G K + Y+ + +E+ V I PG CYRLY+ F N
Sbjct: 696 DTGRVKVKNYDSKTGMESYEVDWISQASASQRAGRAGRTGPGHCYRLYSSAVFSNIFEES 755
Query: 420 GIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRAVEVLYSLGVMDDDAKLTS 479
+PEI + + ++ +K++ I + F +P P P A+ A L +L +D + LT
Sbjct: 756 SLPEIMKVPVDGVILLMKSMNIPKVENFPFPTPPEPSAIREAERCLKALEALDSNGGLT- 814
Query: 480 PTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAV-----------LSVQSIWI---- 524
P G ++ P+ P S+M++ Q+ + A + LS+ + I
Sbjct: 815 PLGKAMSHYPMSPRHSRMLLTVIQMLKETRNYSRANLILGYAVAAVAALSLPNPLIMEFE 874
Query: 525 ---------AGRGIQKESDE-----------AKLRFAAAEGDHVTFLNLYKGFHQSGKSS 564
A + +++E + A+ RF+ D +T F S
Sbjct: 875 GEKKNESKDADKTVKQEDKQRKKDRKEKIKAARDRFSNPSSDALTVAYALHSFEVSENGM 934
Query: 565 QWCHKNFVNYHAMKKVLEVREQLRRI--------------------------AQRIGLVL 598
+C N ++ M ++ ++++QL R+ + RI
Sbjct: 935 GFCEANGLHLKTMDEMSKLKDQLLRLVFNCCKPSETEDSFSWTHGTIQDVEKSWRITTST 994
Query: 599 KS----CESDIQVVRKAVTAGFFANACNLEAYSHNGMYKTLRGSQEVYIHPSSVLFRVNP 654
S +++ +++ +A+ AG+ A + + Y+ + V++H S L P
Sbjct: 995 SSKTPLLQNEEELLGEAICAGW---ADRVARKTRATEYQACAVQEPVFLHRWSSLINSAP 1051
Query: 655 KWVIYTSLVSTDRQYMRNVMTIDPSWLLEAAPHFYQLQQP 694
+ ++Y+ L+ T+R YM + P WL++ A P
Sbjct: 1052 ELLVYSELLLTNRPYMHGATRVRPEWLVKHAKSLCVFSAP 1091
>AT2G01130.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:88847-94635 REVERSE LENGTH=1113
Length = 1113
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/424 (26%), Positives = 222/424 (52%), Gaps = 17/424 (4%)
Query: 273 IHEREPPGDILLFLTGQDDIDAAVQLLNDQNNGKHSSGLIILPLYSGLPRADQELVFSTI 332
I E E PG IL+FLTG DDI + + L + +++L + + +Q L+F
Sbjct: 492 ICENEGPGGILIFLTGWDDISSLKEKLQIHPIFGNPDLVMLLACHGSMETFEQRLIFEEP 551
Query: 333 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXX 392
G RK+V++TNIAETS+T+ + +V+D G +K+ Y+ +++ L+ + I
Sbjct: 552 ASGVRKIVLATNIAETSITINDVAFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRR 611
Query: 393 XXXXXXXPGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPAS 452
PG+CY LY + + + A +PEI R+ L S +Q+K+L + +I F A
Sbjct: 612 GRAGRVRPGQCYHLYPKCVY-DAFAEYQLPEILRTPLHSLCLQIKSLNLGSISEFLSRAL 670
Query: 453 PSPE--AMIRAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEI 510
SPE A+ +A+ L +G +D++ LT+ G ++++P++P + KM+I + LGC + I
Sbjct: 671 QSPELLAVQKAIAFLKIIGALDENEDLTT-LGRYLSKLPMEPKLGKMLILGAILGCLDPI 729
Query: 511 ITIAAVLSVQSIWIAGRGIQKESDEAKLRFAAAEGDHVTFLNLYKGFHQSGKSS---QWC 567
+T+AA LSV+ ++ + + ++ AK +F+ DH+ + Y+G+ ++ + S +C
Sbjct: 730 LTVAAGLSVRDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYC 789
Query: 568 HKNFVNYHAMKKVLEVREQLRRIAQRIGLVLKS---CES---DIQVVRKAVTAGFFANAC 621
