Miyakogusa Predicted Gene

Lj6g3v1995740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1995740.1 Non Chatacterized Hit- tr|K4BZM2|K4BZM2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,38.58,0.000000000000001,TRANSCRIPTION FACTOR IIIB,NULL;
TRANSCRIPTION INITIATION FACTOR IIB-RELATED,Transcription factor
TFI,CUFF.60410.1
         (539 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35540.1 | Symbols:  | zinc ion binding;transcription regulat...   389   e-108
AT3G10330.1 | Symbols:  | Cyclin-like family protein | chr3:3199...    51   2e-06

>AT4G35540.1 | Symbols:  | zinc ion binding;transcription regulators
           | chr4:16873939-16875522 FORWARD LENGTH=527
          Length = 527

 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/549 (40%), Positives = 316/549 (57%), Gaps = 40/549 (7%)

Query: 7   CIHCGKRSFTRDDTTGELFCSSCSAVQPFDNFEAQIGGINGPVGTFIRVGTAGAGSHYSY 66
           C  C   +F RD+ TG  +C  C  ++ +DN+EAQ+GGI GP GT+IRVGT G GS   Y
Sbjct: 3   CKRCNGSNFERDEDTGNSYCGGCGTLREYDNYEAQLGGIRGPQGTYIRVGTIGRGSVLDY 62

Query: 67  KDRKLFTANTTIEELTHRLGLGSKTVDVKSMISQITEGEFGMGHWFEVLIGACAYVIMRK 126
           KD+K++ AN  IEE T RL LG+KT  +KSMIS++T+GEFG G WF +LIGAC Y ++R+
Sbjct: 63  KDKKIYEANNLIEETTERLNLGNKTEVIKSMISKLTDGEFGQGEWFPILIGACCYAVVRE 122

Query: 127 DDRP-LPMAEVASAVDSDVYELGRMILRVIDFLGLKRPDFPEFDIVHSLERTLKNSPSFA 185
           + +  L M EVA  V  D+++LG MI RV+D L L   +  EFD+V    +T+ NSP   
Sbjct: 123 EGKGVLSMEEVAYEVGCDLHQLGPMIKRVVDHLDL---ELREFDLVGLFTKTVTNSPRLT 179

Query: 186 DVEGWTLDRMRKQGVFLIQCAVKWYLSTGRRXXXXXXXXXXXXXXXXXXXXRMDDLAKEV 245
           DV+    +++ KQG FL+ CA+KW+LSTGRR                    ++DDLAK+ 
Sbjct: 180 DVDRDKKEKIIKQGTFLMNCALKWFLSTGRRPMPLVVAVLAFVVQVNGVKVKIDDLAKDA 239

Query: 246 HAVVSTCRTRYRELLETLVKVAQV--LPWGKDITTKNIVRNAPFVIQYMEKKSMS--KPG 301
              ++TC+TRY+EL E LVKVA+   LPW KD+T KN+++++  +   ME KSM   K G
Sbjct: 240 SVSLTTCKTRYKELSEKLVKVAEEVGLPWAKDVTVKNVLKHSGTLFALMEAKSMKKRKQG 299

Query: 302 EKRKNLDQPRLDLADVVAECLRQD-----DDDGGCEYGFIGIASRKD--SQYFSLGSNAD 354
             ++ +      + D+V +CL ++     DDD           +R+D  S+YF +     
Sbjct: 300 TGKELVRTDGFCVEDLVMDCLSKESMYCYDDD-----------ARQDTMSRYFDVEGERQ 348

Query: 355 LAAIKDVDGFQISPECLSMLYKRFLEENRGAKFSN-SDNAQKFQW---SGLNLQDCREWW 410
           L+     D   IS   LS  Y  F +   G   +  S  + +  W   S   +     WW
Sbjct: 349 LSLCNYDD--NISENQLSTKYNEFEDRVCGGTLAKRSQGSSQSMWQRRSVFGMVSTENWW 406

Query: 411 DGXXXXXXXXXXXXXXXXDVGMDAMPPSFVTGQLKYKRRQEKINAAKMRIKRIAQPSEDG 470
            G                DVG++A+PPS++ G +  +RR+EKI AAK+RI  I  PS   
Sbjct: 407 KGKSELSKRLLLKDLLEKDVGLEALPPSYIKGCVAVERRREKIKAAKLRINAIQHPS--- 463

Query: 471 LGDILNPDLLDDSYPERRRKKRRGTVVDDIDWEDLIIETLILHQVKEEDIEKGHYNTLLD 530
             D ++   L       ++K+++G+   +IDWEDL+I+TL+LH V EE+IEKGHY TLLD
Sbjct: 464 --DNVSEGALSLELEHSKKKRKKGS---EIDWEDLVIQTLVLHNVNEEEIEKGHYKTLLD 518

Query: 531 LYVFNSGIV 539
           L+VFNSG V
Sbjct: 519 LHVFNSGEV 527


>AT3G10330.1 | Symbols:  | Cyclin-like family protein |
           chr3:3199907-3201642 FORWARD LENGTH=312
          Length = 312

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 46  NGPVGTFIRVGTAGAGSHYSYKDRKLFTANTTIEELTHRLGLGSKTVD-VKSMISQITEG 104
           NG  G F+        +  S  DR L  A  TI  +  RLGL +   D    +  ++ + 
Sbjct: 80  NGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVATIKDRANEIYKRVEDQ 139

Query: 105 EFGMGHWFEVLIGACAYVIMRKDDRPLPMAEVASAVDSDV-YELGRMILRVIDFLGLKRP 163
           +   G   + L+ AC Y+  R++D+P  + E+ S  +     E+GR    ++  LGL+  
Sbjct: 140 KSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETG 199

Query: 164 DFPEFDIVHS 173
              E   +H+
Sbjct: 200 QLVEMGTIHA 209