KNF++ +++ + +R++ + + GL+ + C S D + R + G + C
Sbjct: 790 WKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNPSICNSEGNDANLTRAVICYGMYPGIC 849
Query: 622 NLEAYSHNGMYKTLRGSQEVYIHPSSVLFR---VNPKWVIYTSLVSTDRQYMRNVMTIDP 678
++ + KT+ Q V ++ +S R + W+++ + + ++R+
Sbjct: 850 SVVHNERSFSLKTMEDGQ-VLLYSNSENARETKIPYPWLVFNEKIKVNSVFLRDSTACSD 908
Query: 679 SWLL 682
S L+
Sbjct: 909 STLI 912
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 9/187 (4%)
Query: 40 YGYASIEKQRL-----RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGW 94
Y AS+E QR+ LP +K R ++L + + +I GETG GKTTQIPQF+ E+
Sbjct: 203 YWQASVEGQRMLDSRTSLPAFKQRHSVLTAISQNQVIVISGETGCGKTTQIPQFILESEI 262
Query: 95 -ASGGRL--IACTQPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLT 151
A+ G I CTQPRR++ +V+ RVA E G QLG+ VGY +R E + D ++ F T
Sbjct: 263 EANRGAFSSIICTQPRRISAMSVSERVAYERGEQLGESVGYKVRLEGVKGRDTRLL-FCT 321
Query: 152 DGVLLREMMADPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEA 211
G+LLR ++ D L + ++VDE HER ++ D LL +LK + RR EL+LI+ SAT++A
Sbjct: 322 TGILLRRLLVDRNLRGVTHVIVDEIHERGMNEDFLLIILKDLLSRRSELKLILMSATLDA 381
Query: 212 KSMADFF 218
+ + +F
Sbjct: 382 ELFSSYF 388
>AT1G58060.1 | Symbols: | RNA helicase family protein |
chr1:21489480-21501775 REVERSE LENGTH=1459
Length = 1459
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 134/468 (28%), Positives = 222/468 (47%), Gaps = 67/468 (14%)
Query: 280 GDILLFLTGQDDIDAAVQLLNDQNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKV 339
G IL+FL G +I + +L + + +LPL+S + ++Q VF P+G RKV
Sbjct: 916 GAILIFLPGVAEIYMLLDMLAASYRFRGPAADWLLPLHSSIASSEQRKVFLRPPKGLRKV 975
Query: 340 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXX 399
+ +TNIAETS+T++ +VYV+DSG K+ YNP + ++V I
Sbjct: 976 IAATNIAETSITIDDVVYVIDSGKHKENRYNPQKKLSSMVEDWISQANARQRTGRAGRVK 1035
Query: 400 PGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPA--SPSPEA 457
PG C+ LYT F M +PE+ R LV +Q+K LG+ +I F A PS A
Sbjct: 1036 PGICFSLYTRYRFEKLMRPYQVPEMLRMPLVELCLQIKLLGLGHIKPFLSRALEPPSEGA 1095
Query: 458 MIRAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVL 517
M A+ +L+ +G ++ D +LT P G +A++P+D +I KM++ GC I++IAA L
Sbjct: 1096 MTSAISLLHEVGAVEGDEELT-PLGHHLAKLPVDVLIGKMLLYGGIFGCLSPILSIAAFL 1154
Query: 518 SVQSIWIAGRGIQKESDEAKLRFAAAEG-------------DHVTFLNLY----KGFHQS 560
S +S +I + ++ D KL + G DH+ + Y K +
Sbjct: 1155 SYKSPFIYPKDEKQNVDRVKLALLSDNGVSSSDLNNNDRQSDHLLMMVAYDKWVKILQER 1214
Query: 561 G-KSSQ-WCHKNFVNYHAMKKVLEVREQLRRIAQRIGLV----------LKSCESDI--- 605
G K++Q +C F++ M+ + ++R Q + IGL+ K D+
Sbjct: 1215 GMKAAQRFCESKFLSSSVMRMIRDMRVQFGTLLADIGLINLPKTGEFSGRKKENLDVWFS 1274
Query: 606 -------------QVVRKAVTAGFF----ANACNLEAYSHNGMYKT----------LRGS 638
+VV+ + AG + AN + + N + K G
Sbjct: 1275 DPTQPFNMYSQQPEVVKAILCAGLYPNIAANDKGITETTFNSLTKQGNQTKSYSAWYDGR 1334
Query: 639 QEVYIHPSSV--LFRV--NPKWVIYTSLVSTDRQYMRNVMTIDPSWLL 682
+EV+IHPSS+ F+ NP ++++ V T++ Y+R+ + P +L
Sbjct: 1335 REVHIHPSSINSNFKAFQNP-FLVFLEKVETNKVYLRDTTIVSPFSIL 1381
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 108/190 (56%), Gaps = 14/190 (7%)
Query: 42 YASIEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWAS--GGR 99
Y + K R LP+ + + IL ++ ++ GETGSGKTTQ+PQF+ + S GG
Sbjct: 604 YKDMLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGY 663
Query: 100 L-IACTQPRRLAVQAVASRVAQEMGVQ---LGDE-VGYTIRFEDLTKPDVTVIKFLTDGV 154
I CTQPRR+A +VA RVA E L D VGY +R E + D T + F T G+
Sbjct: 664 CNIICTQPRRIAAISVAQRVADERCESSPGLDDSLVGYQVRLES-ARSDKTRLLFCTTGI 722
Query: 155 LLREMMADPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRP------ELRLIIASAT 208
LLR++ D L + I+VDE HERS+ D LL +LK + ++ +L++I+ SAT
Sbjct: 723 LLRKLAGDRTLNDVTHIIVDEVHERSLLGDFLLIILKSLIEKQSCDNTSRKLKVILMSAT 782
Query: 209 IEAKSMADFF 218
++A + +F
Sbjct: 783 VDADLFSRYF 792
>AT5G04895.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:1428796-1434516 FORWARD LENGTH=1161
Length = 1161
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/430 (27%), Positives = 221/430 (51%), Gaps = 28/430 (6%)
Query: 273 IHEREPPGDILLFLTGQDDIDA------AVQLLNDQNNGKHSSGLIILPLYSGLPRADQE 326
I +E PG +L+FLTG DDI + A LL D N +++L + + A+Q
Sbjct: 533 ICRKERPGAVLVFLTGWDDIRSLSDQIKAHPLLGDPNR------VLLLMCHGSMATAEQR 586
Query: 327 LVFSTIPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXX 386
L+F P RK+V++TN+AE S+T+ +V+VVD G +K+ Y+ +++ L+ + I
Sbjct: 587 LIFERAPPNIRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQA 646
Query: 387 XXXXXXXXXXXXXPGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILG 446
PG+CY LY + + + A +PE+ R+ L S +Q+K+L +++I
Sbjct: 647 SARQRRGRAGRLFPGECYHLYPKCVY-DAFAEYQLPELLRTPLNSLCLQIKSLQVESIAE 705
Query: 447 FDWPASPSPEAMI--RAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQL 504
F A +PE++ A+ L +G +D+ LT G ++ +P+DP + KM+I +
Sbjct: 706 FLSAALQAPESLAVQNAIGFLKMIGALDEKENLTD-LGKLLSILPVDPKLGKMLIMGAIF 764
Query: 505 GCSEEIITIAAVLSVQSIWIAGRGIQKESDEAKLRFAAAE-GDHVTFLNLYKGF---HQS 560
C + I+TI + LSV+ ++ + + + AKLRF+A + DH+ + ++G+ +
Sbjct: 765 RCFDPILTIVSGLSVRDPFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAERE 824
Query: 561 GKSSQWCHKNFVNYHAMKKVLEVREQLRRIAQRIGLV-----LKSCESDIQ-VVRKAVTA 614
G + ++C +NF++ ++ + +R+Q I + GLV L + S Q +VR + +
Sbjct: 825 GSAYEFCWRNFLSAQTLQAIHSLRKQFNYILKEAGLVHDDLALNNKLSHNQSLVRAVICS 884
Query: 615 GFFANACNLEAYSHNGMYKTLRGSQ-EVYIHPSSVLFRVNP-KWVIYTSLVSTDRQYMRN 672
G F ++ + +KT+ Q +Y + + F P W+++ V + +R+
Sbjct: 885 GLFPGIASVVHRETSMSFKTMDDGQVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRD 944
Query: 673 VMTIDPSWLL 682
+ S L+
Sbjct: 945 STGVPDSSLI 954
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 110/173 (63%), Gaps = 4/173 (2%)
Query: 49 RLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASG-GRL--IACTQ 105
R LP +K + +L + + ++ GETG GKTTQ+PQ++ E+ SG G I CTQ
Sbjct: 257 RKTLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCNIICTQ 316
Query: 106 PRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLL 165
PRR++ AV+ RV+ E G LG+ VG+ +R E + + ++ F T G+LLR +++D L
Sbjct: 317 PRRISAMAVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLL-FCTSGILLRRLLSDRNL 375
Query: 166 TKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFF 218
+ + VDE HER ++ D L+ +LK++ RRP+LRL++ SAT+ A+ ++++
Sbjct: 376 NGVTHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLVLMSATLNAELFSNYY 428
>AT1G58050.1 | Symbols: | RNA helicase family protein |
chr1:21478590-21487839 REVERSE LENGTH=1417
Length = 1417
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 170/339 (50%), Gaps = 22/339 (6%)
Query: 280 GDILLFLTGQDDIDAAVQLLNDQNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKV 339
G IL+FL G +I+ + L + +SG +LPL+S + +Q+ VF P+G RKV
Sbjct: 883 GAILVFLPGMSEINMLLNRLAASYRFRGASGDWLLPLHSSIASTEQKKVFLRPPKGIRKV 942
Query: 340 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXX 399
+I+TNIAETS+T+E +VYV+DSG K+ YNP + ++V +
Sbjct: 943 IIATNIAETSITIEDVVYVIDSGKHKENRYNPHKKLSSMVEDWVSKANARQRMGRAGRVK 1002
Query: 400 PGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPA--SPSPEA 457
PG C+ LYT F M +PE+ R LV + +K LG+ I F A PS A
Sbjct: 1003 PGHCFSLYTRHRFEKLMRPYQVPEMLRVPLVELCLHIKLLGLGQIKPFLSKALEPPSESA 1062
Query: 458 MIRAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVL 517
+ A+ +L+ +G ++ D +LT P G +A++P+D +I KM++ GC I++IAA L
Sbjct: 1063 INSAILLLHKVGALEGDEELT-PLGHHLAKLPVDLLIGKMLLYGGIFGCLSPILSIAAFL 1121
Query: 518 S-VQSIWIAGRGIQ------------KESDEAKLRFAAAEGDHVTFLNLYKGF----HQS 560
S +S ++ + Q K + L + DH+ + Y+ + H+
Sbjct: 1122 SCCKSPFVYAKDEQNVDRVKLALLSDKLESSSNLNNNDRQSDHLLMVVAYEKWVRILHEQ 1181
Query: 561 G--KSSQWCHKNFVNYHAMKKVLEVREQLRRIAQRIGLV 597
G + +C F+N M+ + E R + + IGL+
Sbjct: 1182 GFKAAESFCESKFLNSSVMRMMRERRVEFGMLLADIGLI 1220
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 19/191 (9%)
Query: 42 YASIEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASG--GR 99
Y + K R LP+ + + IL ++ ++ GETGSGKTTQ+PQF+ + SG G
Sbjct: 587 YKDMLKTRAALPISEVKKDILQKLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGY 646
Query: 100 L-IACTQPRRLAVQAVASRVAQEM-----GVQLGDEVGYTIRFEDLTKPDVTVIKFLTDG 153
I CTQPR + V A RVA E G V Y +R ++ + D T + F T G
Sbjct: 647 CNIICTQPRAITV---AQRVADERCEPPPGFD-NSVVAYQVRHQN-ARSDKTRLLFCTTG 701
Query: 154 VLLREMMADPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRRR------PELRLIIASA 207
+LLR+++ D L + I+VDE HERS+ D LL +LK + ++ P+L++I+ SA
Sbjct: 702 ILLRKLVGDTTLKDVTHIIVDEVHERSLMGDFLLIILKSLIEKQSWDNALPKLKVILMSA 761
Query: 208 TIEAKSMADFF 218
T++A + +F
Sbjct: 762 TVDAHQFSRYF 772
>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
chr1:2040567-2047333 FORWARD LENGTH=1576
Length = 1576
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 187/383 (48%), Gaps = 28/383 (7%)
Query: 280 GDILLFLTGQDDIDAAVQLLNDQNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKV 339
G IL+FL G ++I + L D HS+ IIL L+S +P +Q+ VF+ PRG RK+
Sbjct: 576 GAILVFLPGWEEISKTKEKLLDDRFFAHSAKFIILCLHSRVPAEEQKKVFNRPPRGCRKI 635
Query: 340 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXX 399
V++TNIAE+++T++ +VYV+DSG K++ Y+P +D+ L + +
Sbjct: 636 VLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLQSSWVSKANAKQRAGRAGRCQ 695
Query: 400 PGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGID-NILGF-----DWPASP 453
G CY LY+ + + +PE+ R + +Q+K L + N+ F D P +
Sbjct: 696 AGICYHLYS-KLRAASLPEYRVPEVMRMPVDELCLQVKMLDPNCNVNDFLQKLMDPPVAQ 754
Query: 454 SPEAMIRAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITI 513
S E A+ +L +G + + +LT G + ++P+ P ISKM+ + + C + + +
Sbjct: 755 SIE---NALIILKDIGALTPEEELTE-LGQKFGQLPVHPRISKMIYFAILVNCLDPALIL 810
Query: 514 AAVLSVQSIWIA--GRGIQKESDEAKLRFAAAEGDH------VTFLNLYKGFHQSGKSSQ 565
A + + G +K++ AK A+ GDH V +K SG++ +
Sbjct: 811 ACAADEKDPFTMPLSPGDRKKAAAAKHELASLYGDHSDHLATVAAFQCWKNAKASGQAKE 870
Query: 566 WCHKNFVNYHAMKKVLEVREQLRRIAQRIGLVLKSCES------DIQVVRKAVTAGFF-- 617
+C K F++ MK++ ++ +L+ R G++ S + D ++R + G +
Sbjct: 871 FCSKYFISQVVMKRLDDLCRKLQGELNRHGVIPSSSSNCSLNAHDPGILRAVIAVGLYPM 930
Query: 618 -ANACNLEAYSHNGMYKTLRGSQ 639
C L + +T+ G++
Sbjct: 931 LGRMCPLSKNRTRSVIETIAGAK 953
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 42 YASIEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRL- 100
+ I + R +LP+ +R AI+ VE++ +I GETG GKTTQ+PQ+L + W S
Sbjct: 207 FREIFEARSKLPIASFRDAIISAVESNQVVLIAGETGCGKTTQVPQYLLDHMWHSKKEAC 266
Query: 101 -IACTQPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREM 159
I CTQPRR++ +V+ R++ E G +G VGY +R + + +V+ F T+G+LLR +
Sbjct: 267 KIICTQPRRISAISVSDRISWERGETIGRTVGYKVRLQSEGGRESSVV-FCTNGILLRVL 325
Query: 160 MA---DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMAD 216
+ + + + I+VDE HER +D +L +L+ + P LRLI+ SAT++A+ ++
Sbjct: 326 IGKGVNSSVPDITHIIVDEIHERDSYSDFMLMILRDLLPSNPHLRLILMSATLDAERFSE 385
Query: 217 FF 218
+F
Sbjct: 386 YF 387
>AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase family
protein | chr2:19545828-19550871 REVERSE LENGTH=1015
Length = 1015
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 170/681 (24%), Positives = 287/681 (42%), Gaps = 99/681 (14%)
Query: 52 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACTQPRRLAV 111
LP+ + I+ + + T+IVGE G GK++Q+PQFL EA A I CTQPRR AV
Sbjct: 26 LPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAP----ILCTQPRRFAV 81
Query: 112 QAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPL-LTKYSV 170
AVA VA+ LG E+GY I + + + I F T GVLL EM+ L KY V
Sbjct: 82 VAVAKMVAKSRNSDLGGEIGYHIGHSKILT-EGSKILFKTAGVLLDEMLDKGLNALKYKV 140
Query: 171 IMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFXXXXXXXXXXXX 230
I++DE HERS+ +D++L +K+ + +LR+++ SAT + D+F
Sbjct: 141 IILDEVHERSVESDLVLVCVKQFLMKNNDLRVVLMSATADITRYRDYF---------KEL 191
Query: 231 XHGLKVE-PAILSVEGRG-FNVQINYAEE-------------------------PVQDYV 263
G +VE AI S + R F ++ Y E+ ++ +
Sbjct: 192 GRGERVEVVAIPSPDQRTIFQRRVLYLEQVAGLLGVSSDLSAYCPGPSPSSADTEIKPEL 251
Query: 264 QAAVSTVLL-IHEREP--PGDILLFLTGQDDIDAAVQLLNDQNNGKHSSGLIILPLYSGL 320
Q + ++L IHE+EP IL+FL ++ L + + L+ +
Sbjct: 252 QNLIHDLILYIHEKEPDIEKSILVFLPTYYSLEQQYHQLE-----PFFASFEVHILHRSI 306
Query: 321 PRADQELVFSTIPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVV 380
+Q L I R +RKV+++TNIAE+S+T+ + YV+DS S Q F++P + + +
Sbjct: 307 -DTEQALAAMKICRSRRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQL 365
Query: 381 APIXXXXXXXXXXXXXXXXPGKCYRLYTEEYFLNHMANEGIPEIQRSNLVS-----CVIQ 435
+ G+ YRL +F N + P I + +L C +
Sbjct: 366 VWVSRSQAEQRRGRTGRTCDGEVYRLVPSAFF-NKLEEHEPPSILKLSLRQQVLHICCTE 424
Query: 436 LKALGIDNILGFDWPASPSPEAMIRAVEVLYSLGVMDDDAK-LTSPT--GFQVAEIPLDP 492
+A+ N L P P+ + A+ +L S+ + + PT G +A PL
Sbjct: 425 SRAINDANALLAKAMDPPDPDVVDDALRMLLSIQALRKSPRGRYEPTFYGRLLASFPLSF 484
Query: 493 MISKMMIASSQLGCSEEIITIAAVLSVQSIWIAGRGIQKESDEAKLRFAAAEGDHVTFLN 552
S +++ ++G + I + ++ D L GD FL
Sbjct: 485 DASILVVKFGEMGMLRQGILLGVLM----------------DTLPLPIHHPFGDDSLFLE 528
Query: 553 LYKGFH------QSGKSSQWCHKNFVNYHAMKKVLEVREQLRRIAQRIGLVLKSCESDIQ 606
+ G+ NF + ++V + + +L + Q L+ K + D++
Sbjct: 529 YVDHYFGGSKTISGGRREMVLMANFCAFQFWQRVFKDKHRLENLKQ---LLSKEKDKDLK 585
Query: 607 VVRKAVTAGFFANACNLEAYSHNGMYKTLRGSQEVYIHPSSVLFRVNPKWVIYTSLVSTD 666
++ + + C+ + + Y E+Y S R P+++ S+D
Sbjct: 586 LMFPEIEKEW----CDFHNIAQSSFYHV----SELYEDTLSSFHRFRPQFI-----SSSD 632
Query: 667 RQ-YMRNVMTIDPSWLLEAAP 686
Q N D + +E P
Sbjct: 633 SQPTYYNPYEFDHTCYIECQP 653
>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
Length = 1299
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 186/397 (46%), Gaps = 25/397 (6%)
Query: 280 GDILLFLTGQDDIDAAVQLLNDQNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKV 339
G IL+FL G DDI+ Q L + S+ I+ L+S +P +Q+ VF+ P G RK+
Sbjct: 552 GAILVFLPGWDDINKTRQRLLENPFFADSAKFDIICLHSMVPAGEQKKVFNRPPPGCRKI 611
Query: 340 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIXXXXXXXXXXXXXXXX 399
V++TNIAE+++T++ +VYV+DSG K++ Y+P +++ L + +
Sbjct: 612 VLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANAKQRQGRAGRCQ 671
Query: 400 PGKCYRLYTEEYFLNHMANEGIPEIQRSNLVSCVIQLKALGIDNILGFDWPAS----PSP 455
PG CY LY+ M + +PEI+R + +Q+K L N D+ P
Sbjct: 672 PGICYHLYS-RLRAASMPDFKVPEIKRMPVEELCLQVKILD-PNCKTNDFLQKLLDPPVD 729
Query: 456 EAMIRAVEVLYSLGVMDDDAKLTSPTGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAA 515
+++ A+ +L +G + +LT G + +P+ P+ISKM+ + + C + +T+A
Sbjct: 730 QSIANALSILQDIGALTPQEELTE-LGEKFGHLPVHPLISKMLFFAVLVNCLDPALTLAC 788
Query: 516 VLSVQSIWI-----AGRGIQKESDEAKLRFAAAEGDH---VTFLNLYKGFHQSGKSSQWC 567
+ + R + + DH V +K G S+++C
Sbjct: 789 AADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWKNAKGRGLSAEFC 848
Query: 568 HKNFVNYHAMKKVLEVREQLRRIAQRIGLV---LKSCES---DIQVVRKAVTAGFF---A 618
+ FV+ AMK + ++R QL +R G++ + SC D ++R + G +
Sbjct: 849 SQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGILRAVLAVGLYPMVG 908
Query: 619 NACNLEAYSHNGMYKTLRGSQEVYIHPSSVLFRVNPK 655
C + + +T G++ V +H S F ++ K
Sbjct: 909 RLCPAFGNNRRTIVETASGAK-VRVHSLSNNFNLSSK 944
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 109/179 (60%), Gaps = 6/179 (3%)
Query: 45 IEKQRLRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRL--IA 102
I K R +LP+ ++ AI VE++ +I GETG GKTTQ+PQ+L + W+S I
Sbjct: 180 ITKLRSKLPITSFKDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCKIV 239
Query: 103 CTQPRRLAVQAVASRVAQEMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMAD 162
CTQPRR++ +V+ R++ E G +G+ +GY +R + +V+ F T+G+LLR ++
Sbjct: 240 CTQPRRISAMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVV-FCTNGILLRVLVGK 298
Query: 163 PLLTKYSV---IMVDEAHERSISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFF 218
++ S I+VDE HER +D +L +++ + P LRLI+ SAT++A+ + +F
Sbjct: 299 GSVSSVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYF 357